Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RhaR in Arthrobacter chlorophenolicus A6

Properties
Regulator type: Transcription factor
TF locus tag: Achl_3109
Regulator family: LacI
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Regulog: RhaR - Micrococcineae
Statistics of regulated genes:
- Genes 19
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -126
Score: 5.5
Sequence: TATTTGAATCGTTTCATTGG
Position: -113
Score: 5.3
Sequence: TCATTGGTACGATTCAAAGT
Locus tag: Achl_3109
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, LacI family
Achl_3109
rhaR
Transcriptional regulator of rhamnose utilization, LacI family
Position: -57
Score: 5.3
Sequence: ACTTTGAATCGTACCAATGA
Position: -44
Score: 5.5
Sequence: CCAATGAAACGATTCAAATA
Locus tag: Achl_3108
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Achl_3107
Name: rhaI
Funciton: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Locus tag: Achl_3106
Name: rhaEW
Funciton: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Achl_3105
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
Achl_3108
rhaM
L-rhamnose mutarotase
Achl_3107
rhaI
Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Achl_3106
rhaEW
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Achl_3105
rhaB
Rhamnulokinase (EC 2.7.1.5)
Position: -136
Score: 5.2
Sequence: GCTGTGTAACGATTCAAAAA
Position: -68
Score: 4.8
Sequence: GAAATGAAACGTATCAACCT
Locus tag: Achl_3116
Name: yteU
Funciton: Putative membrane enzyme for rhamnogalaturonan degradation
Locus tag: Achl_3115
Name: null
Funciton: hypothetical protein
Locus tag: Achl_3114
Name: ytcQ
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Locus tag: Achl_3113
Name: yteP
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Locus tag: Achl_3112
Name: ytcP
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Locus tag: Achl_3111
Name: yesT
Funciton: Rhamnogalacturonan acetylesterase
Locus tag: Achl_3110
Name: yesU
Funciton: hypothetical protein
Achl_3116
yteU
Putative membrane enzyme for rhamnogalaturonan degradation
Achl_3115
hypothetical protein
Achl_3114
ytcQ
Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Achl_3113
yteP
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Achl_3112
ytcP
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Achl_3111
yesT
Rhamnogalacturonan acetylesterase
Achl_3110
yesU
hypothetical protein
Position: -92
Score: 4.9
Sequence: ATATTGTATCGTTTCAGAAG
Locus tag: Achl_3124
Name: rhiN
Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: Achl_3123
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: Achl_3122
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Achl_3121
Name: AAur_3306
Funciton: hypothetical protein
Locus tag: Achl_3120
Name: AAur_3305
Funciton: putative transmembrane efflux protein (MFS)
Achl_3124
rhiN
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Achl_3123
rhiF
Putatuve rhamnogalacturonides ABC transporter, permease component 1
Achl_3122
rhiG
Putatuve rhamnogalacturonides ABC transporter, permease component 2
Achl_3121
AAur_3306
hypothetical protein
Achl_3120
AAur_3305
putative transmembrane efflux protein (MFS)
Position: -123
Score: 5.2
Sequence: TTTTTGAATCGTTACACAGC
Locus tag: Achl_3117
Name: AAur_3304
Funciton: oxidoreductase domain protein
Locus tag: Achl_3118
Name: ramA1
Funciton: alpha-L-rhamnosidase
Achl_3117
AAur_3304
oxidoreductase domain protein
Achl_3118
ramA1
alpha-L-rhamnosidase
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