Profile of regulator TsrR in Shewanellaceae
Properties
| Regulator family: |
[Other] |
| Regulation mode: |
|
| Biological process: |
Thiosulfate reduction |
| Effector: |
Thiosulfate |
| Regulog: |
TsrR - Shewanellaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Shewanella halifaxensis HAW-EB4
|
|
Shal_0567 |
tsrA |
-287 |
4.7 |
CTTTTTTGCGATTCAAAAAACG |
|
Shal_0567 |
tsrA |
-257 |
6 |
TGATTTTTATATCTAAAAAGAT |
|
Shal_0551 |
tsrA |
-263 |
5.5 |
ATCCTTTTAGATGTCAAAAGGT |
|
Shal_0550 |
ccmF-2 |
-314 |
5.5 |
ACCTTTTGACATCTAAAAGGAT |
|
Shewanella loihica PV-4
|
|
Shew_0347 |
ccmF-2 |
-169 |
6.2 |
GCATTTTTAGATCTCAAAAAAG |
|
Shew_0347 |
ccmF-2 |
-139 |
5.4 |
GCTTTTTGAGTTATGAAAAATA |
|
Shew_0348 |
tsrA |
-320 |
5.4 |
TATTTTTCATAACTCAAAAAGC |
|
Shew_0348 |
tsrA |
-290 |
6.2 |
CTTTTTTGAGATCTAAAAATGC |
|
Shewanella oneidensis MR-1
|
|
SO0478 |
ccmF-2 |
-281 |
6.9 |
GTTTTTTTAGATCTAAAAAAAC |
|
SO0479 |
tsrA |
-250 |
6.9 |
GTTTTTTTAGATCTAAAAAAAC |
|
Shewanella pealeana ATCC 700345
|
|
Spea_0503 |
tsrA |
-259 |
6 |
TGATTTTTATATCTAAAAAGAT |
|
Spea_0478 |
ccmF-2 |
-316 |
4.8 |
GCATTTTTTGATATCTAAAAAG |
|
Spea_0478 |
ccmF-2 |
-314 |
6.3 |
ATTTTTTGATATCTAAAAAGAC |
|
Spea_0503 |
tsrA |
-289 |
5.4 |
CTTTTTTGCGATTTAAAAAACG |
|
Spea_0479 |
tsrA |
-264 |
6.3 |
GTCTTTTTAGATATCAAAAAAT |
|
Spea_0479 |
tsrA |
-262 |
4.8 |
CTTTTTAGATATCAAAAAATGC |
|
Shewanella piezotolerans WP3
|
|
swp_4658 |
ccmF-2 |
-258 |
6.4 |
TTATTTTTAGATCTAAAAAAAG |
|
swp_4657 |
tsrA |
-366 |
6.4 |
CTTTTTTTAGATCTAAAAATAA |
|
Shewanella putrefaciens CN-32
|
|
Sputcn32_3365 |
ccmF-2 |
-334 |
6 |
TGTTTTTTAGAAGTAAAAAAGC |
|
Sputcn32_3365 |
ccmF-2 |
-313 |
5.8 |
CCTGTTTTAGTTATAAAAAAAA |
|
Sputcn32_3364 |
tsrA |
-253 |
5.8 |
TTTTTTTTATAACTAAAACAGG |
|
Sputcn32_3364 |
tsrA |
-232 |
6 |
GCTTTTTTACTTCTAAAAAACA |
|
Shewanella sediminis HAW-EB3
|
|
Ssed_0482 |
tsrA |
-254 |
6.1 |
ATCCTTTTAGATCTAAAAAACA |
|
Ssed_0493 |
tsrA |
-256 |
5.3 |
CGATTTTTATTTCTAAAATGAT |
|
Ssed_0493 |
tsrA |
-132 |
4.9 |
TGTTTTTTATATGGAAAATAGA |
|
Ssed_0481 |
ccmF-2 |
-314 |
6.1 |
TGTTTTTTAGATCTAAAAGGAT |
|
Shewanella sp ANA-3
|
|
Shewana3_0488 |
ccmF-2 |
-284 |
6.4 |
GGCTTTTTAGATCTAAAAAGAG |
|
Shewana3_0489 |
tsrA |
-253 |
6.4 |
CTCTTTTTAGATCTAAAAAGCC |
|
Shewanella sp MR-4
|
|
Shewmr4_0487 |
ccmF-2 |
-315 |
6.4 |
GTTTTTTGAGATATAAAAAGAC |
|
Shewmr4_0488 |
tsrA |
-253 |
6.4 |
GTCTTTTTATATCTCAAAAAAC |
|
Shewanella sp MR-7
|
|
Shewmr7_3543 |
ccmF-2 |
-316 |
6.4 |
GGTTTTTGAGATCTAAAAAGAC |
|
Shewmr7_3542 |
tsrA |
-253 |
6.4 |
GTCTTTTTAGATCTCAAAAACC |
|
Shewanella sp W3-18-1
|
|
Sputw3181_0576 |
ccmF-2 |
-334 |
6 |
TGTTTTTTAGAAGTAAAAAAGC |
|
Sputw3181_0576 |
ccmF-2 |
-313 |
5.8 |
CCTGTTTTAGTTATAAAAAAAA |
|
Sputw3181_0577 |
tsrA |
-253 |
5.8 |
TTTTTTTTATAACTAAAACAGG |
|
Sputw3181_0577 |
tsrA |
-232 |
6 |
GCTTTTTTACTTCTAAAAAACA |
|
Shewanella woodyi ATCC 51908
|
|
Swoo_4456 |
tsrA |
-258 |
5.8 |
CAGTTTTTAGATCTAAAAAATC |
|
Swoo_4456 |
tsrA |
-134 |
4.9 |
TGTTTTTTATATGGAAAATACT |
|
Swoo_4477 |
tsrA |
-265 |
5.7 |
AACCTTTTAGATATCAAAAAAC |
|
Swoo_4478 |
ccmF-2 |
-320 |
5.7 |
GTTTTTTGATATCTAAAAGGTT |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
DOWNLOAD
|
