Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TsrR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_0577, Shal_0561
Regulator family: [Other]
Regulation mode:
Biological process: Thiosulfate reduction
Effector: Thiosulfate
Regulog: TsrR - Shewanellaceae
Statistics of regulated genes:
- Genes 25
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 40 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -263
Score: 5.5
Sequence: ATCCTTTTAGATGTCAAAAGGT
Locus tag: Shal_0551
Name: tsrA
Funciton: Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA
Locus tag: Shal_0552
Name: tsrB
Funciton: Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB
Locus tag: Shal_0553
Name: tsrC
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase
Locus tag: Shal_0554
Name: tsrD
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase
Locus tag: Shal_0555
Name: tsrE
Funciton: Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE
Locus tag: Shal_0556
Name: tsrF
Funciton: Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF
Locus tag: Shal_0557
Name: tsrG
Funciton: Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG
Locus tag: Shal_0558
Name: tsrH
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrH
Locus tag: Shal_0559
Name: tsrI
Funciton: Predicted thiosulfate respiratory reductasematuration protein TsrI (ATPase)
Locus tag: Shal_0560
Name: tsrY
Funciton: Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ
Locus tag: Shal_0561
Name: tsrR
Funciton: Predicted transcriptional regulator, winged HTH domain
tsrA
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA
tsrB
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB
tsrC
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase
tsrD
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase
tsrE
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE
tsrF
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF
tsrG
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG
tsrH
Predicted thiosulfate respiratory reductase maturation protein TsrH
tsrI
Predicted thiosulfate respiratory reductasematuration protein TsrI (ATPase)
tsrY
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ
tsrR
Predicted transcriptional regulator, winged HTH domain

Position: -287
Score: 4.7
Sequence: CTTTTTTGCGATTCAAAAAACG
Position: -257
Score: 6
Sequence: TGATTTTTATATCTAAAAAGAT
Locus tag: Shal_0567
Name: tsrA
Funciton: Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA
Locus tag: Shal_0568
Name: tsrB
Funciton: Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB
Locus tag: Shal_0569
Name: tsrC
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase
Locus tag: Shal_0570
Name: tsrD
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase
Locus tag: Shal_0571
Name: tsrE
Funciton: Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE
Locus tag: Shal_0572
Name: tsrF
Funciton: Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF
Locus tag: Shal_0573
Name: tsrG
Funciton: Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG
Locus tag: Shal_0574
Name: tsrH
Funciton: Predicted thiosulfate respiratory reductase maturation protein TsrH
Locus tag: Shal_0575
Name: tsrI
Funciton: Predicted thiosulfate respiratory reductasematuration protein TsrI (ATPase)
Locus tag: Shal_0576
Name: tsrY
Funciton: Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ
Locus tag: Shal_0577
Name: tsrR
Funciton: Predicted transcriptional regulator, winged HTH domain
tsrA
Predicted thiosulfate respiratory reductase, cytochrome c-552/4 subunit TsrA
tsrB
Predicted thiosulfate respiratory reductase, rhodanese domain protein TsrB
tsrC
Predicted thiosulfate respiratory reductase maturation protein TsrC, peptidyl-prolyl cis-trans isomerase
tsrD
Predicted thiosulfate respiratory reductase maturation protein TsrD, cytochrome c-type heme lyase
tsrE
Predicted thiosulfate respiratory reductase, 4Fe-4S protein TsrE
tsrF
Predicted thiosulfate respiratory reductase, integral transmembrane protein TsrF
tsrG
Predicted thiosulfate respiratory reductase maturation protein, outer-membrane lipoprotein TsrG
tsrH
Predicted thiosulfate respiratory reductase maturation protein TsrH
tsrI
Predicted thiosulfate respiratory reductasematuration protein TsrI (ATPase)
tsrY
Predicted thiosulfate respiratory reductase maturation transmembrane protein TsrJ
tsrR
Predicted transcriptional regulator, winged HTH domain

Position: -314
Score: 5.5
Sequence: ACCTTTTGACATCTAAAAGGAT
Locus tag: Shal_0550
Name: ccmF-2
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: Shal_0549
Name: ccmL
Funciton: Cytochrome c heme lyase subunit CcmL
Locus tag: Shal_0548
Name: ccmH
Funciton: Thioredoxin
ccmF-2
Cytochrome c heme lyase subunit CcmF
ccmL
Cytochrome c heme lyase subunit CcmL
ccmH
Thioredoxin
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