Regulon of CcpA in Clostridium botulinum A str. ATCC 3502

Properties
Regulator type:	Transcription factor
TF locus tag:	CBO0100
Regulator family:	LacI
Regulation mode:	repressor (activator)
Biological process:	Carbohydrate metabolism
Effector:	HPr, phosphocarrier protein
Regulog:	CcpA - Clostridia-1
Statistics of regulated genes:
- Genes	51
- Operons	40
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 436 sites [see more]

Member of regulog collections

By trascription factor - CcpA
By taxonomy - Clostridia-1
By TF family - LacI
By effector - HPr, phosphocarrier protein
By pathway - Carbohydrate metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -161 Score: 4.7 Sequence: ATGTAAACATTTTAAT Locus tag: CBO0277 Name: glvC Funciton: PTS system, maltose-specific IIBC component (EC 2.7.1.69)
	CBO0277	glvC	PTS system, maltose-specific IIBC component (EC 2.7.1.69)
Position: -101 Score: 4.5 Sequence: ATTTAAAAGTTTAAAA Locus tag: CBO1472 Name: aroF Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) Locus tag: CBO1473 Name: aroA Funciton: 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
	CBO1472	aroF	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
	CBO1473	aroA	5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -207 Score: 4.3 Sequence: ATTTAAATAATTTAAT Locus tag: CBO2620 Name: niaX Funciton: Substrate-specific component NiaX of predicted niacin ECF transporter
	CBO2620	niaX	Substrate-specific component NiaX of predicted niacin ECF transporter
Position: -168 Score: 4.4 Sequence: ATGTAAATATTTTTTT Locus tag: CBO1873 Name: spoIVB Funciton: Stage IV sporulation protein B
	CBO1873	spoIVB	Stage IV sporulation protein B
Position: -76 Score: 4.6 Sequence: TTGAAAATATTTAAAT Position: -52 Score: 4.1 Sequence: ATAAAAAAATTAAAAA Locus tag: CBO0409 Name: clpB Funciton: ATP-dependent chaperone ClpB
	CBO0409	clpB	ATP-dependent chaperone ClpB
Position: -73 Score: 4.5 Sequence: TTTAAAATGTTTTATA Locus tag: CBO3516 Name: murD Funciton: UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
	CBO3516	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
Position: 58 Score: 4 Sequence: AAGAAATAATTATAAT Locus tag: CBO0654 Name: licT Funciton: Beta-glucoside bgl operon antiterminator, BglG family
	CBO0654	licT	Beta-glucoside bgl operon antiterminator, BglG family
Position: -33 Score: 4.2 Sequence: ATTAAAAAATTAATAT Locus tag: CBO2768 Name: glpP Funciton: Glycerol uptake operon antiterminator regulatory protein
	CBO2768	glpP	Glycerol uptake operon antiterminator regulatory protein
Position: -77 Score: 4.3 Sequence: TTTTAAAAGATTATTT Locus tag: CBO2784 Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
	CBO2784	glpK	Glycerol kinase (EC 2.7.1.30)
Position: -150 Score: 4.3 Sequence: TTGAAAACGTAAACAA Locus tag: CBO2785 Name: glpF Funciton: Glycerol uptake facilitator protein
	CBO2785	glpF	Glycerol uptake facilitator protein
Position: -70 Score: 3.9 Sequence: ATGTAAACGATATTAC Position: -36 Score: 3.9 Sequence: AATAAAAATATTTTTA Locus tag: CBO0976 Name: gldA Funciton: Glycerol dehydrogenase (EC 1.1.1.6) Locus tag: CBO0975 Name: dak Funciton: Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29) / FAD-AMP lyase (cyclizing) (EC 4.6.1.15)
	CBO0976	gldA	Glycerol dehydrogenase (EC 1.1.1.6)
	CBO0975	dak	Dihydroxyacetone kinase, ATP-dependent (EC 2.7.1.29) / FAD-AMP lyase (cyclizing) (EC 4.6.1.15)
Position: 0 Score: 4.4 Sequence: TTGAAAAATATTTTAA Locus tag: CBO2754 Name: gamP Funciton: PTS system, predicted glucoseamine-specific IICBA component
	CBO2754	gamP	PTS system, predicted glucoseamine-specific IICBA component
Position: -224 Score: 4.1 Sequence: ATATAAAAAATTATAT Position: -94 Score: 4.5 Sequence: ATGAAAAATATTTAAA Position: -50 Score: 4.1 Sequence: ATGTTAAAGATAATAA Locus tag: CBO1014 Name: aspC1 Funciton: Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)
	CBO1014	aspC1	Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)
Position: -32 Score: 4.1 Sequence: TATTAAATATTTAAAT Locus tag: CBO1816 Name: null Funciton: Predicted N-acetylglucosaminyltransferase (EC 2.4.1.-)
	CBO1816		Predicted N-acetylglucosaminyltransferase (EC 2.4.1.-)
Position: -219 Score: 4.1 Sequence: AAAAAAACATTTTATA Position: -145 Score: 4.1 Sequence: TTAAAAATGTATTTAT Position: -67 Score: 4.5 Sequence: ATGAAAATTTTTTATT Locus tag: CBO0529 Name: arcD Funciton: Putative arginine/ornithine antiporter
	CBO0529	arcD	Putative arginine/ornithine antiporter
Position: -189 Score: 4.2 Sequence: TAGTAAATTTTTAAAT Position: -104 Score: 4.5 Sequence: TTGAAAAAATTTTATA Locus tag: CBO3312 Name: pykA Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
	CBO3312	pykA	Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -85 Score: 4.5 Sequence: ATGAAATAGATTTAAT Locus tag: CBO3245 Name: yjiM Funciton: 2-hydroxyglutaryl-CoA dehydratase, beta subunit family protein Locus tag: CBO3244 Name: yjiM Funciton: 2-hydroxyglutaryl-CoA dehydratase, beta subunit family protein
	CBO3245	yjiM	2-hydroxyglutaryl-CoA dehydratase, beta subunit family protein
	CBO3244	yjiM	2-hydroxyglutaryl-CoA dehydratase, beta subunit family protein
Position: -208 Score: 4.3 Sequence: ATTAAAATGATAAATT Locus tag: CBO2885 Name: ygeW Funciton: Putative ornithine carbamoyltransferase (EC 2.1.3.3) Locus tag: CBO2884 Name: ygfK Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) Locus tag: CBO2883 Name: null Funciton: Putative deaminase Locus tag: CBO2882 Name: ygeY Funciton: Putative deacetylase
	CBO2885	ygeW	Putative ornithine carbamoyltransferase (EC 2.1.3.3)
	CBO2884	ygfK	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	CBO2883		Putative deaminase
	CBO2882	ygeY	Putative deacetylase
Position: -33 Score: 4.6 Sequence: ATGAAAAATTTTACAA Locus tag: CBO2472 Name: null Funciton: Glutamate/gamma-aminobutyrate antiporter
	CBO2472		Glutamate/gamma-aminobutyrate antiporter
Position: -108 Score: 4.5 Sequence: TTGAAAAAAATTTCAA Locus tag: CBO3139 Name: ytxC Funciton: Putative sporulation protein YtxC
	CBO3139	ytxC	Putative sporulation protein YtxC
Position: -49 Score: 4.6 Sequence: TTGAAAATAATTAAAT Locus tag: CBO2572 Name: null Funciton: Malate permease
	CBO2572		Malate permease
Position: -52 Score: 4.2 Sequence: ATGCAAACTTTTTTAT Locus tag: CBO2233 Name: ltaE Funciton: Low-specificity L-threonine aldolase (EC 4.1.2.5)
	CBO2233	ltaE	Low-specificity L-threonine aldolase (EC 4.1.2.5)
Position: -133 Score: 4.1 Sequence: TAGAAAATTTTTAATA Locus tag: CBO2288 Name: null Funciton: Metal-dependent hydrolase of the beta-lactamase superfamily II
	CBO2288		Metal-dependent hydrolase of the beta-lactamase superfamily II
Position: -125 Score: 4.5 Sequence: TTGAAAAATTTTAAAA Locus tag: CBO0225 Name: cggR Funciton: Central glycolytic genes regulator Locus tag: CBO0226 Name: gapC Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
	CBO0225	cggR	Central glycolytic genes regulator
	CBO0226	gapC	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -208 Score: 4.1 Sequence: ATGAAAAAATATATAA Locus tag: CBO2404 Name: rny Funciton: Ribonuclease Y
	CBO2404	rny	Ribonuclease Y
Position: -279 Score: 3.9 Sequence: TATCAAATGTTTTAAA Locus tag: CBO2845 Name: ptnD Funciton: PTS system, mannose-specific IID component (EC 2.7.1.69)
	CBO2845	ptnD	PTS system, mannose-specific IID component (EC 2.7.1.69)
Position: -219 Score: 4.3 Sequence: TAGAAAAAGATATTAA Position: -79 Score: 4.5 Sequence: TTGATAATGATTAAAT Locus tag: CBO0267 Name: pagL Funciton: Phospho-alpha-glucosidase (EC 3.2.1.122) Locus tag: CBO0268 Name: glcB Funciton: PTS system, maltose and glucose-specific IICBA component (EC 2.7.1.69)
	CBO0267	pagL	Phospho-alpha-glucosidase (EC 3.2.1.122)
	CBO0268	glcB	PTS system, maltose and glucose-specific IICBA component (EC 2.7.1.69)
Position: -232 Score: 4.1 Sequence: ATTAAAAAATTATTTT Position: -174 Score: 4.5 Sequence: TTGAAAAAAATTATAT Locus tag: CBO0270 Name: null Funciton: Transcription regulator, RpiR family Locus tag: CBO0269 Name: null Funciton: Transcription regulator, RpiR family
	CBO0270		Transcription regulator, RpiR family
	CBO0269		Transcription regulator, RpiR family
Position: -139 Score: 4.1 Sequence: TAGAAAAATTTATAAA Locus tag: CBO2780 Name: mepA Funciton: Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family
	CBO2780	mepA	Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family
Position: -83 Score: 4.1 Sequence: ATTTAAAAAATATAAA Locus tag: CBO0522 Name: null Funciton: Metal-dependent hydrolase of the beta-lactamase superfamily II
	CBO0522		Metal-dependent hydrolase of the beta-lactamase superfamily II
Position: -154 Score: 4.2 Sequence: AATTAAAAGATATAAT Position: -131 Score: 4 Sequence: AGGAAAAAAATATTAT Position: -87 Score: 4 Sequence: ATATAAATTATTAAAA Locus tag: CBO1090 Name: null Funciton: Hypothetical protein
	CBO1090		Hypothetical protein
Position: -219 Score: 4.1 Sequence: ATAAAAATTTTAAAAT Position: -175 Score: 4 Sequence: GAGAAAACGTTATAAA Locus tag: CBO1292 Name: tal Funciton: Transaldolase (EC 2.2.1.2)
	CBO1292	tal	Transaldolase (EC 2.2.1.2)
Position: -177 Score: 4.1 Sequence: ATAAAAAAAATTTTTA Position: -149 Score: 4.8 Sequence: TTGAAAACGTTATAAT Locus tag: CBO1005 Name: glcA Funciton: L-lactate permease Locus tag: CBO1006 Name: null Funciton: Predicted uronate isomerase
	CBO1005	glcA	L-lactate permease
	CBO1006		Predicted uronate isomerase
Position: -63 Score: 4.3 Sequence: ATGAAAAAGTAATAAA Locus tag: CBO0324 Name: lrgA Funciton: Antiholin-like protein LrgA Locus tag: CBO0325 Name: lrgB Funciton: LrgA-associated membrane protein LrgB
	CBO0324	lrgA	Antiholin-like protein LrgA
	CBO0325	lrgB	LrgA-associated membrane protein LrgB
Position: -122 Score: 4 Sequence: TAAAAAATGTTAAATT Locus tag: CBO0513 Name: null Funciton: Transcriptional regulator, GntR family
	CBO0513		Transcriptional regulator, GntR family
Position: -106 Score: 3.9 Sequence: CTGAAAATATTAATAT Locus tag: CBO1767 Name: CAC2689 Funciton: Hypothetical protein
	CBO1767	CAC2689	Hypothetical protein
Position: -191 Score: 4.3 Sequence: TTTAAAATGATTTTTA Locus tag: CBO2760 Name: nifJ2 Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	CBO2760	nifJ2	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -154 Score: 4 Sequence: TTAAAAAATATATAAA Locus tag: CBO0193 Name: agaY Funciton: Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
	CBO0193	agaY	Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
Position: -42 Score: 4.1 Sequence: ATGAAAATAAATACAA Locus tag: CBO0278 Name: glvA Funciton: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
	CBO0278	glvA	Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Position: -42 Score: 3.9 Sequence: AAAAAAATTATTTTAT Locus tag: CBO2085 Name: mutT1 Funciton: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
	CBO2085	mutT1	Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CcpA in Clostridium botulinum A str. ATCC 3502

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --