Regulon of HTCS_Ara-1 in Bacteroides eggerthii DSM 20697
| Regulator type: | Transcription factor |
| TF locus tag: | BACEGG_01541 |
| Regulator family: | [Other] |
| Regulation mode: | activator |
| Biological process: | Arabinan utilization |
| Effector: | Arabinan |
| Regulog: | HTCS_Ara-1 - Bacteroidaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - [Other]
- By effector - Arabinan
- By pathway - Arabinan utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -285
Score: 7.4 Sequence: TGTCCACCTTAAAAGGTCATATATCCACCT
Locus tag: BACEGG_01542
Name: abn2 Funciton: Arabinan endo-1,5-alpha-L-arabinosidase
Locus tag: BACEGG_01543
Name: abf2 Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55)
Locus tag: BACEGG_01544
Name: GH43 Funciton: Hypothetical glycoside hydrolase, family 43, similar to arabinosidase |
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abn2
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Arabinan endo-1,5-alpha-L-arabinosidase
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abf2
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Alpha-N-arabinofuranosidase (EC 3.2.1.55)
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GH43
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Hypothetical glycoside hydrolase, family 43, similar to arabinosidase
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Position: -349
Score: 6.4 Sequence: TCTCTACACTTAAAATTCGTTTATCCACCT
Position: -328
Score: 7.3 Sequence: TATCCACCTCTAAAACCCATTTGTCCACCC
Locus tag: BACEGG_01540
Name: susC_Ara-3 Funciton: TonB-dependent outer membrane transporter of arabinan oligosaccharides
Locus tag: BACEGG_01539
Name: susD_Ara-3 Funciton: Outer membrane polysaccharide binding protein for arabinan oligosaccharides
Locus tag: BACEGG_01538
Name: null Funciton: hypothetical protein
Locus tag: BACEGG_01537
Name: abn3 Funciton: Arabinan endo-1,5-alpha-L-arabinosidase |
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susC_Ara-3
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TonB-dependent outer membrane transporter of arabinan oligosaccharides
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susD_Ara-3
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Outer membrane polysaccharide binding protein for arabinan oligosaccharides
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hypothetical protein
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abn3
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Arabinan endo-1,5-alpha-L-arabinosidase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |