Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GlxR in Corynebacterium urealyticum DSM 7109

Properties
Regulator type: Transcription factor
TF locus tag: cur_1867
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Energy metabolism; Carbohydrate metabolism
Effector: Cyclic 3',5'-AMP
Regulog: GlxR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 84
- Operons 49
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 562 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -139
Score: 4.1
Sequence: TGTGACCCCCGTAACA
Locus tag: cur_1871
Name: whiB4
Funciton: Predicted transcriptional regulator, WhiB family
cur_1871
whiB4
Predicted transcriptional regulator, WhiB family
Position: -50
Score: 3.9
Sequence: AGTGACCAAGGTCTCC
Locus tag: cur_0201
Name: sdhC
Funciton: Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
Locus tag: cur_0202
Name: sdhA
Funciton: Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
Locus tag: cur_0203
Name: sdhB
Funciton: Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
Locus tag: cur_0204
Name: cg0448
Funciton: Conserved hypothetical protein
cur_0201
sdhC
Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
cur_0202
sdhA
Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
cur_0203
sdhB
Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
cur_0204
cg0448
Conserved hypothetical protein
Position: -4
Score: 3.4
Sequence: AGTAATGAGCAGCACA
Locus tag: cur_1726
Name: famR
Funciton: Fatty acids metabolism transcriptional regulator FamR, MarR family
cur_1726
famR
Fatty acids metabolism transcriptional regulator FamR, MarR family
Position: -144
Score: 4
Sequence: GGTGTTGGGGGTCACA
Locus tag: cur_1135
Name: fadA2
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
cur_1135
fadA2
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -202
Score: 3.8
Sequence: CGTGATGAAGGCCACC
Locus tag: cur_0740
Name: fadD11
Funciton: Acyl-CoA synthetase, AMP-binding protein
cur_0740
fadD11
Acyl-CoA synthetase, AMP-binding protein
Position: -26
Score: 3.4
Sequence: TGGGCTGAACGCCACA
Locus tag: cur_1605
Name: actA
Funciton: Butyryl-CoA:acetate-CoA transferase (EC 2.8.3.8)
cur_1605
actA
Butyryl-CoA:acetate-CoA transferase (EC 2.8.3.8)
Position: -241
Score: 4.2
Sequence: AGTGTTTCATATCACT
Locus tag: cur_1766
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
cur_1766
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: 74
Score: 3.6
Sequence: GGTGGCAGACGTCACC
Locus tag: cur_1021
Name: acn
Funciton: Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Locus tag: cur_1020
Name: acnR
Funciton: Aconitase gene transcriptional regulator AcnR, TetR family
cur_1021
acn
Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
cur_1020
acnR
Aconitase gene transcriptional regulator AcnR, TetR family
Position: -130
Score: 4.1
Sequence: TGTAACCAAGCTCACA
Locus tag: cur_0497
Name: cg0879
Funciton: Conserved hypothetical protein
cur_0497
cg0879
Conserved hypothetical protein
Position: -159
Score: 3.8
Sequence: TGTGAGCTACGCGACA
Position: -80
Score: 4.1
Sequence: TGAGAACTGAACCACA
Locus tag: cur_1558
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
cur_1558
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -119
Score: 3.5
Sequence: GGTGATTTTGCGCACG
Locus tag: cur_0562
Name: rpf2
Funciton: Cell wall-binding protein
Locus tag: cur_0563
Name: ksgA
Funciton: Dimethyladenosine transferase (EC 2.1.1.-)
Locus tag: cur_0564
Name: ispE
Funciton: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
Locus tag: cur_0565
Name: cg1040
Funciton: Predicted ABC transporter, ATP-binding protein
cur_0562
rpf2
Cell wall-binding protein
cur_0563
ksgA
Dimethyladenosine transferase (EC 2.1.1.-)
cur_0564
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
cur_0565
cg1040
Predicted ABC transporter, ATP-binding protein
Position: -97
Score: 3.4
Sequence: TGCGTTGCGCCCCACA
Locus tag: cur_0603
Name: coaA
Funciton: Pantothenate kinase (EC 2.7.1.33)
cur_0603
coaA
Pantothenate kinase (EC 2.7.1.33)
Position: -33
Score: 4.8
Sequence: AGTGACCTAAATCACT
Locus tag: cur_1582
Name: cg1142
Funciton: Conserved hypothetical protein
Locus tag: cur_1581
Name: cg2803
Funciton: Conserved hypothetical protein
cur_1582
cg1142
Conserved hypothetical protein
cur_1581
cg2803
Conserved hypothetical protein
Position: -138
Score: 3.6
Sequence: AGTATGCCACGTCACA
Position: -69
Score: 3.4
Sequence: TGTGATCTGCCTTCCA
Locus tag: cur_0684
Name: deaD
Funciton: Cold shock ATP-dependent RNA helicase
cur_0684
deaD
Cold shock ATP-dependent RNA helicase
Position: -205
Score: 3.9
Sequence: TGTGGATTTGTCCACA
Locus tag: cur_1984
Name: dnaB
Funciton: Replicative DNA helicase (EC 3.6.1.-)
cur_1984
dnaB
Replicative DNA helicase (EC 3.6.1.-)
Position: -83
Score: 4
Sequence: AGTGACGCGGATCTCT
Locus tag: cur_0020
Name: qacA
Funciton: Antiseptic resistance protein
Locus tag: cur_0019
Name: qacR
Funciton: Drugs resistance transcriptional regulator protein QacR, TetR family
cur_0020
qacA
Antiseptic resistance protein
cur_0019
qacR
Drugs resistance transcriptional regulator protein QacR, TetR family
Position: -78
Score: 4.3
Sequence: AGTGACCTGCACCACT
Locus tag: cur_1339
Name: fadD5
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
cur_1339
fadD5
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -470
Score: 3.9
Sequence: AGTGTAACAAACCACA
Position: -468
Score: 3.7
Sequence: TGTAACAAACCACACA
Locus tag: cur_0110
Name: qacA
Funciton: Antiseptic resistance protein
cur_0110
qacA
Antiseptic resistance protein
Position: -383
Score: 4
Sequence: GGTGGCGTGGATCACC
Locus tag: cur_1236
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Locus tag: cur_1235
Name: qcrC
Funciton: Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: cur_1234
Name: qcrA
Funciton: Ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC 1.10.2.2)
Locus tag: cur_1233
Name: qcrB
Funciton: Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit (EC 1.10.2.2)
cur_1236
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
cur_1235
qcrC
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
cur_1234
qcrA
Ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC 1.10.2.2)
cur_1233
qcrB
Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit (EC 1.10.2.2)
Position: -92
Score: 4.3
Sequence: TGTGTGCTTCTTCACA
Locus tag: cur_1002
Name: ctaA
Funciton: Cytochrome oxidase assembly protein
cur_1002
ctaA
Cytochrome oxidase assembly protein
Position: -207
Score: 3.5
Sequence: TGTGTCTTAAATAATT
Locus tag: cur_1005
Name: mptB
Funciton: Putative membrane protein
Locus tag: cur_1004
Name: CORAM0001_0942
Funciton: ABC-type multidrug transport system, ATPase component
Locus tag: cur_1003
Name: CORAM0001_0941
Funciton: ABC drug efflux pump, inner membrane subunit, DrrB family
cur_1005
mptB
Putative membrane protein
cur_1004
CORAM0001_0942
ABC-type multidrug transport system, ATPase component
cur_1003
CORAM0001_0941
ABC drug efflux pump, inner membrane subunit, DrrB family
Position: -3
Score: 4
Sequence: TGAGTGGCAGCTCACA
Locus tag: cur_0993
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
cur_0993
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
Position: -101
Score: 3.4
Sequence: CGTGCCCCTCGTCACC
Locus tag: cur_1672
Name: genF
Funciton: Fumarylpyruvate hydrolase
cur_1672
genF
Fumarylpyruvate hydrolase
Position: -150
Score: 4.4
Sequence: GGTGAAACACGTCACA
Locus tag: cur_1567
Name: rpf1
Funciton: Resuscitation-promoting factor Rpf1
cur_1567
rpf1
Resuscitation-promoting factor Rpf1
Position: -185
Score: 4
Sequence: TGTGATTTGTCTCTCG
Position: -38
Score: 4
Sequence: CGTGATCGAGGTCACC
Locus tag: cur_0192
Name: glcB
Funciton: Malate synthase G (EC 2.3.3.9)
cur_0192
glcB
Malate synthase G (EC 2.3.3.9)
Position: -120
Score: 3.9
Sequence: TGTGATCTACGCCATG
Locus tag: cur_1688
Name: fadE3
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: cur_1687
Name: fadE4
Funciton: Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
cur_1688
fadE3
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
cur_1687
fadE4
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -53
Score: 4.1
Sequence: TGTGAGGTGATACACT
Locus tag: cur_0764
Name: leuB
Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
cur_0764
leuB
3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Position: -65
Score: 3.5
Sequence: AATTATTTAAGACACA
Locus tag: cur_1006
Name: sufR
Funciton: Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
Locus tag: cur_1007
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: cur_1008
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: cur_1009
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: cur_1010
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: cur_1011
Name: sufU
Funciton: Iron-sulfur cluster assembly scaffold protein
Locus tag: cur_1012
Name: sufT
Funciton: Predicted Fe-S cluster assembly protein
cur_1006
sufR
Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
cur_1007
sufB
Iron-sulfur cluster assembly protein SufB
cur_1008
sufD
Iron-sulfur cluster assembly protein SufD
cur_1009
sufC
Iron-sulfur cluster assembly ATPase protein SufC
cur_1010
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
cur_1011
sufU
Iron-sulfur cluster assembly scaffold protein
cur_1012
sufT
Predicted Fe-S cluster assembly protein
Position: -78
Score: 4.6
Sequence: TGTGACCTGAATCACG
Locus tag: cur_1749
Name: fadD10
Funciton: 4-coumarate--CoA ligase 1 (EC 6.2.1.12)
cur_1749
fadD10
4-coumarate--CoA ligase 1 (EC 6.2.1.12)
Position: -203
Score: 4.7
Sequence: TGTGATGGTAATCACA
Locus tag: cur_1522
Name: cg0952
Funciton: Putative membrane protein
Locus tag: cur_1523
Name: mctC
Funciton: Monocarboxylic acid transporter
cur_1522
cg0952
Putative membrane protein
cur_1523
mctC
Monocarboxylic acid transporter
Position: -220
Score: 3.4
Sequence: GGTGAAGAAAAACTCT
Locus tag: cur_0173
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
cur_0173
pck
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Position: -49
Score: 3.9
Sequence: TGTAAAGTGTCTCACA
Locus tag: cur_1813
Name: aldA
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
cur_1813
aldA
Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -214
Score: 3.6
Sequence: TGTGACGTGCGCTACG
Position: -180
Score: 4.3
Sequence: AGTGAAGCCGATCACA
Locus tag: cur_1739
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: cur_1738
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
cur_1739
pta
Phosphate acetyltransferase (EC 2.3.1.8)
cur_1738
ackA
Acetate kinase (EC 2.7.2.1)
Position: -50
Score: 3.6
Sequence: TGTGATCCGAGCAACC
Locus tag: cur_1255
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
cur_1255
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -1
Score: 4.3
Sequence: TGTGGCGAAGGCCACA
Locus tag: cur_1844
Name: cg3090
Funciton: Predicted permease, MFS family
cur_1844
cg3090
Predicted permease, MFS family
Position: -47
Score: 4.5
Sequence: AGTGATGCAGGACACA
Locus tag: cur_0179
Name: fadA1
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: cur_0178
Name: fadB1
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
cur_0179
fadA1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
cur_0178
fadB1
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -176
Score: 3.9
Sequence: TGTAATCAAGATCTCA
Position: -46
Score: 4.3
Sequence: TATGATGTACATCACG
Locus tag: cur_0800
Name: gdh
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
cur_0800
gdh
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -268
Score: 4
Sequence: CGAGAGACAAATCACA
Position: -138
Score: 4
Sequence: AGTGGCCCATGACACA
Locus tag: cur_0191
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
cur_0191
aceA
Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
Position: -16
Score: 4
Sequence: TGTGAGGAGGCTCATA
Locus tag: cur_0447
Name: prpD
Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79)
Locus tag: cur_0448
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
cur_0447
prpD
2-methylcitrate dehydratase (EC 4.2.1.79)
cur_0448
prpC
2-methylcitrate synthase (EC 2.3.3.5)
Position: -114
Score: 4.1
Sequence: GGTGACTGAGGCCACA
Position: -72
Score: 4.1
Sequence: AGAGTTCTGGGTCACA
Locus tag: cur_0606
Name: fadE6
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
cur_0606
fadE6
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Position: -6
Score: 3.4
Sequence: TGAGACGTGGACTACT
Locus tag: cur_1285
Name: thrC
Funciton: Threonine synthase (EC 4.2.3.1)
cur_1285
thrC
Threonine synthase (EC 4.2.3.1)
Position: 30
Score: 4.3
Sequence: TGTGGCCTTCGCCACA
Locus tag: cur_1845
Name: acx
Funciton: Acyl-CoA oxidase 1, peroxisomal (EC 1.3.3.6)
cur_1845
acx
Acyl-CoA oxidase 1, peroxisomal (EC 1.3.3.6)
Position: -161
Score: 4
Sequence: TGTGACCCCCAACACC
Locus tag: cur_1136
Name: fabG2
Funciton: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Locus tag: cur_1137
Name: fas
Funciton: Acyl dehydratase
cur_1136
fabG2
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
cur_1137
fas
Acyl dehydratase
Position: -263
Score: 4
Sequence: GGTGAATGTGATCACA
Locus tag: cur_0710
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: cur_0711
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: cur_0712
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: cur_0713
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: cur_0714
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: cur_0715
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: cur_0716
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: cur_0717
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
cur_0710
atpB
ATP synthase A chain (EC 3.6.3.14)
cur_0711
atpE
ATP synthase C chain (EC 3.6.3.14)
cur_0712
atpF
ATP synthase B chain (EC 3.6.3.14)
cur_0713
atpH
ATP synthase delta chain (EC 3.6.3.14)
cur_0714
atpA
ATP synthase alpha chain (EC 3.6.3.14)
cur_0715
atpG
ATP synthase gamma chain (EC 3.6.3.14)
cur_0716
atpD
ATP synthase beta chain (EC 3.6.3.14)
cur_0717
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Position: -29
Score: 3.9
Sequence: TGTGAATATTGATACC
Locus tag: cur_1859
Name: cg0360
Funciton: Predicted phosphatase
cur_1859
cg0360
Predicted phosphatase
Position: -49
Score: 4.5
Sequence: TGAGACCCGCATCACA
Locus tag: cur_0212
Name: fadD6
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
cur_0212
fadD6
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -317
Score: 4.1
Sequence: TGTGGTTCAGTTCTCA
Position: -238
Score: 3.8
Sequence: TGTCGCGTAGCTCACA
Locus tag: cur_1557
Name: gltA
Funciton: Citrate synthase (EC 2.3.3.1)
cur_1557
gltA
Citrate synthase (EC 2.3.3.1)
Position: -401
Score: 4.1
Sequence: TGTTACGGGGGTCACA
Position: -191
Score: 4.5
Sequence: TGTGATGCGCCCCACA
Locus tag: cur_1872
Name: pbp1B
Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
cur_1872
pbp1B
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
Position: -140
Score: 4
Sequence: TGTTAGTATCATCACA
Locus tag: cur_0753
Name: ilvB
Funciton: Acetolactate synthase, large subunit (EC 2.2.1.6)
Locus tag: cur_0754
Name: ilvN
Funciton: Acetolactate synthase, small subunit (EC 2.2.1.6)
Locus tag: cur_0755
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
cur_0753
ilvB
Acetolactate synthase, large subunit (EC 2.2.1.6)
cur_0754
ilvN
Acetolactate synthase, small subunit (EC 2.2.1.6)
cur_0755
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
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