Regulon of FadR in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO_2885
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Shewanellaceae
Statistics of regulated genes:
- Genes	7
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 101 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -92 Score: 5.3 Sequence: AACTGGCCAGACCTGTT Locus tag: SO_4716 Name: SO4716 Funciton: Acetyltransferase, GNAT family
	SO_4716	SO4716	Acetyltransferase, GNAT family
Position: -109 Score: 5.2 Sequence: TAATGGTCAGACCTGTT Locus tag: SO_3089 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: SO_3088 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	SO_3089	fadI	FadI component of anaerobic fatty acid oxidation complex
	SO_3088	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -196 Score: 4.8 Sequence: ATCTGGCCAGACCATTC Position: -125 Score: 5.1 Sequence: ATCTGGTCGGACTTGTT Locus tag: SO_3099 Name: fadL Funciton: Long-chain fatty acid transport protein
	SO_3099	fadL	Long-chain fatty acid transport protein
Position: -29 Score: 4.7 Sequence: ATCTGGACTGACCAGTA Locus tag: SO0572 Name: SO0572 Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	SO0572	SO0572	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -54 Score: 3.4 Sequence: CTCTGGTATGATCAGTG Locus tag: SO2885 Name: fadR Funciton: Transcriptional regulator for fatty acid degradation FadR, GntR family
	SO2885	fadR	Transcriptional regulator for fatty acid degradation FadR, GntR family
Position: -94 Score: 4.2 Sequence: CACAGGTCTGACCACAA Locus tag: SO2536 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	SO2536	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD