Regulon of NanR in Bacteroides coprophilus DSM 18228
| Regulator type: | Transcription factor |
| TF locus tag: | BACCOPRO_02516 |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization; N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine; N-acetylneuraminic acid |
| Regulog: | NanR - Bacteroidaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 2 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacteroidaceae
- By TF family - ROK
- By effector - N-acetylglucosamine
- By effector - N-acetylneuraminic acid
- By pathway - Sialic acid utilization
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -30
Score: 5.8 Sequence: TAAATAAATAATTTTATTAAATA
Locus tag: BACCOPRO_02518
Name: nanA Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
Locus tag: BACCOPRO_02519
Name: nanE-II Funciton: N-acetylmannosamine 2-epimerase
Locus tag: BACCOPRO_02520
Name: nanT-II Funciton: Predicted N-acetyl-neuraminate transporter, MFS family
Locus tag: BACCOPRO_02521
Name: PF04074 Funciton: Conserved hypothetical protein, PF04074 family
Locus tag: BACCOPRO_02522
Name: nanH Funciton: Sialidase (EC 3.2.1.18) |
|||
|
nanA
|
N-acetylneuraminate lyase (EC 4.1.3.3)
|
||
|
nanE-II
|
N-acetylmannosamine 2-epimerase
|
||
|
nanT-II
|
Predicted N-acetyl-neuraminate transporter, MFS family
|
||
|
PF04074
|
Conserved hypothetical protein, PF04074 family
|
||
|
nanH
|
Sialidase (EC 3.2.1.18)
|
||
|
Position: -43
Score: 5 Sequence: TTTATAAACTATTAATTAATTAA
Locus tag: BACCOPRO_02433
Name: exbB Funciton: Outer membrane transport system, transport protein ExbB
Locus tag: BACCOPRO_02432
Name: null Funciton: hypothetical protein
Locus tag: BACCOPRO_02431
Name: exbD Funciton: Outer membrane transport system, transport protein ExbD
Locus tag: BACCOPRO_02430
Name: exbD2 Funciton: Outer membrane transport system, transport protein ExbD |
|||
|
exbB
|
Outer membrane transport system, transport protein ExbB
|
||
|
hypothetical protein
|
|||
|
exbD
|
Outer membrane transport system, transport protein ExbD
|
||
|
exbD2
|
Outer membrane transport system, transport protein ExbD
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |