Regulon of TPP in Gardnerella vaginalis 409-05

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Bifidobacteriaceae
Under regulation:
- Genes	11
- Operons	5

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -288 Score: 50.1 Sequence: TCAATCGACACGGGT... Locus tag: HMPREF0424_0412 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: HMPREF0424_0414 Name: ykoDC Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine / Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	HMPREF0424_0412	ykoE	Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	HMPREF0424_0414	ykoDC	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine / Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Position: -93 Score: 46.8 Sequence: TACGAAACGCGGGAG... Locus tag: HMPREF0424_1286 Name: thiO Funciton: Glycine oxidase ThiO (EC 1.4.3.19) Locus tag: HMPREF0424_1285 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: HMPREF0424_1284 Name: thiG Funciton: Thiazole biosynthesis protein ThiG Locus tag: HMPREF0424_1283 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF
	HMPREF0424_1286	thiO	Glycine oxidase ThiO (EC 1.4.3.19)
	HMPREF0424_1285	thiS	Sulfur carrier protein ThiS
	HMPREF0424_1284	thiG	Thiazole biosynthesis protein ThiG
	HMPREF0424_1283	thiF	Sulfur carrier protein adenylyltransferase ThiF
Position: -98 Score: 57 Sequence: AGGATGGTTCGGAGT... Locus tag: HMPREF0424_1158 Name: thiME Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	HMPREF0424_1158	thiME	Hydroxyethylthiazole kinase (EC 2.7.1.50) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Position: -115 Score: 54 Sequence: GACCTCAGACACGGG... Locus tag: HMPREF0424_0660 Name: thiP Funciton: Thiamin ABC transporter, permease protein Locus tag: HMPREF0424_0659 Name: thiB Funciton: Thiamin ABC transporter, substrate-binding component Locus tag: HMPREF0424_0658 Name: thiQ Funciton: Thiamin ABC transporter, ATPase component
	HMPREF0424_0660	thiP	Thiamin ABC transporter, permease protein
	HMPREF0424_0659	thiB	Thiamin ABC transporter, substrate-binding component
	HMPREF0424_0658	thiQ	Thiamin ABC transporter, ATPase component
Position: -102 Score: 61.8 Sequence: ACATTTTGCAGGGGT... Locus tag: HMPREF0424_0892 Name: thiEC Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC
	HMPREF0424_0892	thiEC	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD