Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of SdhR2 in Geobacter sp. M21

Properties
Regulator type: Transcription factor
TF locus tag: GM21_3878
Regulator family: GntR/Others
Regulation mode:
Biological process: Tricarboxylic acid cycle
Effector:
Regulog: SdhR2 - Desulfuromonadales
Statistics of regulated genes:
- Genes 31
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 66 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -92
Score: 5.6
Sequence: CTGTATACAGTATCCAC
Locus tag: GM21_2989
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
GM21_2989
acnB
Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -131
Score: 5.7
Sequence: TTGTATACAGTATACCT
Locus tag: GM21_2561
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
GM21_2561
gltA
Citrate synthase (si) (EC 2.3.3.1)
Position: -290
Score: 6.2
Sequence: TTGTATGCTGTATACAA
Locus tag: GM21_0912
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b558 subunit
Locus tag: GM21_0913
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: GM21_0914
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
GM21_0912
sdhC
Succinate dehydrogenase cytochrome b558 subunit
GM21_0913
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
GM21_0914
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -99
Score: 5.9
Sequence: CTGGATACTGTATACAA
Locus tag: GM21_0672
Name: sfrB
Funciton: Fe(III) reductase, beta subunit
Locus tag: GM21_0673
Name: sfrA
Funciton: Fe(III) reductase, alpha subunit
GM21_0672
sfrB
Fe(III) reductase, beta subunit
GM21_0673
sfrA
Fe(III) reductase, alpha subunit
Position: -224
Score: 6.8
Sequence: TTGTATACTGTATACAA
Locus tag: GM21_1324
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: GM21_1325
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: GM21_1326
Name: Gura_2192
Funciton: 2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)
Locus tag: GM21_1327
Name: Gura_2191
Funciton: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Locus tag: GM21_1328
Name: Gura_2190
Funciton: 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
Locus tag: GM21_1329
Name: Gura_2189
Funciton: 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
GM21_1324
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
GM21_1325
mdh
Malate dehydrogenase (EC 1.1.1.37)
GM21_1326
Gura_2192
2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)
GM21_1327
Gura_2191
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
GM21_1328
Gura_2190
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
GM21_1329
Gura_2189
2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
Position: -43
Score: 6.2
Sequence: TTGGATACTGTATACAA
Locus tag: GM21_3878
Name: sdhR2
Funciton: Transcriptional regulator of central carbohydrate metabolism, GntR family
GM21_3878
sdhR2
Transcriptional regulator of central carbohydrate metabolism, GntR family
Position: -145
Score: 5.7
Sequence: TTGTATACAGTATACCT
Locus tag: GM21_4010
Name: nuoA-1
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: GM21_4009
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: GM21_4008
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: GM21_4007
Name: nouD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: GM21_4006
Name: nuoE-1
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: GM21_4005
Name: nouF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: GM21_4004
Name: Gura_4238
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: GM21_4003
Name: nuoH-1
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: GM21_4002
Name: nuoI-1
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: GM21_4001
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: GM21_4000
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: GM21_3999
Name: nuoL-1
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: GM21_3998
Name: nuoM-1
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: GM21_3997
Name: nuoN-2
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
GM21_4010
nuoA-1
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
GM21_4009
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
GM21_4008
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
GM21_4007
nouD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
GM21_4006
nuoE-1
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
GM21_4005
nouF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
GM21_4004
Gura_4238
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
GM21_4003
nuoH-1
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
GM21_4002
nuoI-1
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
GM21_4001
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
GM21_4000
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
GM21_3999
nuoL-1
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
GM21_3998
nuoM-1
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
GM21_3997
nuoN-2
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -261
Score: 5.7
Sequence: AGGTATACTGTATACAA
Locus tag: GM21_4011
Name: hemL
Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
GM21_4011
hemL
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
Position: -120
Score: 6.2
Sequence: TTGTATACAGTATCCAA
Locus tag: GM21_3877
Name: Gura_4160
Funciton: K+ transport systems, NAD-binding component
Locus tag: GM21_3876
Name: Gura_4159
Funciton: Sugar phosphate isomerases/epimerases
GM21_3877
Gura_4160
K+ transport systems, NAD-binding component
GM21_3876
Gura_4159
Sugar phosphate isomerases/epimerases
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