Regulon of GlxR in Corynebacterium amycolatum SK46
| Regulator type: | Transcription factor |
| TF locus tag: | CORAM0001_1594 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Energy metabolism; Carbohydrate metabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | GlxR - Corynebacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 61 |
| - Operons | 38 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Energy metabolism
- By pathway - Carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -204
Score: 4.5 Sequence: AGTGACGCAAATCACC
Position: -114
Score: 3.5 Sequence: TGTGACCCAATCGACA
Position: -86
Score: 3.7 Sequence: TGTGAATAGACTTACA
Locus tag: CORAM0001_1589
Name: whiB4 Funciton: Predicted transcriptional regulator, WhiB family |
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whiB4
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Predicted transcriptional regulator, WhiB family
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Position: -79
Score: 4 Sequence: TGTGATGATTCTCACG
Locus tag: CORAM0001_2206
Name: birA Funciton: Biotin-protein ligase (EC 6.3.4.15)
Locus tag: CORAM0001_2205
Name: cg0815 Funciton: Putative membrane protein |
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birA
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Biotin-protein ligase (EC 6.3.4.15)
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cg0815
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Putative membrane protein
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Position: -252
Score: 4.2 Sequence: AGTGGTGCTTATCACA
Locus tag: CORAM0001_1594
Name: glxR Funciton: Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family |
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glxR
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Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
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Position: -268
Score: 3.6 Sequence: TGTTATCCGGGTTACA
Position: -199
Score: 3.7 Sequence: TGTGAGACATGGCACG
Locus tag: CORAM0001_0079
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30) |
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aceA
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Isocitrate lyase (EC 4.1.3.1) / Methylisocitrate lyase (EC 4.1.3.30)
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Position: -129
Score: 3.6 Sequence: AGTAAGACAAATCACT
Locus tag: CORAM0001_1546
Name: fadD5 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD5
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -46
Score: 3.1 Sequence: AGTGAAATATGCCCCT
Locus tag: CORAM0001_0959
Name: acnR Funciton: Aconitase gene transcriptional regulator AcnR, TetR family
Locus tag: CORAM0001_0958
Name: gat Funciton: Glutamine amidotransferase (EC 6.3.5.2)
Locus tag: CORAM0001_0957
Name: gat Funciton: Glutamine amidotransferase (EC 6.3.5.2) |
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acnR
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Aconitase gene transcriptional regulator AcnR, TetR family
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gat
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Glutamine amidotransferase (EC 6.3.5.2)
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gat
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Glutamine amidotransferase (EC 6.3.5.2)
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Position: -121
Score: 3.9 Sequence: TGTGTTCCAGGTAACT
Position: -82
Score: 4.2 Sequence: TGTGGTGCATGGCACA
Locus tag: CORAM0001_1954
Name: cg0952 Funciton: Putative membrane protein
Locus tag: CORAM0001_1955
Name: mctC Funciton: Monocarboxylic acid transporter |
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cg0952
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Putative membrane protein
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mctC
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Monocarboxylic acid transporter
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Position: -495
Score: 4.1 Sequence: AGTGGATTAGAACACA
Locus tag: CORAM0001_1616
Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52) |
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serC
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Phosphoserine aminotransferase (EC 2.6.1.52)
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Position: -121
Score: 3.4 Sequence: TGTATTTCCCGTCACT
Locus tag: CORAM0001_2172
Name: rpf2 Funciton: Cell wall-binding protein
Locus tag: CORAM0001_2171
Name: ksgA Funciton: Dimethyladenosine transferase (EC 2.1.1.-) |
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rpf2
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Cell wall-binding protein
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ksgA
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Dimethyladenosine transferase (EC 2.1.1.-)
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Position: -43
Score: 3.9 Sequence: GGTGATGACCGCCACA
Locus tag: CORAM0001_0543
Name: cg1143 Funciton: Predicted transcriptional regulator, GntR family
Locus tag: CORAM0001_0542
Name: CORAM0001_0542 Funciton: Hypothetical protein |
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cg1143
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Predicted transcriptional regulator, GntR family
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CORAM0001_0542
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Hypothetical protein
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Position: -121
Score: 3.9 Sequence: TGTGGCGGTCATCACC
Locus tag: CORAM0001_0544
Name: cg1142 Funciton: Conserved hypothetical protein
Locus tag: CORAM0001_0545
Name: cg1141 Funciton: Conserved hypothetical protein |
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cg1142
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Conserved hypothetical protein
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cg1141
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Conserved hypothetical protein
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Position: -57
Score: 3.4 Sequence: TGTGACAACAGTCGCT
Locus tag: CORAM0001_0460
Name: fum Funciton: Fumarate hydratase class II (EC 4.2.1.2) |
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fum
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Fumarate hydratase class II (EC 4.2.1.2)
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Position: -25
Score: 4.1 Sequence: AGTTATCTGTGTCACA
Locus tag: CORAM0001_0396
Name: echA3 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
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echA3
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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Position: -181
Score: 4.5 Sequence: GGTGATTTGCGTCACT
Locus tag: CORAM0001_1588
Name: pbp1B Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) |
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pbp1B
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Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
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Position: -40
Score: 3.9 Sequence: AGTGCCCCCAGTCACA
Locus tag: CORAM0001_1608
Name: cspB Funciton: Cold-shock DNA-binding domain protein |
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cspB
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Cold-shock DNA-binding domain protein
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Position: -44
Score: 4.2 Sequence: AGTAATTCACGTCACA
Locus tag: CORAM0001_1412
Name: fadA2 Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: CORAM0001_1413
Name: fabG2 Funciton: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Locus tag: CORAM0001_1414
Name: fas Funciton: Acyl dehydratase |
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fadA2
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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fabG2
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3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
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fas
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Acyl dehydratase
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Position: -284
Score: 3.4 Sequence: TGCGATAAAAGTCGCA
Position: -96
Score: 3.4 Sequence: GGTGTATTAGACAACA
Locus tag: CORAM0001_0943
Name: mptB Funciton: Putative membrane protein
Locus tag: CORAM0001_0942
Name: CORAM0001_0942 Funciton: ABC-type multidrug transport system, ATPase component
Locus tag: CORAM0001_0941
Name: CORAM0001_0941 Funciton: ABC drug efflux pump, inner membrane subunit, DrrB family
Locus tag: CORAM0001_0940
Name: ctaA Funciton: Cytochrome oxidase assembly protein |
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mptB
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Putative membrane protein
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CORAM0001_0942
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ABC-type multidrug transport system, ATPase component
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CORAM0001_0941
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ABC drug efflux pump, inner membrane subunit, DrrB family
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ctaA
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Cytochrome oxidase assembly protein
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Position: -29
Score: 4.3 Sequence: TGTGTCGTGAGTCACC
Locus tag: CORAM0001_1423
Name: gluA Funciton: Glutamate ABC transporter, ATP-binding protein
Locus tag: CORAM0001_1424
Name: gluB Funciton: Glutamate ABC transporter, substrate-binding protein
Locus tag: CORAM0001_1425
Name: gluC Funciton: Glutamate ABC transporter, permease protein 1
Locus tag: CORAM0001_1426
Name: gluD Funciton: Glutamate ABC transporter, permease protein 2 |
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gluA
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Glutamate ABC transporter, ATP-binding protein
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gluB
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Glutamate ABC transporter, substrate-binding protein
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gluC
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Glutamate ABC transporter, permease protein 1
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gluD
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Glutamate ABC transporter, permease protein 2
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Position: -234
Score: 3.7 Sequence: AGTGTAACCGGTCACA
Locus tag: CORAM0001_1037
Name: gdh Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
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gdh
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NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
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Position: -123
Score: 3.8 Sequence: TGTGATCTGCCACTCC
Locus tag: CORAM0001_2135
Name: cg1840 Funciton: Conserved hypothetical protein
Locus tag: CORAM0001_2136
Name: cg1839 Funciton: ATPase, AAA family |
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cg1840
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Conserved hypothetical protein
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cg1839
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ATPase, AAA family
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Position: -125
Score: 3.5 Sequence: TGTGGATAGCTTCATA
Locus tag: CORAM0001_2075
Name: cg3220 Funciton: conserved membrane-spanning protein |
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cg3220
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conserved membrane-spanning protein
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Position: -331
Score: 4.3 Sequence: CGTGAGCTTTATCACA
Locus tag: CORAM0001_1607
Name: rpf1 Funciton: Resuscitation-promoting factor Rpf1 |
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rpf1
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Resuscitation-promoting factor Rpf1
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Position: -70
Score: 4 Sequence: TGTGACAACGGTCACG
Locus tag: CORAM0001_1295
Name: fadE3 Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Locus tag: CORAM0001_1294
Name: fadE4 Funciton: Probable acyl-CoA dehydrogenase (EC 1.3.99.3) |
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fadE3
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Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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fadE4
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Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -69
Score: 4.5 Sequence: TGTGGCACGAGTCACA
Locus tag: CORAM0001_1521
Name: aldA Funciton: Aldehyde dehydrogenase (EC 1.2.1.3) |
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aldA
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Aldehyde dehydrogenase (EC 1.2.1.3)
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Position: -107
Score: 4.1 Sequence: AGTGCGCCGAATCACA
Locus tag: CORAM0001_0080
Name: glcB Funciton: Malate synthase G (EC 2.3.3.9) |
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glcB
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Malate synthase G (EC 2.3.3.9)
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Position: -298
Score: 4.2 Sequence: TGCGATATACTTCACA
Locus tag: CORAM0001_1322
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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metE
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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Position: 3
Score: 3.4 Sequence: TCTGACCAGCCTCACT
Locus tag: CORAM0001_1826
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -44
Score: 4.2 Sequence: AGTGACGCACGACACT
Locus tag: CORAM0001_1995
Name: fadA1 Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: CORAM0001_1996
Name: fadB1 Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadA1
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) / Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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fadB1
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Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -123
Score: 4.4 Sequence: CGTGACTTGTCTCACA
Locus tag: CORAM0001_0292
Name: icd Funciton: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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icd
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Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Position: -82
Score: 3.5 Sequence: TGTGAAAATCCCCACC
Locus tag: CORAM0001_0083
Name: sdhC Funciton: Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0084
Name: sdhA Funciton: Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0085
Name: sdhB Funciton: Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
Locus tag: CORAM0001_0086
Name: cg0448 Funciton: Conserved hypothetical protein |
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sdhC
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Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
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sdhA
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Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
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sdhB
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Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
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cg0448
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Conserved hypothetical protein
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Position: -470
Score: 3.9 Sequence: TGTGATATCGACCATA
Position: -20
Score: 3.5 Sequence: TGAGAAGGGTATCTCA
Locus tag: CORAM0001_0706
Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
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leuB
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3-isopropylmalate dehydrogenase (EC 1.1.1.85)
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Position: -170
Score: 4.1 Sequence: TGTAAGGTGACTCACA
Position: -141
Score: 3.5 Sequence: AATGATTTGGGACTCA
Locus tag: CORAM0001_1353
Name: pta Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: CORAM0001_1352
Name: ackA Funciton: Acetate kinase (EC 2.7.2.1) |
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pta
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Phosphate acetyltransferase (EC 2.3.1.8)
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ackA
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Acetate kinase (EC 2.7.2.1)
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Position: -63
Score: 4 Sequence: CGTGAGAATCATCACA
Locus tag: CORAM0001_2207
Name: accD1 Funciton: Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) |
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accD1
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Propionyl-CoA carboxylase beta chain (EC 6.4.1.3)
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Position: -1
Score: 3.4 Sequence: TATGACTGATTTCACG
Locus tag: CORAM0001_0315
Name: gabD2 Funciton: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabD2
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Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Position: -155
Score: 4.3 Sequence: AGTGTCTCTCATCACA
Locus tag: CORAM0001_0453
Name: fadE6 Funciton: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
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fadE6
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Butyryl-CoA dehydrogenase (EC 1.3.99.2)
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Position: -222
Score: 3.4 Sequence: GGTGCTGTGGATAACT
Locus tag: CORAM0001_2242
Name: dnaB Funciton: Replicative DNA helicase (EC 3.6.1.-) |
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dnaB
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Replicative DNA helicase (EC 3.6.1.-)
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Position: -346
Score: 4.7 Sequence: TGTGATGTTCATCACC
Locus tag: CORAM0001_1183
Name: fas-IA Funciton: [Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61)
Locus tag: CORAM0001_1182
Name: acpS Funciton: Holo-[acyl-carrier protein] synthase (EC 2.7.8.7) |
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fas-IA
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[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61)
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acpS
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Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)
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Position: -1
Score: 3.8 Sequence: AGTGAATTCCACCACT
Locus tag: CORAM0001_0928
Name: tpiA Funciton: Triosephosphate isomerase (EC 5.3.1.1) |
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tpiA
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Triosephosphate isomerase (EC 5.3.1.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |