Regulon of CodY in Streptococcus gordonii str. Challis substr. CH1

Properties
Regulator type:	Transcription factor
TF locus tag:	SGO_0431
Regulator family:	CodY
Regulation mode:	repressor (activator)
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Regulog:	CodY - Streptococcaceae
Statistics of regulated genes:
- Genes	42
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 273 sites [see more]

Member of regulog collections

By taxonomy - Streptococcaceae
By TF family - CodY
By effector - Guanosine triphosphate
By effector - Branched-chain amino acids
By pathway - Amino acid metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -71 Score: 5.6 Sequence: AATTTTCAGATAATT Locus tag: SGO_0431 Name: codY Funciton: Nutrient limitation global transcriptional regulator CodY, CodY family Locus tag: SGO_0432 Name: pncA Funciton: Nicotinamidase (EC 3.5.1.19)
	SGO_0431	codY	Nutrient limitation global transcriptional regulator CodY, CodY family
	SGO_0432	pncA	Nicotinamidase (EC 3.5.1.19)
Position: -95 Score: 5.8 Sequence: AATTTTCAGAAAATT Locus tag: SGO_0276 Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
	SGO_0276	gdhA	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -99 Score: 5.8 Sequence: AATTTTCTGAAAATT Locus tag: SGO_1238 Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	SGO_1238	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -90 Score: 5.2 Sequence: AATATTCTGACAATT Locus tag: SGO_1712 Name: oppA2 Funciton: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1) Locus tag: SGO_1711 Name: oppB2 Funciton: Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1) Locus tag: SGO_1710 Name: oppC2 Funciton: Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1) Locus tag: SGO_1709 Name: oppD2 Funciton: Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1) Locus tag: SGO_1708 Name: oppF2 Funciton: Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
	SGO_1712	oppA2	Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
	SGO_1711	oppB2	Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
	SGO_1710	oppC2	Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
	SGO_1709	oppD2	Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
	SGO_1708	oppF2	Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
Position: -102 Score: 4.8 Sequence: TATTTTCCGAAAATT Position: -42 Score: 5.6 Sequence: AATTATCTGAAAATT Locus tag: SGO_1506 Name: SMU.1109 Funciton: Predicted Mn2+/Fe2+ transporter, NRAMP family
	SGO_1506	SMU.1109	Predicted Mn2+/Fe2+ transporter, NRAMP family
Position: -60 Score: 5.2 Sequence: AAATGTCAGAAAATT Locus tag: SGO_0226 Name: ubiE Funciton: SAM-dependent methyltransferase
	SGO_0226	ubiE	SAM-dependent methyltransferase
Position: -57 Score: 5.2 Sequence: AATTTTCTGATAAAT Locus tag: SGO_0139 Name: thrC Funciton: Threonine synthase (EC 4.2.3.1)
	SGO_0139	thrC	Threonine synthase (EC 4.2.3.1)
Position: -282 Score: 5.4 Sequence: AATTGTCTGAAAATT Locus tag: SGO_0565 Name: adhB1 Funciton: Alcohol dehydrogenase (EC 1.1.1.1)
	SGO_0565	adhB1	Alcohol dehydrogenase (EC 1.1.1.1)
Position: -249 Score: 5.8 Sequence: AATTTTCTGAAAATT Position: -27 Score: 5.1 Sequence: AATTTTTTGACAATT Locus tag: SGO_0526 Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: SGO_0527 Name: ilvN Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: SGO_0528 Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) Locus tag: SGO_0529 Name: ilvA Funciton: Threonine dehydratase (EC 4.3.1.19)
	SGO_0526	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)
	SGO_0527	ilvN	Acetolactate synthase small subunit (EC 2.2.1.6)
	SGO_0528	ilvC	Ketol-acid reductoisomerase (EC 1.1.1.86)
	SGO_0529	ilvA	Threonine dehydratase (EC 4.3.1.19)
Position: -222 Score: 5.4 Sequence: ATTTTTCTGAAAATT Locus tag: SGO_1927 Name: rpoB Funciton: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Locus tag: SGO_1926 Name: rpoC Funciton: DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
	SGO_1927	rpoB	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
	SGO_1926	rpoC	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
Position: -95 Score: 5.3 Sequence: AAAATTCTGAAAATT Locus tag: SGO_2064 Name: ilvD Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
	SGO_2064	ilvD	Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -29 Score: 5.5 Sequence: AATTTTTAGAAAATT Locus tag: SGO_1206 Name: asd Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Locus tag: SGO_1205 Name: dapA Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
	SGO_1206	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
	SGO_1205	dapA	Dihydrodipicolinate synthase (EC 4.2.1.52)
Position: -173 Score: 4.8 Sequence: AATTTTTAGAAACTT Locus tag: SGO_1625 Name: acuB Funciton: Acetoin utilization protein AcuB
	SGO_1625	acuB	Acetoin utilization protein AcuB
Position: 22 Score: 4.5 Sequence: AATTTCCAGAAAATG Locus tag: SGO_0342 Name: pepF Funciton: Oligoendopeptidase F
	SGO_0342	pepF	Oligoendopeptidase F
Position: -87 Score: 5.1 Sequence: TATATTCAGAAAATT Locus tag: SGO_0911 Name: yfjA Funciton: Conserved hypothetical protein
	SGO_0911	yfjA	Conserved hypothetical protein
Position: -83 Score: 5.2 Sequence: AATTATCTGACAATT Locus tag: SGO_1165 Name: efeO Funciton: Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain Locus tag: SGO_1164 Name: efeB Funciton: Ferrous iron transport peroxidase EfeB Locus tag: SGO_1163 Name: efeU Funciton: Ferrous iron transport permease EfeU Locus tag: SGO_1162 Name: tatC Funciton: Twin-arginine translocation protein TatC Locus tag: SGO_1161 Name: tatA Funciton: Twin-arginine translocation protein TatA
	SGO_1165	efeO	Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain
	SGO_1164	efeB	Ferrous iron transport peroxidase EfeB
	SGO_1163	efeU	Ferrous iron transport permease EfeU
	SGO_1162	tatC	Twin-arginine translocation protein TatC
	SGO_1161	tatA	Twin-arginine translocation protein TatA
Position: -55 Score: 5.4 Sequence: AATTTTCAGACAATT Locus tag: SGO_0566 Name: scpC Funciton: Serine endopeptidase ScpC (EC 3.4.21.-)
	SGO_0566	scpC	Serine endopeptidase ScpC (EC 3.4.21.-)
Position: -42 Score: 5.3 Sequence: AAAATTCAGAAAATT Locus tag: SGO_0476 Name: ymdE Funciton: Conserved hypothetical protein
	SGO_0476	ymdE	Conserved hypothetical protein
Position: -248 Score: 4.8 Sequence: TATTTTCAGAATAAT Locus tag: SGO_0985 Name: str1582 Funciton: Predicted amino acid ABC transporter, permease protein 1 Locus tag: SGO_0984 Name: str1581 Funciton: Predicted amino acid ABC transporter, permease protein 2 Locus tag: SGO_0983 Name: str1580 Funciton: Predicted amino acid ABC transporter, ATP-binding protein Locus tag: SGO_0982 Name: str1579 Funciton: Predicted amino acid ABC transporter, substrate-binding protein
	SGO_0985	str1582	Predicted amino acid ABC transporter, permease protein 1
	SGO_0984	str1581	Predicted amino acid ABC transporter, permease protein 2
	SGO_0983	str1580	Predicted amino acid ABC transporter, ATP-binding protein
	SGO_0982	str1579	Predicted amino acid ABC transporter, substrate-binding protein
Position: -66 Score: 5.6 Sequence: AATTTTCTGATAATT Locus tag: SGO_1630 Name: livK Funciton: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1) Locus tag: SGO_1629 Name: livH Funciton: Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1) Locus tag: SGO_1628 Name: livM Funciton: Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1) Locus tag: SGO_1627 Name: livG Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1) Locus tag: SGO_1626 Name: livF Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
	SGO_1630	livK	Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
	SGO_1629	livH	Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
	SGO_1628	livM	Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
	SGO_1627	livG	Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
	SGO_1626	livF	Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
Position: -38 Score: 4.5 Sequence: AATTGTTTGAATAAT Locus tag: SGO_1701 Name: thrA Funciton: Aspartokinase (EC 2.7.2.4)
	SGO_1701	thrA	Aspartokinase (EC 2.7.2.4)

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CodY in Streptococcus gordonii str. Challis substr. CH1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --