Regulon of RhaR in Arthrobacter chlorophenolicus A6
| Regulator type: | Transcription factor |
| TF locus tag: | Achl_3109 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Micrococcineae |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By TF family - LacI
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -126
Score: 5.5 Sequence: TATTTGAATCGTTTCATTGG
Position: -113
Score: 5.3 Sequence: TCATTGGTACGATTCAAAGT
Locus tag: Achl_3109
Name: rhaR Funciton: Transcriptional regulator of rhamnose utilization, LacI family |
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rhaR
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Transcriptional regulator of rhamnose utilization, LacI family
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Position: -57
Score: 5.3 Sequence: ACTTTGAATCGTACCAATGA
Position: -44
Score: 5.5 Sequence: CCAATGAAACGATTCAAATA
Locus tag: Achl_3108
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: Achl_3107
Name: rhaI Funciton: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Locus tag: Achl_3106
Name: rhaEW Funciton: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Achl_3105
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5) |
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rhaM
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L-rhamnose mutarotase
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rhaI
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Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
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rhaEW
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Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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Position: -136
Score: 5.2 Sequence: GCTGTGTAACGATTCAAAAA
Position: -68
Score: 4.8 Sequence: GAAATGAAACGTATCAACCT
Locus tag: Achl_3116
Name: yteU Funciton: Putative membrane enzyme for rhamnogalaturonan degradation
Locus tag: Achl_3115
Name: null Funciton: hypothetical protein
Locus tag: Achl_3114
Name: ytcQ Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Locus tag: Achl_3113
Name: yteP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Locus tag: Achl_3112
Name: ytcP Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Locus tag: Achl_3111
Name: yesT Funciton: Rhamnogalacturonan acetylesterase
Locus tag: Achl_3110
Name: yesU Funciton: hypothetical protein |
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yteU
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Putative membrane enzyme for rhamnogalaturonan degradation
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hypothetical protein
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ytcQ
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Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
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yteP
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Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
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ytcP
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Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
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yesT
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Rhamnogalacturonan acetylesterase
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yesU
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hypothetical protein
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Position: -92
Score: 4.9 Sequence: ATATTGTATCGTTTCAGAAG
Locus tag: Achl_3124
Name: rhiN Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: Achl_3123
Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: Achl_3122
Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Achl_3121
Name: AAur_3306 Funciton: hypothetical protein
Locus tag: Achl_3120
Name: AAur_3305 Funciton: putative transmembrane efflux protein (MFS) |
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rhiN
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Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
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rhiF
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Putatuve rhamnogalacturonides ABC transporter, permease component 1
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rhiG
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Putatuve rhamnogalacturonides ABC transporter, permease component 2
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AAur_3306
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hypothetical protein
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AAur_3305
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putative transmembrane efflux protein (MFS)
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Position: -123
Score: 5.2 Sequence: TTTTTGAATCGTTACACAGC
Locus tag: Achl_3117
Name: AAur_3304 Funciton: oxidoreductase domain protein
Locus tag: Achl_3118
Name: ramA1 Funciton: alpha-L-rhamnosidase |
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AAur_3304
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oxidoreductase domain protein
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ramA1
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alpha-L-rhamnosidase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |