Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GlxR in Corynebacterium amycolatum SK46

Properties
Regulator type: Transcription factor
TF locus tag: CORAM0001_1594
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Energy metabolism; Carbohydrate metabolism
Effector: Cyclic 3',5'-AMP
Regulog: GlxR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 61
- Operons 38
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 562 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -204
Score: 4.5
Sequence: AGTGACGCAAATCACC
Position: -114
Score: 3.5
Sequence: TGTGACCCAATCGACA
Position: -86
Score: 3.7
Sequence: TGTGAATAGACTTACA
Locus tag: CORAM0001_1589
Name: whiB4
Funciton: Predicted transcriptional regulator, WhiB family
CORAM0001_1589
whiB4
Predicted transcriptional regulator, WhiB family
Position: -79
Score: 4
Sequence: TGTGATGATTCTCACG
Locus tag: CORAM0001_2206
Name: birA
Funciton: Biotin-protein ligase (EC 6.3.4.15)
Locus tag: CORAM0001_2205
Name: cg0815
Funciton: Putative membrane protein
CORAM0001_2206
birA
Biotin-protein ligase (EC 6.3.4.15)
CORAM0001_2205
cg0815
Putative membrane protein
Position: -252
Score: 4.2
Sequence: AGTGGTGCTTATCACA
Locus tag: CORAM0001_1594
Name: glxR
Funciton: Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
CORAM0001_1594
glxR
Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
Position: -268
Score: 3.6
Sequence: TGTTATCCGGGTTACA
Position: -199
Score: 3.7
Sequence: TGTGAGACATGGCACG
Locus tag: CORAM0001_0079
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
CORAM0001_0079
aceA
Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
Position: -129
Score: 3.6
Sequence: AGTAAGACAAATCACT
Locus tag: CORAM0001_1546
Name: fadD5
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
CORAM0001_1546
fadD5
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -46
Score: 3.1
Sequence: AGTGAAATATGCCCCT
Locus tag: CORAM0001_0959
Name: acnR
Funciton: Aconitase gene transcriptional regulator AcnR, TetR family
Locus tag: CORAM0001_0958
Name: gat
Funciton: Glutamine amidotransferase (EC 6.3.5.2)
Locus tag: CORAM0001_0957
Name: gat
Funciton: Glutamine amidotransferase (EC 6.3.5.2)
CORAM0001_0959
acnR
Aconitase gene transcriptional regulator AcnR, TetR family
CORAM0001_0958
gat
Glutamine amidotransferase (EC 6.3.5.2)
CORAM0001_0957
gat
Glutamine amidotransferase (EC 6.3.5.2)
Position: -121
Score: 3.9
Sequence: TGTGTTCCAGGTAACT
Position: -82
Score: 4.2
Sequence: TGTGGTGCATGGCACA
Locus tag: CORAM0001_1954
Name: cg0952
Funciton: Putative membrane protein
Locus tag: CORAM0001_1955
Name: mctC
Funciton: Monocarboxylic acid transporter
CORAM0001_1954
cg0952
Putative membrane protein
CORAM0001_1955
mctC
Monocarboxylic acid transporter
Position: -495
Score: 4.1
Sequence: AGTGGATTAGAACACA
Locus tag: CORAM0001_1616
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
CORAM0001_1616
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -121
Score: 3.4
Sequence: TGTATTTCCCGTCACT
Locus tag: CORAM0001_2172
Name: rpf2
Funciton: Cell wall-binding protein
Locus tag: CORAM0001_2171
Name: ksgA
Funciton: Dimethyladenosine transferase (EC 2.1.1.-)
CORAM0001_2172
rpf2
Cell wall-binding protein
CORAM0001_2171
ksgA
Dimethyladenosine transferase (EC 2.1.1.-)
Position: -43
Score: 3.9
Sequence: GGTGATGACCGCCACA
Locus tag: CORAM0001_0543
Name: cg1143
Funciton: Predicted transcriptional regulator, GntR family
Locus tag: CORAM0001_0542
Name: CORAM0001_0542
Funciton: Hypothetical protein
CORAM0001_0543
cg1143
Predicted transcriptional regulator, GntR family
CORAM0001_0542
CORAM0001_0542
Hypothetical protein
Position: -121
Score: 3.9
Sequence: TGTGGCGGTCATCACC
Locus tag: CORAM0001_0544
Name: cg1142
Funciton: Conserved hypothetical protein
Locus tag: CORAM0001_0545
Name: cg1141
Funciton: Conserved hypothetical protein
CORAM0001_0544
cg1142
Conserved hypothetical protein
CORAM0001_0545
cg1141
Conserved hypothetical protein
Position: -57
Score: 3.4
Sequence: TGTGACAACAGTCGCT
Locus tag: CORAM0001_0460
Name: fum
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
CORAM0001_0460
fum
Fumarate hydratase class II (EC 4.2.1.2)
Position: -25
Score: 4.1
Sequence: AGTTATCTGTGTCACA
Locus tag: CORAM0001_0396
Name: echA3
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
CORAM0001_0396
echA3
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Position: -181
Score: 4.5
Sequence: GGTGATTTGCGTCACT
Locus tag: CORAM0001_1588
Name: pbp1B
Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
CORAM0001_1588
pbp1B
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
Position: -40
Score: 3.9
Sequence: AGTGCCCCCAGTCACA
Locus tag: CORAM0001_1608
Name: cspB
Funciton: Cold-shock DNA-binding domain protein
CORAM0001_1608
cspB
Cold-shock DNA-binding domain protein
Position: -44
Score: 4.2
Sequence: AGTAATTCACGTCACA
Locus tag: CORAM0001_1412
Name: fadA2
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: CORAM0001_1413
Name: fabG2
Funciton: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Locus tag: CORAM0001_1414
Name: fas
Funciton: Acyl dehydratase
CORAM0001_1412
fadA2
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
CORAM0001_1413
fabG2
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
CORAM0001_1414
fas
Acyl dehydratase
Position: -284
Score: 3.4
Sequence: TGCGATAAAAGTCGCA
Position: -96
Score: 3.4
Sequence: GGTGTATTAGACAACA
Locus tag: CORAM0001_0943
Name: mptB
Funciton: Putative membrane protein
Locus tag: CORAM0001_0942
Name: CORAM0001_0942
Funciton: ABC-type multidrug transport system, ATPase component
Locus tag: CORAM0001_0941
Name: CORAM0001_0941
Funciton: ABC drug efflux pump, inner membrane subunit, DrrB family
Locus tag: CORAM0001_0940
Name: ctaA
Funciton: Cytochrome oxidase assembly protein
CORAM0001_0943
mptB
Putative membrane protein
CORAM0001_0942
CORAM0001_0942
ABC-type multidrug transport system, ATPase component
CORAM0001_0941
CORAM0001_0941
ABC drug efflux pump, inner membrane subunit, DrrB family
CORAM0001_0940
ctaA
Cytochrome oxidase assembly protein
Position: -29
Score: 4.3
Sequence: TGTGTCGTGAGTCACC
Locus tag: CORAM0001_1423
Name: gluA
Funciton: Glutamate ABC transporter, ATP-binding protein
Locus tag: CORAM0001_1424
Name: gluB
Funciton: Glutamate ABC transporter, substrate-binding protein
Locus tag: CORAM0001_1425
Name: gluC
Funciton: Glutamate ABC transporter, permease protein 1
Locus tag: CORAM0001_1426
Name: gluD
Funciton: Glutamate ABC transporter, permease protein 2
CORAM0001_1423
gluA
Glutamate ABC transporter, ATP-binding protein
CORAM0001_1424
gluB
Glutamate ABC transporter, substrate-binding protein
CORAM0001_1425
gluC
Glutamate ABC transporter, permease protein 1
CORAM0001_1426
gluD
Glutamate ABC transporter, permease protein 2
Position: -234
Score: 3.7
Sequence: AGTGTAACCGGTCACA
Locus tag: CORAM0001_1037
Name: gdh
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
CORAM0001_1037
gdh
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -123
Score: 3.8
Sequence: TGTGATCTGCCACTCC
Locus tag: CORAM0001_2135
Name: cg1840
Funciton: Conserved hypothetical protein
Locus tag: CORAM0001_2136
Name: cg1839
Funciton: ATPase, AAA family
CORAM0001_2135
cg1840
Conserved hypothetical protein
CORAM0001_2136
cg1839
ATPase, AAA family
Position: -125
Score: 3.5
Sequence: TGTGGATAGCTTCATA
Locus tag: CORAM0001_2075
Name: cg3220
Funciton: conserved membrane-spanning protein
CORAM0001_2075
cg3220
conserved membrane-spanning protein
Position: -331
Score: 4.3
Sequence: CGTGAGCTTTATCACA
Locus tag: CORAM0001_1607
Name: rpf1
Funciton: Resuscitation-promoting factor Rpf1
CORAM0001_1607
rpf1
Resuscitation-promoting factor Rpf1
Position: -70
Score: 4
Sequence: TGTGACAACGGTCACG
Locus tag: CORAM0001_1295
Name: fadE3
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: CORAM0001_1294
Name: fadE4
Funciton: Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
CORAM0001_1295
fadE3
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
CORAM0001_1294
fadE4
Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -69
Score: 4.5
Sequence: TGTGGCACGAGTCACA
Locus tag: CORAM0001_1521
Name: aldA
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3)
CORAM0001_1521
aldA
Aldehyde dehydrogenase (EC 1.2.1.3)
Position: -107
Score: 4.1
Sequence: AGTGCGCCGAATCACA
Locus tag: CORAM0001_0080
Name: glcB
Funciton: Malate synthase G (EC 2.3.3.9)
CORAM0001_0080
glcB
Malate synthase G (EC 2.3.3.9)
Position: -298
Score: 4.2
Sequence: TGCGATATACTTCACA
Locus tag: CORAM0001_1322
Name: metE
Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
CORAM0001_1322
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: 3
Score: 3.4
Sequence: TCTGACCAGCCTCACT
Locus tag: CORAM0001_1826
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
CORAM0001_1826
fadH
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -44
Score: 4.2
Sequence: AGTGACGCACGACACT
Locus tag: CORAM0001_1995
Name: fadA1
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: CORAM0001_1996
Name: fadB1
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
CORAM0001_1995
fadA1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
CORAM0001_1996
fadB1
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -123
Score: 4.4
Sequence: CGTGACTTGTCTCACA
Locus tag: CORAM0001_0292
Name: icd
Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
CORAM0001_0292
icd
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -82
Score: 3.5
Sequence: TGTGAAAATCCCCACC
Locus tag: CORAM0001_0083
Name: sdhC
Funciton: Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0084
Name: sdhA
Funciton: Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0085
Name: sdhB
Funciton: Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0086
Name: cg0448
Funciton: Conserved hypothetical protein
CORAM0001_0083
sdhC
Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
CORAM0001_0084
sdhA
Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
CORAM0001_0085
sdhB
Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
CORAM0001_0086
cg0448
Conserved hypothetical protein
Position: -470
Score: 3.9
Sequence: TGTGATATCGACCATA
Position: -20
Score: 3.5
Sequence: TGAGAAGGGTATCTCA
Locus tag: CORAM0001_0706
Name: leuB
Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
CORAM0001_0706
leuB
3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Position: -170
Score: 4.1
Sequence: TGTAAGGTGACTCACA
Position: -141
Score: 3.5
Sequence: AATGATTTGGGACTCA
Locus tag: CORAM0001_1353
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: CORAM0001_1352
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
CORAM0001_1353
pta
Phosphate acetyltransferase (EC 2.3.1.8)
CORAM0001_1352
ackA
Acetate kinase (EC 2.7.2.1)
Position: -63
Score: 4
Sequence: CGTGAGAATCATCACA
Locus tag: CORAM0001_2207
Name: accD1
Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
CORAM0001_2207
accD1
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
Position: -1
Score: 3.4
Sequence: TATGACTGATTTCACG
Locus tag: CORAM0001_0315
Name: gabD2
Funciton: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
CORAM0001_0315
gabD2
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Position: -155
Score: 4.3
Sequence: AGTGTCTCTCATCACA
Locus tag: CORAM0001_0453
Name: fadE6
Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
CORAM0001_0453
fadE6
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Position: -222
Score: 3.4
Sequence: GGTGCTGTGGATAACT
Locus tag: CORAM0001_2242
Name: dnaB
Funciton: Replicative DNA helicase (EC 3.6.1.-)
CORAM0001_2242
dnaB
Replicative DNA helicase (EC 3.6.1.-)
Position: -346
Score: 4.7
Sequence: TGTGATGTTCATCACC
Locus tag: CORAM0001_1183
Name: fas-IA
Funciton: [Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61)
Locus tag: CORAM0001_1182
Name: acpS
Funciton: Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)
CORAM0001_1183
fas-IA
[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61)
CORAM0001_1182
acpS
Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)
Position: -1
Score: 3.8
Sequence: AGTGAATTCCACCACT
Locus tag: CORAM0001_0928
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
CORAM0001_0928
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise