Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Clostridium perfringens ATCC 13124

Properties
Regulator type: Transcription factor
TF locus tag: CPF_2863
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbohydrate metabolism
Effector: HPr, phosphocarrier protein
Regulog: CcpA - Clostridia-1
Statistics of regulated genes:
- Genes 52
- Operons 28
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 436 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -47
Score: 4.1
Sequence: TTAAAAAAGTTTAGAA
Locus tag: CPF_0686
Name: CPF_0686
Funciton: Hypothetical protein
Locus tag: CPF_0687
Name: aroF
Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
Locus tag: CPF_0688
Name: aroB
Funciton: 3-dehydroquinate synthase (EC 4.2.3.4)
Locus tag: CPF_0689
Name: aroA
Funciton: 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Locus tag: CPF_0690
Name: aroC
Funciton: Chorismate synthase (EC 4.2.3.5)
CPF_0686
CPF_0686
Hypothetical protein
CPF_0687
aroF
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
CPF_0688
aroB
3-dehydroquinate synthase (EC 4.2.3.4)
CPF_0689
aroA
5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
CPF_0690
aroC
Chorismate synthase (EC 4.2.3.5)
Position: -95
Score: 4
Sequence: AATAAAAATATTTCTT
Position: -57
Score: 4.3
Sequence: ATGTAAATGTTTAACT
Locus tag: CPF_0733
Name: null
Funciton: Predicted sucrose transporter
Locus tag: CPF_0734
Name: scrK
Funciton: Fructokinase (EC 2.7.1.4)
CPF_0733
Predicted sucrose transporter
CPF_0734
scrK
Fructokinase (EC 2.7.1.4)
Position: -148
Score: 4.3
Sequence: ATTAAAAATATTTATT
Locus tag: CPF_1046
Name: fucO
Funciton: Lactaldehyde reductase (EC 1.1.1.77)
CPF_1046
fucO
Lactaldehyde reductase (EC 1.1.1.77)
Position: -128
Score: 4.8
Sequence: TTGAAAACGATTTTAA
Position: -91
Score: 4.1
Sequence: ATAAAAATGTATTAAA
Locus tag: CPF_0875
Name: nagJ
Funciton: O-N-acetylglucosaminidase (EC 3.2.1.169)
CPF_0875
nagJ
O-N-acetylglucosaminidase (EC 3.2.1.169)
Position: -31
Score: 4.4
Sequence: TAGTAAATGATTTTAT
Locus tag: CPF_0094
Name: gldA
Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
Locus tag: CPF_0095
Name: dak
Funciton: Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29) / FAD-AMP lyase (cyclizing) (EC 4.6.1.15)
CPF_0094
gldA
Glycerol dehydrogenase (EC 1.1.1.6)
CPF_0095
dak
Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29) / FAD-AMP lyase (cyclizing) (EC 4.6.1.15)
Position: -60
Score: 4
Sequence: TATTAAATGTTTATTA
Locus tag: CPF_1170
Name: glpF
Funciton: Glycerol uptake facilitator protein
CPF_1170
glpF
Glycerol uptake facilitator protein
Position: -19
Score: 4.2
Sequence: TTGTTAAATTTTTAAT
Locus tag: CPF_2879
Name: null
Funciton: hypothetical protein
Locus tag: CPF_2878
Name: glpF
Funciton: Glycerol uptake facilitator protein
Locus tag: CPF_2877
Name: glpP
Funciton: Glycerol uptake operon antiterminator regulatory protein
Locus tag: CPF_2876
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: CPF_2875
Name: glpA
Funciton: Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)
CPF_2879
hypothetical protein
CPF_2878
glpF
Glycerol uptake facilitator protein
CPF_2877
glpP
Glycerol uptake operon antiterminator regulatory protein
CPF_2876
glpK
Glycerol kinase (EC 2.7.1.30)
CPF_2875
glpA
Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)
Position: -202
Score: 4.1
Sequence: ATATAAAATTTTATAT
Locus tag: CPF_2616
Name: ispF
Funciton: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)
CPF_2616
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)
Position: -183
Score: 4.8
Sequence: TTGAAAATGTTTTCTT
Position: -128
Score: 4.5
Sequence: TTTAAAAAGATTTTAA
Locus tag: CPF_2652
Name: malE
Funciton: Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE
Locus tag: CPF_2651
Name: malF
Funciton: maltose transport system permease protein MalF
Locus tag: CPF_2650
Name: malG
Funciton: Maltose/maltodextrin ABC transporter, permease protein MalG
CPF_2652
malE
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE
CPF_2651
malF
maltose transport system permease protein MalF
CPF_2650
malG
Maltose/maltodextrin ABC transporter, permease protein MalG
Position: -131
Score: 4.7
Sequence: TTGTAAATGTTTAAAT
Locus tag: CPF_0851
Name: sdaR
Funciton: Sugar diacid utilization regulator SdaR
CPF_0851
sdaR
Sugar diacid utilization regulator SdaR
Position: -151
Score: 4.8
Sequence: AAGAAAACGTTTTAAA
Locus tag: CPF_1070
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIABC component (EC 2.7.1.69)
CPF_1070
nagE
PTS system, N-acetylglucosamine-specific IIABC component (EC 2.7.1.69)
Position: -116
Score: 4
Sequence: TAGATAACTTTTATAT
Locus tag: CPF_0071
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIBC component (EC 2.7.1.69)
CPF_0071
nagE
PTS system, N-acetylglucosamine-specific IIBC component (EC 2.7.1.69)
Position: -93
Score: 4.7
Sequence: AAGAAAACGTTTATAT
Locus tag: CPF_1048
Name: fucI
Funciton: L-fucose isomerase (EC 5.3.1.25)
Locus tag: CPF_1049
Name: fucK
Funciton: L-fuculokinase( EC:2.7.1.51 )
Locus tag: CPF_1050
Name: fucU
Funciton: L-fucose mutarotase (EC 5.1.3.n2)
Locus tag: CPF_1051
Name: fucA
Funciton: L-fuculose phosphate aldolase (EC 4.1.2.17)
Locus tag: CPF_1052
Name: fucP
Funciton: L-fucose:H+ symporter permease
CPF_1048
fucI
L-fucose isomerase (EC 5.3.1.25)
CPF_1049
fucK
L-fuculokinase( EC:2.7.1.51 )
CPF_1050
fucU
L-fucose mutarotase (EC 5.1.3.n2)
CPF_1051
fucA
L-fuculose phosphate aldolase (EC 4.1.2.17)
CPF_1052
fucP
L-fucose:H+ symporter permease
Position: -62
Score: 4.6
Sequence: ATGTAAATGTTTAATA
Locus tag: CPF_0765
Name: lacR
Funciton: Transcription regulator of lactose utilization, AraC family
CPF_0765
lacR
Transcription regulator of lactose utilization, AraC family
Position: -50
Score: 4.5
Sequence: TTGAAAATATTTATAT
Locus tag: CPF_1753
Name: null
Funciton: Putative N-acetylmuramoyl-L-alanine amidase
CPF_1753
Putative N-acetylmuramoyl-L-alanine amidase
Position: -214
Score: 4.2
Sequence: ATTTTAAAGTTTAATT
Locus tag: CPF_0541
Name: treB
Funciton: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
CPF_0541
treB
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Position: -112
Score: 4.4
Sequence: AAGAAAAAATTTTCTA
Locus tag: CPF_1512
Name: cggR
Funciton: Central glycolytic genes regulator
Locus tag: CPF_1511
Name: gapC
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: CPF_1510
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
CPF_1512
cggR
Central glycolytic genes regulator
CPF_1511
gapC
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
CPF_1510
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
Position: -48
Score: 4.6
Sequence: AAGAAAATGTTTACAA
Locus tag: CPF_0556
Name: null
Funciton: Predicted N-acetylglucosamine ABC transporter, substrate-binding protein
Locus tag: CPF_0557
Name: null
Funciton: Predicted N-acetylglucosamine ABC transporter, permease protein
Locus tag: CPF_0558
Name: null
Funciton: Predicted N-acetylglucosamine ABC transporter, permease protein
CPF_0556
Predicted N-acetylglucosamine ABC transporter, substrate-binding protein
CPF_0557
Predicted N-acetylglucosamine ABC transporter, permease protein
CPF_0558
Predicted N-acetylglucosamine ABC transporter, permease protein
Position: -148
Score: 4.6
Sequence: ATGAAAATGTTATCTT
Position: -76
Score: 4.1
Sequence: TTTAAAAAAATTATTA
Locus tag: CPF_1064
Name: null
Funciton: Predicted transporter with diguanylate phosphodiesterase EAL domain
CPF_1064
Predicted transporter with diguanylate phosphodiesterase EAL domain
Position: -114
Score: 4.6
Sequence: AAGAAAACGATTAATT
Position: -63
Score: 4.2
Sequence: TAGTAATCGTTTAAAA
Position: -48
Score: 4.2
Sequence: AAGAAAAAATTAACAA
Locus tag: CPF_1716
Name: CPF_1716
Funciton: PTS system, predicted N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
Locus tag: CPF_1715
Name: CPF_1715
Funciton: PTS system, predicted N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
Locus tag: CPF_1714
Name: null
Funciton: PTS system, predicted N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
CPF_1716
CPF_1716
PTS system, predicted N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
CPF_1715
CPF_1715
PTS system, predicted N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
CPF_1714
PTS system, predicted N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
Position: -235
Score: 4.5
Sequence: TTGAAAATTTTTTAAA
Locus tag: CPF_0818
Name: ptnA
Funciton: PTS system, mannose-specific IIBA component (EC 2.7.1.69)
Locus tag: CPF_0819
Name: manY
Funciton: PTS system, mannose-specific IIC component (EC 2.7.1.69)
Locus tag: CPF_0820
Name: ptnD
Funciton: PTS system, mannose-specific IID component (EC 2.7.1.69)
CPF_0818
ptnA
PTS system, mannose-specific IIBA component (EC 2.7.1.69)
CPF_0819
manY
PTS system, mannose-specific IIC component (EC 2.7.1.69)
CPF_0820
ptnD
PTS system, mannose-specific IID component (EC 2.7.1.69)
Position: -148
Score: 4.3
Sequence: ATATAAATGATTTATT
Locus tag: CPF_1681
Name: clpB
Funciton: ATP-dependent chaperone ClpB
CPF_1681
clpB
ATP-dependent chaperone ClpB
Position: -99
Score: 4.3
Sequence: TTTTAAAAGATTTATA
Position: -75
Score: 4.7
Sequence: TTGAAAATGTTATAAT
Locus tag: CPF_2251
Name: glsA
Funciton: Glutaminase (EC 3.5.1.2)
CPF_2251
glsA
Glutaminase (EC 3.5.1.2)
Position: -106
Score: 4.7
Sequence: TTGAAAACGTTATTAT
Locus tag: CPF_1087
Name: pulA
Funciton: Pullulanase (EC 3.2.1.41)
CPF_1087
pulA
Pullulanase (EC 3.2.1.41)
Position: -223
Score: 4.2
Sequence: TTAAAAATGTTAATAA
Position: -129
Score: 4.5
Sequence: TTGAAAACGTTTAGAT
Position: -28
Score: 4.5
Sequence: ATTAAAAAATTTTAAA
Locus tag: CPF_0244
Name: CPF_0244
Funciton: Predicted hydrolase
CPF_0244
CPF_0244
Predicted hydrolase
Position: -98
Score: 4.1
Sequence: AATTAAAAATTTAATT
Locus tag: CPF_1911
Name: null
Funciton: Hypothetical protein
CPF_1911
Hypothetical protein
Position: -152
Score: 4.6
Sequence: AAGAAAACGTTTTTTT
Position: -138
Score: 4.1
Sequence: TTGAAAAAAAATTAAA
Locus tag: CPF_2863
Name: ccpA
Funciton: Catabolite control protein A, LacI family
CPF_2863
ccpA
Catabolite control protein A, LacI family
Position: -232
Score: 4.1
Sequence: ATGATAAAGGTTACAT
Position: -128
Score: 4.2
Sequence: ATGTAAACTTTAAATA
Locus tag: CPF_0684
Name: tal
Funciton: Transaldolase (EC 2.2.1.2)
CPF_0684
tal
Transaldolase (EC 2.2.1.2)
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