Regulon of SdhR2 in Geobacter sp. FRC-32
| Regulator type: | Transcription factor |
| TF locus tag: | Geob_0562 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle |
| Effector: | |
| Regulog: | SdhR2 - Desulfuromonadales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfuromonadales
- By TF family - GntR/Others
- By pathway - Tricarboxylic acid cycle
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -105
Score: 5.9 Sequence: TTGTATACAGTATGCCA
Locus tag: Geob_2657
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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acnB
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Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -214
Score: 5.1 Sequence: TTGTATACAGTATATTT
Locus tag: Geob_3549
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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gltA
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Citrate synthase (si) (EC 2.3.3.1)
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Position: -266
Score: 5.7 Sequence: TAGTATACAGTATACAT
Locus tag: Geob_1882
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit
Locus tag: Geob_1883
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Geob_1884
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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sdhC
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Succinate dehydrogenase cytochrome b558 subunit
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sdhA
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Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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frdB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -101
Score: 6.5 Sequence: TTGCATACTGTATACAA
Locus tag: Geob_1607
Name: sfrB Funciton: Fe(III) reductase, beta subunit
Locus tag: Geob_1608
Name: sfrA Funciton: Fe(III) reductase, alpha subunit |
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sfrB
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Fe(III) reductase, beta subunit
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sfrA
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Fe(III) reductase, alpha subunit
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Position: -114
Score: 5.9 Sequence: CTGTATACAGTATACTA
Locus tag: Geob_0462
Name: nuoA-1 Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Geob_0463
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Geob_0464
Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Geob_0465
Name: nouD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Geob_0466
Name: nuoE-1 Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: Geob_0467
Name: nouF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: Geob_0468
Name: Gura_4238 Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: Geob_0469
Name: nuoH-1 Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Geob_0470
Name: Geob_0470 Funciton: NADH-quinone oxidoreductase, chain I
Locus tag: Geob_0471
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Geob_0472
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: Geob_0473
Name: nuoL-1 Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: Geob_0474
Name: nuoM-1 Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: Geob_0475
Name: nuoN-2 Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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nuoA-1
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NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
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NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
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nuoC
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NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
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nouD
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NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
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nuoE-1
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NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nouF
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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Gura_4238
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NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH-1
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NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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Geob_0470
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NADH-quinone oxidoreductase, chain I
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL-1
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NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM-1
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN-2
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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Position: -181
Score: 6.8 Sequence: TTGTATACTGTATACAA
Locus tag: Geob_2663
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Locus tag: Geob_2664
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) |
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icd
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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Position: -41
Score: 6.8 Sequence: TTGTATACTGTATACAA
Locus tag: Geob_0562
Name: sdhR2 Funciton: Transcriptional regulator of central carbohydrate metabolism, GntR family |
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sdhR2
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Transcriptional regulator of central carbohydrate metabolism, GntR family
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Position: -196
Score: 5.9 Sequence: TAGTATACTGTATACAG
Locus tag: Geob_0461
Name: hemL Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
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hemL
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Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
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Position: -137
Score: 6.8 Sequence: TTGTATACAGTATACAA
Locus tag: Geob_0563
Name: Gura_4160 Funciton: K+ transport systems, NAD-binding component
Locus tag: Geob_0564
Name: Gura_4159 Funciton: Sugar phosphate isomerases/epimerases |
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Gura_4160
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K+ transport systems, NAD-binding component
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Gura_4159
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Sugar phosphate isomerases/epimerases
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |