Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PckR in Mesorhizobium loti MAFF303099

Properties
Regulator type: Transcription factor
TF locus tag: mlr5161
Regulator family: LacI
Regulation mode: repressor
Biological process: Central carbohydrate metabolism
Effector:
Regulog: PckR - Rhizobiales
Statistics of regulated genes:
- Genes 25
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -40
Score: 5
Sequence: TTCCTAAATCGATTGGAATT
Locus tag: mll3821
Name: COG5480
Funciton: Predicted integral membrane protein
Locus tag: mll3819
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
mll3821
COG5480
Predicted integral membrane protein
mll3819
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -160
Score: 5
Sequence: AATTCCAATCGATTTAGGAA
Locus tag: mlr3822
Name: COG3931
Funciton: Predicted N-formylglutamate amidohydrolase
Locus tag: mlr3823
Name: COG3492
Funciton: hypothetical protein
mlr3822
COG3931
Predicted N-formylglutamate amidohydrolase
mlr3823
COG3492
hypothetical protein
Position: -30
Score: 4.4
Sequence: TCTGCTAATCGGTTGAAATG
Locus tag: mlr2994
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
mlr2994
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -48
Score: 5.4
Sequence: CATCTAAATCGATTGAATAT
Locus tag: mlr7586
Name: glgP
Funciton: Glycogen phosphorylase (EC 2.4.1.1)
Locus tag: mlr7587
Name: glgB
Funciton: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Locus tag: mlr7588
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: mlr7589
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Locus tag: mlr7590
Name: pgm
Funciton: Phosphoglucomutase (EC 5.4.2.2)
mlr7586
glgP
Glycogen phosphorylase (EC 2.4.1.1)
mlr7587
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
mlr7588
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
mlr7589
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
mlr7590
pgm
Phosphoglucomutase (EC 5.4.2.2)
Position: -179
Score: 4.9
Sequence: CCATCTAACCGATTGAAAAT
Locus tag: mll4308
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: mll4306
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: mll4305
Name: null
Funciton: Mannose-6-phosphate isomerase
Locus tag: mll4304
Name: RL4437
Funciton: hypothetical protein
Locus tag: mll4303
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: mll4302
Name: null
Funciton: unknown protein
Locus tag: mll4301
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: mll4300
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
mll4308
mdh
Malate dehydrogenase (EC 1.1.1.37)
mll4306
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
mll4305
Mannose-6-phosphate isomerase
mll4304
RL4437
hypothetical protein
mll4303
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
mll4302
unknown protein
mll4301
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
mll4300
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -62
Score: 5.6
Sequence: AATTTAAATCGATTAGAATA
Locus tag: mll6516
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: mll6514
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: mll6512
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
mll6516
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
mll6514
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
mll6512
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -86
Score: 4.7
Sequence: ACTTTCAATCGATTCGAGCT
Locus tag: mlr3754
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
mlr3754
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
Position: -152
Score: 4.9
Sequence: ATATATAAACGATTTAAACA
Position: -122
Score: 5.1
Sequence: TTTTTAAATCGATTAATGAT
Locus tag: mlr5096
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
mlr5096
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -128
Score: 5
Sequence: TGGTTCAATCGATTGATATT
Locus tag: mll0929
Name: glpX
Funciton: Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)
mll0929
glpX
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)
Position: -104
Score: 5.3
Sequence: GATTTAAATCGGTTTAAACC
Locus tag: mll3969
Name: pyc
Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
mll3969
pyc
Pyruvate carboxyl transferase (EC 6.4.1.1)
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