Regulon of ExuR in Clostridium acetobutylicum ATCC 824
| Regulator type: | Transcription factor |
| TF locus tag: | CAC0693 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Regulog: | ExuR - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - LacI
- By effector - Galacturonate
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -130
Score: 5.4 Sequence: AAATGTTCACGTGTTCAAAA
Position: -42
Score: 5.2 Sequence: TTTTGAACACGTGAACGTAA
Locus tag: CAC0695
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: CAC0696
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7) |
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uxaB
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Altronate oxidoreductase (EC 1.1.1.58)
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uxaA
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Altronate hydrolase (EC 4.2.1.7)
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Position: -121
Score: 5.7 Sequence: AGTTGTTCACGTTCACAAAA
Locus tag: CAC0692
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: CAC0693
Name: exuR Funciton: Hexuronate utilization transcriptional repressor ExuR, LacI family
Locus tag: CAC0694
Name: uxaT Funciton: Galacturonate transporter UxaT |
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uxaC
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Uronate isomerase (EC 5.3.1.12)
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exuR
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Hexuronate utilization transcriptional repressor ExuR, LacI family
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uxaT
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Galacturonate transporter UxaT
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Position: -46
Score: 6.1 Sequence: AAATGTTAACGTTAACATAA
Locus tag: CAP0056
Name: pell Funciton: Pectate lyase, secreted, polysaccharide lyase family |
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pell
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Pectate lyase, secreted, polysaccharide lyase family
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Position: -51
Score: 5.3 Sequence: TTTTGTTAACGTTATCTGTA
Position: -38
Score: 4.5 Sequence: ATCTGTATACGATAACAATT
Locus tag: CAC2774
Name: mcp Funciton: Methyl-accepting chemotaxis protein with HAMP domain |
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mcp
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Methyl-accepting chemotaxis protein with HAMP domain
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Position: -106
Score: 4.5 Sequence: TAATGTAATTGTTAACGTTA
Position: -100
Score: 5.4 Sequence: AATTGTTAACGTTAAACAAA
Position: -42
Score: 4.6 Sequence: TATGTTTATCGTAAACAAAA
Locus tag: CAC0804
Name: pelA Funciton: Exopolygalacturonate lyase |
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pelA
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Exopolygalacturonate lyase
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Position: -167
Score: 5.7 Sequence: GTTTGTTAACGATAACAATA
Locus tag: CAC0812
Name: pelL Funciton: Pectate transeliminase, secreted |
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pelL
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Pectate transeliminase, secreted
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Position: -195
Score: 5.7 Sequence: CTTTGTTAACGTTAACGTAA
Position: -72
Score: 5.7 Sequence: TATTGATAACGTGAACACTA
Locus tag: CAC0359
Name: rhiN Funciton: Rhamnogalacturonides degradation protein RhiN
Locus tag: CAC0358
Name: PF01522 Funciton: Polysaccharide deacetylase
Locus tag: CAC0357
Name: rhiT Funciton: Putative rhamnogalacturonide transporter
Locus tag: CAC0356
Name: PF02589 Funciton: Domain of unknown function DUF162
Locus tag: CAC0355
Name: pgl Funciton: Polygalacturonase (EC 3.2.1.15) |
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rhiN
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Rhamnogalacturonides degradation protein RhiN
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PF01522
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Polysaccharide deacetylase
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rhiT
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Putative rhamnogalacturonide transporter
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PF02589
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Domain of unknown function DUF162
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pgl
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Polygalacturonase (EC 3.2.1.15)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |