Regulon of FadR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_1842
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Shewanellaceae
Statistics of regulated genes:
- Genes	7
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -107 Score: 4.9 Sequence: AACTGGACTGACCTGTT Locus tag: Shal_0152 Name: SO4716 Funciton: Acetyltransferase, GNAT family
	Shal_0152	SO4716	Acetyltransferase, GNAT family
Position: -97 Score: 5.2 Sequence: TAATGGTCAGACCTGTT Locus tag: Shal_2671 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: Shal_2670 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	Shal_2671	fadI	FadI component of anaerobic fatty acid oxidation complex
	Shal_2670	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -39 Score: 4.5 Sequence: TTCTGGTCGGAGTTGTT Locus tag: Shal_2681 Name: fadL Funciton: Long-chain fatty acid transport protein
	Shal_2681	fadL	Long-chain fatty acid transport protein
Position: -35 Score: 4 Sequence: GTCTGGACAGACCACTT Locus tag: Shal_3794 Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	Shal_3794	SO0572	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -52 Score: 3.5 Sequence: CTCTGGTATGATCTGTA Locus tag: Shal_1842 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	Shal_1842	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -92 Score: 4.1 Sequence: CACAGGTCTGACCACAC Locus tag: Shal_1890 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Shal_1890	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD