Regulon of SdhR2 in Geobacter metallireducens GS-15

Properties
Regulator type:	Transcription factor
TF locus tag:	Gmet_0062
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Tricarboxylic acid cycle
Effector:
Regulog:	SdhR2 - Desulfuromonadales
Statistics of regulated genes:
- Genes	31
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 66 sites [see more]

Member of regulog collections

By taxonomy - Desulfuromonadales
By TF family - GntR/Others
By pathway - Tricarboxylic acid cycle

Regulated operons
	Locus Tag	Name	Function
Position: -224 Score: 5.9 Sequence: GCGTATACTGTATACAA Locus tag: Gmet_3356 Name: hemL Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
	Gmet_3356	hemL	Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
Position: -94 Score: 5.7 Sequence: TTGTATACAGTATCCAT Locus tag: Gmet_1912 Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
	Gmet_1912	acnB	Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -215 Score: 6.2 Sequence: TTGTATACAGTATACTA Locus tag: Gmet_2689 Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1)
	Gmet_2689	gltA	Citrate synthase (si) (EC 2.3.3.1)
Position: -243 Score: 5.9 Sequence: TAGTATACAGTATACAG Locus tag: Gmet_2397 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b558 subunit Locus tag: Gmet_2396 Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: Gmet_2395 Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	Gmet_2397	sdhC	Succinate dehydrogenase cytochrome b558 subunit
	Gmet_2396	sdhA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	Gmet_2395	frdB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -99 Score: 6.5 Sequence: TTGCATACTGTATACAA Locus tag: Gmet_3023 Name: sfrB Funciton: Fe(III) reductase, beta subunit Locus tag: Gmet_3022 Name: sfrA Funciton: Fe(III) reductase, alpha subunit
	Gmet_3023	sfrB	Fe(III) reductase, beta subunit
	Gmet_3022	sfrA	Fe(III) reductase, alpha subunit
Position: -111 Score: 5.9 Sequence: TTGTATACAGTATACGC Locus tag: Gmet_3355 Name: nuoA-1 Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) Locus tag: Gmet_3354 Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) Locus tag: Gmet_3353 Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) Locus tag: Gmet_3352 Name: nouD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) Locus tag: Gmet_3351 Name: nuoE-1 Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) Locus tag: Gmet_3350 Name: nouF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) Locus tag: Gmet_3349 Name: Gura_4238 Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) Locus tag: Gmet_3348 Name: nuoH-1 Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) Locus tag: Gmet_3347 Name: nuoI-1 Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) Locus tag: Gmet_3346 Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) Locus tag: Gmet_3345 Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) Locus tag: Gmet_3344 Name: nuoL-1 Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) Locus tag: Gmet_3343 Name: nuoM-1 Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) Locus tag: Gmet_3342 Name: nuoN-2 Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
	Gmet_3355	nuoA-1	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
	Gmet_3354	nuoB	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
	Gmet_3353	nuoC	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
	Gmet_3352	nouD	NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
	Gmet_3351	nuoE-1	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
	Gmet_3350	nouF	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
	Gmet_3349	Gura_4238	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
	Gmet_3348	nuoH-1	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
	Gmet_3347	nuoI-1	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
	Gmet_3346	nuoJ	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
	Gmet_3345	nuoK	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
	Gmet_3344	nuoL-1	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
	Gmet_3343	nuoM-1	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
	Gmet_3342	nuoN-2	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -145 Score: 6.2 Sequence: TTGCATACTGTATACAC Locus tag: Gmet_1359 Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) Locus tag: Gmet_1360 Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37) Locus tag: Gmet_1361 Name: Gura_2192 Funciton: 2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3) Locus tag: Gmet_1362 Name: Gura_2191 Funciton: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) Locus tag: Gmet_1363 Name: Gura_2190 Funciton: 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3) Locus tag: Gmet_1364 Name: Gura_2189 Funciton: 2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
	Gmet_1359	icd	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	Gmet_1360	mdh	Malate dehydrogenase (EC 1.1.1.37)
	Gmet_1361	Gura_2192	2-oxoglutarate oxidoreductase, delta subunit, putative (EC 1.2.7.3)
	Gmet_1362	Gura_2191	2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
	Gmet_1363	Gura_2190	2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
	Gmet_1364	Gura_2189	2-oxoglutarate oxidoreductase, gamma subunit (EC 1.2.7.3)
Position: -47 Score: 6.8 Sequence: TTGTATACTGTATACAA Locus tag: Gmet_0062 Name: sdhR2 Funciton: Transcriptional regulator of central carbohydrate metabolism, GntR family
	Gmet_0062	sdhR2	Transcriptional regulator of central carbohydrate metabolism, GntR family
Position: -135 Score: 6.8 Sequence: TTGTATACAGTATACAA Locus tag: Gmet_0063 Name: Gura_4160 Funciton: K+ transport systems, NAD-binding component Locus tag: Gmet_0064 Name: Gura_4159 Funciton: Sugar phosphate isomerases/epimerases
	Gmet_0063	Gura_4160	K+ transport systems, NAD-binding component
	Gmet_0064	Gura_4159	Sugar phosphate isomerases/epimerases

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of SdhR2 in Geobacter metallireducens GS-15

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --