Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Clostridium novyi NT

Properties
Regulator type: Transcription factor
TF locus tag: NT01CX_0643
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbohydrate metabolism
Effector: HPr, phosphocarrier protein
Regulog: CcpA - Clostridia-1
Statistics of regulated genes:
- Genes 32
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 436 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -56
Score: 4.1
Sequence: ATAATAAAGATTATAA
Position: -32
Score: 4
Sequence: ATTATAAAAATTAATT
Locus tag: NT01CX_1328
Name: yxkH
Funciton: Possible polysaccharide deacetylase
NT01CX_1328
yxkH
Possible polysaccharide deacetylase
Position: -194
Score: 4.4
Sequence: ATATAAATGATTTAAA
Position: -74
Score: 4.6
Sequence: ATGAAAAAGATAATAT
Locus tag: NT01CX_0485
Name: null
Funciton: Methyl-accepting chemotaxis protein
NT01CX_0485
Methyl-accepting chemotaxis protein
Position: -152
Score: 4.6
Sequence: ATAAAAAAGTTTTTAT
Locus tag: NT01CX_1049
Name: murD
Funciton: UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
NT01CX_1049
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
Position: -104
Score: 4.2
Sequence: ATACAAACGTTTTCAA
Locus tag: NT01CX_0609
Name: glpF
Funciton: Glycerol uptake facilitator protein
NT01CX_0609
glpF
Glycerol uptake facilitator protein
Position: -54
Score: 3.9
Sequence: ATGAAAAATAAATTAT
Locus tag: NT01CX_0608
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
NT01CX_0608
glpK
Glycerol kinase (EC 2.7.1.30)
Position: -107
Score: 4.2
Sequence: TATAAAAAGTTATATT
Locus tag: NT01CX_0606
Name: glpF
Funciton: Glycerol uptake facilitator protein
Locus tag: NT01CX_0605
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
NT01CX_0606
glpF
Glycerol uptake facilitator protein
NT01CX_0605
glpK
Glycerol kinase (EC 2.7.1.30)
Position: -33
Score: 4
Sequence: TATAAAAGGTTTTCAA
Locus tag: NT01CX_0689
Name: dhaK
Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Locus tag: NT01CX_0688
Name: dhaM
Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
Locus tag: NT01CX_0687
Name: dhaL
Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
NT01CX_0689
dhaK
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
NT01CX_0688
dhaM
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
NT01CX_0687
dhaL
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
Position: -128
Score: 4.1
Sequence: CTGTAAACGTTATTAT
Locus tag: NT01CX_0284
Name: aspC1
Funciton: Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)
NT01CX_0284
aspC1
Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)
Position: -111
Score: 4.1
Sequence: TTGATAACTTTTTTTA
Locus tag: NT01CX_1403
Name: cggR
Funciton: Central glycolytic genes regulator
Locus tag: NT01CX_1404
Name: gapC
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
NT01CX_1403
cggR
Central glycolytic genes regulator
NT01CX_1404
gapC
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -223
Score: 4.7
Sequence: ATTAAAAAGTTTTTAT
Locus tag: NT01CX_2122
Name: rny
Funciton: Ribonuclease Y
NT01CX_2122
rny
Ribonuclease Y
Position: -96
Score: 4.2
Sequence: ATTAAATTGTTTTTAT
Locus tag: NT01CX_2313
Name: mepA
Funciton: Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family
NT01CX_2313
mepA
Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family
Position: -124
Score: 4.1
Sequence: TTTTAAATGTTAATAA
Position: -32
Score: 4.2
Sequence: AAGTAAAAAATTAAAA
Locus tag: NT01CX_1609
Name: glcA
Funciton: L-lactate permease
NT01CX_1609
glcA
L-lactate permease
Position: -56
Score: 4.1
Sequence: AATAAAAATATTAAAT
Locus tag: NT01CX_1593
Name: null
Funciton: Hypothetical protein
NT01CX_1593
Hypothetical protein
Position: -131
Score: 4.2
Sequence: AAGAAAAATTTTATTT
Position: -30
Score: 4
Sequence: TTAAAAATTATATAAT
Locus tag: NT01CX_0749
Name: cca
Funciton: tRNA nucleotidyltransferase, CC-adding (EC 2.7.7.21)
Locus tag: NT01CX_0748
Name: tal
Funciton: Transaldolase (EC 2.2.1.2)
NT01CX_0749
cca
tRNA nucleotidyltransferase, CC-adding (EC 2.7.7.21)
NT01CX_0748
tal
Transaldolase (EC 2.2.1.2)
Position: -140
Score: 4.2
Sequence: AATAAAATATTTTATT
Locus tag: NT01CX_0754
Name: lrgA
Funciton: Antiholin-like protein LrgA
Locus tag: NT01CX_0755
Name: lrgB
Funciton: LrgA-associated membrane protein LrgB
NT01CX_0754
lrgA
Antiholin-like protein LrgA
NT01CX_0755
lrgB
LrgA-associated membrane protein LrgB
Position: -61
Score: 4.4
Sequence: TTTTAAATGTTTTATA
Locus tag: NT01CX_0643
Name: ccpA
Funciton: Catabolite control protein A, LacI family
NT01CX_0643
ccpA
Catabolite control protein A, LacI family
Position: -193
Score: 4.1
Sequence: TTGAAAAAGTGTACAA
Locus tag: NT01CX_1854
Name: nifJ2
Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
NT01CX_1854
nifJ2
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -156
Score: 4.2
Sequence: TTTAAAAAAATTTTTT
Locus tag: NT01CX_1380
Name: agaY
Funciton: Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
NT01CX_1380
agaY
Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
Position: -75
Score: 4.1
Sequence: ATAAAAATAATTTTTT
Locus tag: NT01CX_0292
Name: agaS
Funciton: Galactosamine-6-phosphate isomerase
Locus tag: NT01CX_0291
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: NT01CX_0290
Name: agaY
Funciton: Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
Locus tag: NT01CX_0289
Name: lacC
Funciton: Tagatose-6-phosphate kinase (EC 2.7.1.144)
Locus tag: NT01CX_0288
Name: galM
Funciton: Predicted galactose mutarotase
NT01CX_0292
agaS
Galactosamine-6-phosphate isomerase
NT01CX_0291
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
NT01CX_0290
agaY
Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
NT01CX_0289
lacC
Tagatose-6-phosphate kinase (EC 2.7.1.144)
NT01CX_0288
galM
Predicted galactose mutarotase
Position: -65
Score: 4.1
Sequence: TTGAAAATAAATTTAT
Locus tag: NT01CX_0100
Name: null
Funciton: Predicted glycogen synthase (EC 2.4.1.11)
Locus tag: NT01CX_0099
Name: mpg
Funciton: Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 ) / Phosphomannomutase (EC 5.4.2.8)
NT01CX_0100
Predicted glycogen synthase (EC 2.4.1.11)
NT01CX_0099
mpg
Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 ) / Phosphomannomutase (EC 5.4.2.8)
Position: 46
Score: 4
Sequence: TTGTTAAAGCTTTAAA
Locus tag: NT01CX_1623
Name: null
Funciton: Conserved hypothetical protein
NT01CX_1623
Conserved hypothetical protein
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise