Regulon of RhaR in Arthrobacter sp. FB24
| Regulator type: | Transcription factor |
| TF locus tag: | Arth_3308 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Micrococcineae |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 7 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By TF family - LacI
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -203
Score: 5.8 Sequence: TCTTTGAATCGTTTCATTGT
Position: -190
Score: 5.5 Sequence: TCATTGTTACGATTCAAAGT
Locus tag: Arth_3308
Name: rhaR Funciton: Transcriptional regulator of rhamnose utilization, LacI family |
|||
|
rhaR
|
Transcriptional regulator of rhamnose utilization, LacI family
|
||
|
Position: -57
Score: 5.5 Sequence: ACTTTGAATCGTAACAATGA
Position: -44
Score: 5.8 Sequence: ACAATGAAACGATTCAAAGA
Locus tag: Arth_3307
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: Arth_3306
Name: rhaI Funciton: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Locus tag: Arth_3305
Name: rhaEW Funciton: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Arth_3304
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5) |
|||
|
rhaM
|
L-rhamnose mutarotase
|
||
|
rhaI
|
Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
|
||
|
rhaEW
|
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
|
||
|
rhaB
|
Rhamnulokinase (EC 2.7.1.5)
|
||
|
Position: -155
Score: 5.1 Sequence: TGAATGAAACGTATCAATAT
Locus tag: Arth_3316
Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Locus tag: Arth_3315
Name: yteP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Locus tag: Arth_3314
Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Locus tag: Arth_3313
Name: yesT Funciton: Rhamnogalacturonan acetylesterase
Locus tag: Arth_3312
Name: yesU Funciton: hypothetical protein |
|||
|
ytcQ
|
Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
|
||
|
yteP
|
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
|
||
|
ytcP
|
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
|
||
|
yesT
|
Rhamnogalacturonan acetylesterase
|
||
|
yesU
|
hypothetical protein
|
||
|
Position: -135
Score: 5.4 Sequence: ATTATGTAACGATTCAAAAT
Locus tag: Arth_3317
Name: yteU Funciton: Putative membrane enzyme for rhamnogalaturonan degradation |
|||
|
yteU
|
Putative membrane enzyme for rhamnogalaturonan degradation
|
||
|
Position: -100
Score: 5.1 Sequence: ATATTGTATCGTTTCAGAAA
Locus tag: Arth_3324
Name: rhiN Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: Arth_3323
Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: Arth_3322
Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Arth_3321
Name: AAur_3306 Funciton: hypothetical protein
Locus tag: Arth_3320
Name: AAur_3305 Funciton: putative transmembrane efflux protein (MFS) |
|||
|
rhiN
|
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
|
||
|
rhiF
|
Putatuve rhamnogalacturonides ABC transporter, permease component 1
|
||
|
rhiG
|
Putatuve rhamnogalacturonides ABC transporter, permease component 2
|
||
|
AAur_3306
|
hypothetical protein
|
||
|
AAur_3305
|
putative transmembrane efflux protein (MFS)
|
||
|
Position: -193
Score: 5.4 Sequence: ATTTTGAATCGTTACATAAT
Locus tag: Arth_3318
Name: AAur_3304 Funciton: oxidoreductase domain protein |
|||
|
AAur_3304
|
oxidoreductase domain protein
|
||
|
Position: -116
Score: 5.4 Sequence: GCTTTGAATCGTTACATTGC
Locus tag: Arth_1969
Name: ramA1 Funciton: alpha-L-rhamnosidase |
|||
|
ramA1
|
alpha-L-rhamnosidase
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |