Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GlxR in Corynebacterium jeikeium K411

Properties
Regulator type: Transcription factor
TF locus tag: jk1972
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Energy metabolism; Carbohydrate metabolism
Effector: Cyclic 3',5'-AMP
Regulog: GlxR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 78
- Operons 47
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 562 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -299
Score: 4.2
Sequence: TGTGACGCGCAACACG
Position: -143
Score: 3.6
Sequence: TGTGACCTATTCGACA
Position: -115
Score: 3.8
Sequence: TGTGAATAAAATTACT
Locus tag: jk1976
Name: whiB4
Funciton: Predicted transcriptional regulator, WhiB family
jk1976
whiB4
Predicted transcriptional regulator, WhiB family
Position: -349
Score: 3.8
Sequence: AGTAATTTTATTCACA
Position: -165
Score: 4.2
Sequence: CGTGTTGCGCGTCACA
Locus tag: jk1977
Name: pbp1B
Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
jk1977
pbp1B
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
Position: -98
Score: 3.8
Sequence: AGTTGTGCGCGTCACA
Locus tag: jk1363
Name: putP
Funciton: Sodium/proline symporter
Locus tag: jk1364
Name: cg1313
Funciton: Putative exported protein
Locus tag: jk1365
Name: cg1314
Funciton: integral membrane protein
jk1363
putP
Sodium/proline symporter
jk1364
cg1313
Putative exported protein
jk1365
cg1314
integral membrane protein
Position: -115
Score: 3.9
Sequence: TGTGATCCGCGACTCT
Position: -1
Score: 3.9
Sequence: TATGACCGAGGACACA
Locus tag: jk1940
Name: cg3090
Funciton: Predicted permease, MFS family
jk1940
cg3090
Predicted permease, MFS family
Position: -148
Score: 3.8
Sequence: CGTGACTGAAGGCACA
Locus tag: jk2042
Name: fadD7
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: jk2043
Name: glfT
Funciton: Galactofuranosyl transferase (EC 2.4.1.287)
jk2042
fadD7
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
jk2043
glfT
Galactofuranosyl transferase (EC 2.4.1.287)
Position: -56
Score: 3.3
Sequence: TATAGGGTGAATCACA
Locus tag: jk0257
Name: famR
Funciton: Fatty acids metabolism transcriptional regulator FamR, MarR family
jk0257
famR
Fatty acids metabolism transcriptional regulator FamR, MarR family
Position: -226
Score: 3.2
Sequence: TGGGATGTTTTTAACA
Locus tag: jk0969
Name: acn
Funciton: Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Locus tag: jk0970
Name: acnR
Funciton: Aconitase gene transcriptional regulator AcnR, TetR family
jk0969
acn
Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
jk0970
acnR
Aconitase gene transcriptional regulator AcnR, TetR family
Position: -25
Score: 4.2
Sequence: AGTGATCTGAATTACA
Locus tag: jk0465
Name: fadD11
Funciton: Acyl-CoA synthetase, AMP-binding protein
jk0465
fadD11
Acyl-CoA synthetase, AMP-binding protein
Position: -157
Score: 4.2
Sequence: TGTGACGCAGATGACA
Locus tag: jk0425
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
jk0425
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -167
Score: 4.1
Sequence: TGTGATTTGCAGAACA
Locus tag: jk1512
Name: rpf2
Funciton: Cell wall-binding protein
Locus tag: jk1511
Name: ksgA
Funciton: Dimethyladenosine transferase (EC 2.1.1.-)
Locus tag: jk1510
Name: ispE
Funciton: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
Locus tag: jk1509
Name: cg1040
Funciton: Predicted ABC transporter, ATP-binding protein
jk1512
rpf2
Cell wall-binding protein
jk1511
ksgA
Dimethyladenosine transferase (EC 2.1.1.-)
jk1510
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)
jk1509
cg1040
Predicted ABC transporter, ATP-binding protein
Position: -33
Score: 4.5
Sequence: AGTGATACAAATCACT
Locus tag: jk0402
Name: cg1142
Funciton: Conserved hypothetical protein
Locus tag: jk0403
Name: cg2803
Funciton: Conserved hypothetical protein
jk0402
cg1142
Conserved hypothetical protein
jk0403
cg2803
Conserved hypothetical protein
Position: -103
Score: 3.8
Sequence: GGTGACCCAGCCCACC
Locus tag: jk1433
Name: cg3286
Funciton: conserved hypothetical protein
Locus tag: jk1434
Name: copO
Funciton: Multicopper oxidase, secreted
jk1433
cg3286
conserved hypothetical protein
jk1434
copO
Multicopper oxidase, secreted
Position: -15
Score: 3.8
Sequence: GGAGACGAACGCCACA
Locus tag: jk1693
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
jk1693
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -126
Score: 5
Sequence: TGTGACGAAGATCACA
Locus tag: jk0417
Name: cspB
Funciton: Cold-shock DNA-binding domain protein
jk0417
cspB
Cold-shock DNA-binding domain protein
Position: -64
Score: 4
Sequence: TGTGGCGCTGGTCACG
Locus tag: jk0986
Name: mptB
Funciton: Putative membrane protein
Locus tag: jk0987
Name: CORAM0001_0942
Funciton: ABC-type multidrug transport system, ATPase component
Locus tag: jk0988
Name: CORAM0001_0941
Funciton: ABC drug efflux pump, inner membrane subunit, DrrB family
Locus tag: jk0989
Name: ctaA
Funciton: Cytochrome oxidase assembly protein
jk0986
mptB
Putative membrane protein
jk0987
CORAM0001_0942
ABC-type multidrug transport system, ATPase component
jk0988
CORAM0001_0941
ABC drug efflux pump, inner membrane subunit, DrrB family
jk0989
ctaA
Cytochrome oxidase assembly protein
Position: -56
Score: 3.6
Sequence: AGTGACCTCCGTTACT
Locus tag: jk0654
Name: gluA
Funciton: Glutamate ABC transporter, ATP-binding protein
Locus tag: jk0655
Name: gluB
Funciton: Glutamate ABC transporter, substrate-binding protein
Locus tag: jk0656
Name: gluC
Funciton: Glutamate ABC transporter, permease protein 1
Locus tag: jk0657
Name: gluD
Funciton: Glutamate ABC transporter, permease protein 2
jk0654
gluA
Glutamate ABC transporter, ATP-binding protein
jk0655
gluB
Glutamate ABC transporter, substrate-binding protein
jk0656
gluC
Glutamate ABC transporter, permease protein 1
jk0657
gluD
Glutamate ABC transporter, permease protein 2
Position: -103
Score: 4.4
Sequence: AGTGATCTGCGTCTCA
Position: -32
Score: 4
Sequence: AGTGCTGAGACTCACA
Locus tag: jk1197
Name: amtB
Funciton: ammonium transporter NrgA
Locus tag: jk1196
Name: glnK
Funciton: Nitrogen regulatory protein PII
jk1197
amtB
ammonium transporter NrgA
jk1196
glnK
Nitrogen regulatory protein PII
Position: -61
Score: 3.5
Sequence: AGAGTACTACGTCACG
Locus tag: jk0028
Name: cg3220
Funciton: conserved membrane-spanning protein
jk0028
cg3220
conserved membrane-spanning protein
Position: -291
Score: 5
Sequence: TGTGATCTTCGTCACA
Locus tag: jk0416
Name: rpf1
Funciton: Resuscitation-promoting factor Rpf1
jk0416
rpf1
Resuscitation-promoting factor Rpf1
Position: -228
Score: 3.8
Sequence: CGTGATGTGGCTCTCT
Position: -80
Score: 3.7
Sequence: CGTGAGGGAACTCACC
Locus tag: jk1932
Name: glcB
Funciton: Malate synthase G (EC 2.3.3.9)
jk1932
glcB
Malate synthase G (EC 2.3.3.9)
Position: -257
Score: 3.8
Sequence: GGTGGGCTGGGTCACC
Position: -1
Score: 3.4
Sequence: TATGGCTGACCACACA
Locus tag: jk1432
Name: copR
Funciton: Copper homeostasis transcriptional regulator CopR, OmpR family
Locus tag: jk1431
Name: copS
Funciton: Copper homeostasis regulatory system, sensor kinase
Locus tag: jk1430
Name: copZ
Funciton: Copper insertion chaperone and transporter component
Locus tag: jk1429
Name: copB
Funciton: Copper-translocating P-type ATPase (EC 3.6.3.4)
jk1432
copR
Copper homeostasis transcriptional regulator CopR, OmpR family
jk1431
copS
Copper homeostasis regulatory system, sensor kinase
jk1430
copZ
Copper insertion chaperone and transporter component
jk1429
copB
Copper-translocating P-type ATPase (EC 3.6.3.4)
Position: -73
Score: 4.3
Sequence: CGTGATGCATGTCACT
Locus tag: jk0224
Name: fadD10
Funciton: 4-coumarate--CoA ligase 1 (EC 6.2.1.12)
jk0224
fadD10
4-coumarate--CoA ligase 1 (EC 6.2.1.12)
Position: -101
Score: 3.8
Sequence: TGTGATGCGCGCCATT
Locus tag: jk0295
Name: fadE3
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: jk0296
Name: fadE4
Funciton: Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
jk0295
fadE3
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
jk0296
fadE4
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -75
Score: 4.1
Sequence: GGCGATCTACGTCACA
Locus tag: jk0384
Name: actA
Funciton: Butyryl-CoA:acetate-CoA transferase (EC 2.8.3.8)
jk0384
actA
Butyryl-CoA:acetate-CoA transferase (EC 2.8.3.8)
Position: -166
Score: 4
Sequence: CGTGACCAGCGCCACA
Locus tag: jk0985
Name: sufR
Funciton: Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
Locus tag: jk0984
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: jk0983
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: jk0982
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: jk0981
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: jk0980
Name: sufU
Funciton: Iron-sulfur cluster assembly scaffold protein
Locus tag: jk0979
Name: sufT
Funciton: Predicted Fe-S cluster assembly protein
jk0985
sufR
Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
jk0984
sufB
Iron-sulfur cluster assembly protein SufB
jk0983
sufD
Iron-sulfur cluster assembly protein SufD
jk0982
sufC
Iron-sulfur cluster assembly ATPase protein SufC
jk0981
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
jk0980
sufU
Iron-sulfur cluster assembly scaffold protein
jk0979
sufT
Predicted Fe-S cluster assembly protein
Position: -219
Score: 3.8
Sequence: AGTGATCTAGTTGACA
Locus tag: jk0234
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
jk0234
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -190
Score: 4
Sequence: TGTTACGCAGGTCTCA
Locus tag: jk0151
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
jk0151
pck
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Position: -87
Score: 4.6
Sequence: TGTGAGGTGCGCCACA
Locus tag: jk0202
Name: aldA
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
jk0202
aldA
Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -37
Score: 3.5
Sequence: AGTGAACTGAAACTCC
Position: -8
Score: 3.4
Sequence: TGTGATCTGTGTCTAT
Locus tag: jk0250
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: jk0251
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
jk0250
pta
Phosphate acetyltransferase (EC 2.3.1.8)
jk0251
ackA
Acetate kinase (EC 2.7.2.1)
Position: -130
Score: 4.1
Sequence: TGTAATACACATCACT
Locus tag: jk0714
Name: ltsA
Funciton: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
jk0714
ltsA
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
Position: -276
Score: 3.8
Sequence: GGTGACTTGAGTCTCC
Position: -247
Score: 3.6
Sequence: TGTAGTTCCGGTCACA
Position: -142
Score: 4.3
Sequence: TGTGACCGAAGTCACG
Locus tag: jk0075
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
jk0075
fadH
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -106
Score: 4.4
Sequence: TGTGGCGTGAGACACA
Locus tag: jk0160
Name: fadA1
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: jk0159
Name: fadB1
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
jk0160
fadA1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
jk0159
fadB1
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -72
Score: 3.8
Sequence: AATGACTGTCATCACA
Locus tag: jk1192
Name: gdh
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
jk1192
gdh
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -300
Score: 3.8
Sequence: AGAGAGCCACATCACG
Locus tag: jk1933
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
jk1933
aceA
Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
Position: -48
Score: 4.3
Sequence: AGTGAGGCGCACCACA
Locus tag: jk1666
Name: prpD
Funciton: 2-methylcitrate dehydratase (EC 4.2.1.79)
Locus tag: jk1665
Name: prpC
Funciton: 2-methylcitrate synthase (EC 2.3.3.5)
jk1666
prpD
2-methylcitrate dehydratase (EC 4.2.1.79)
jk1665
prpC
2-methylcitrate synthase (EC 2.3.3.5)
Position: -5
Score: 3.4
Sequence: GGTGTATGACTTCACT
Locus tag: jk0450
Name: gabD2
Funciton: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
jk0450
gabD2
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Position: -37
Score: 3.9
Sequence: AGAGTCGCGGATCACA
Locus tag: jk1941
Name: acx
Funciton: Acyl-CoA oxidase 1, peroxisomal (EC 1.3.3.6)
jk1941
acx
Acyl-CoA oxidase 1, peroxisomal (EC 1.3.3.6)
Position: -30
Score: 4
Sequence: GGTGTGCTCGATCACA
Locus tag: jk0822
Name: fabG2
Funciton: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Locus tag: jk0821
Name: fas
Funciton: Acyl dehydratase
jk0822
fabG2
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
jk0821
fas
Acyl dehydratase
Position: -69
Score: 4
Sequence: TGTGATCGAGCACACC
Locus tag: jk0823
Name: fadA2
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
jk0823
fadA2
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -160
Score: 4.5
Sequence: AGAGATGCACGTCACA
Locus tag: jk1462
Name: fadE6
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
jk1462
fadE6
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Position: -85
Score: 4.1
Sequence: AGTGATGTGTATTACA
Locus tag: jk0715
Name: pqo
Funciton: Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)
jk0715
pqo
Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)
Position: -52
Score: 3.7
Sequence: AGTAACGTGCATCACG
Locus tag: jk1915
Name: fadD6
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
jk1915
fadD6
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -29
Score: 3.4
Sequence: AGTGACATAAGTAGCG
Position: -10
Score: 3.4
Sequence: TGTTACTAGAATGACG
Locus tag: jk1964
Name: cg0360
Funciton: Predicted phosphatase
jk1964
cg0360
Predicted phosphatase
Position: -72
Score: 3.8
Sequence: CGTGATGTACGCTACA
Locus tag: jk1972
Name: glxR
Funciton: Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
jk1972
glxR
Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
Position: -227
Score: 4.3
Sequence: CGTGACTTCGGTCACA
Position: -93
Score: 3.8
Sequence: GGAGACTCAAGTCACC
Locus tag: jk0076
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: jk0077
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
jk0076
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
jk0077
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -221
Score: 4.2
Sequence: TGTCATCTGCGTCACA
Locus tag: jk0426
Name: gltA
Funciton: Citrate synthase (EC 2.3.3.1)
jk0426
gltA
Citrate synthase (EC 2.3.3.1)
Position: -138
Score: 4.3
Sequence: CGTGATCTACACCACT
Locus tag: jk0597
Name: fadD5
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
jk0597
fadD5
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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