Regulon of CodY in Streptococcus gallolyticus UCN34
| Regulator type: | Transcription factor |
| TF locus tag: | GALLO_1876 |
| Regulator family: | CodY |
| Regulation mode: | repressor (activator) |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Regulog: | CodY - Streptococcaceae |
| Statistics of regulated genes: | |
| - Genes | 60 |
| - Operons | 28 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptococcaceae
- By TF family - CodY
- By effector - Guanosine triphosphate
- By effector - Branched-chain amino acids
- By pathway - Amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -77
Score: 5.6 Sequence: AATTTTCAGATAATT
Locus tag: GALLO_1876
Name: codY Funciton: Nutrient limitation global transcriptional regulator CodY, CodY family
Locus tag: GALLO_1875
Name: pncA Funciton: Nicotinamidase (EC 3.5.1.19) |
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codY
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Nutrient limitation global transcriptional regulator CodY, CodY family
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pncA
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Nicotinamidase (EC 3.5.1.19)
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Position: -266
Score: 5 Sequence: AGTATTCAGAAAATT
Locus tag: GALLO_0758
Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13)
Locus tag: GALLO_0759
Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
Locus tag: GALLO_0760
Name: ygaE Funciton: Predicted transmembrane protein
Locus tag: GALLO_0761
Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Locus tag: GALLO_0762
Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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leuA
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2-isopropylmalate synthase (EC 2.3.3.13)
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leuB
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3-isopropylmalate dehydrogenase (EC 1.1.1.85)
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ygaE
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Predicted transmembrane protein
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leuC
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3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
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leuD
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3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
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Position: -45
Score: 5.3 Sequence: AATTATCTGAATATT
Locus tag: GALLO_1124
Name: SMU.1109 Funciton: Predicted Mn2+/Fe2+ transporter, NRAMP family |
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SMU.1109
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Predicted Mn2+/Fe2+ transporter, NRAMP family
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Position: -87
Score: 5.3 Sequence: AATTTTCTGAATTTT
Locus tag: GALLO_0746
Name: gapN Funciton: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) |
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gapN
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Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
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Position: -215
Score: 4.6 Sequence: AAAAGTCAGAAAAAT
Locus tag: GALLO_0324
Name: oppA1 Funciton: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
Locus tag: GALLO_0325
Name: oppB1 Funciton: Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
Locus tag: GALLO_0326
Name: oppC1 Funciton: Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
Locus tag: GALLO_0327
Name: oppD1 Funciton: Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
Locus tag: GALLO_0328
Name: oppF1 Funciton: Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1) |
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oppA1
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Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
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oppB1
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Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
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oppC1
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Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
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oppD1
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Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
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oppF1
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Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
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Position: -51
Score: 5.3 Sequence: AAAATTCAGAAAATT
Locus tag: GALLO_1746
Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: GALLO_1745
Name: yesJ Funciton: Acetyltransferase (EC 2.3.1.-), GNAT family
Locus tag: GALLO_1744
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) |
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serC
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Phosphoserine aminotransferase (EC 2.6.1.52)
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yesJ
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Acetyltransferase (EC 2.3.1.-), GNAT family
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serA
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D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
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Position: -59
Score: 5 Sequence: AATATTCTGAATAAT
Locus tag: GALLO_1991
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: GALLO_1990
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -78
Score: 5.8 Sequence: AATTTTCAGAAAATT
Locus tag: GALLO_1293
Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
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gdhA
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NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
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Position: -84
Score: 5.3 Sequence: AATTTTCAGAATTTT
Locus tag: GALLO_0979
Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42) |
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ilvE
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Branched-chain amino acid aminotransferase (EC 2.6.1.42)
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Position: -148
Score: 5 Sequence: AAAATTTAGAAAATT
Locus tag: GALLO_1749
Name: nrgA Funciton: Ammonium transporter
Locus tag: GALLO_1748
Name: nrgB Funciton: Nitrogen regulatory protein P-II |
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nrgA
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Ammonium transporter
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nrgB
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Nitrogen regulatory protein P-II
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Position: -61
Score: 5.6 Sequence: AATTTTCTGATAATT
Locus tag: GALLO_0042
Name: thrC Funciton: Threonine synthase (EC 4.2.3.1) |
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thrC
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Threonine synthase (EC 4.2.3.1)
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Position: -42
Score: 5.2 Sequence: AATTTTTAGATAATT
Locus tag: GALLO_0305
Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
Locus tag: GALLO_0306
Name: ilvN Funciton: Acetolactate synthase small subunit (EC 2.2.1.6)
Locus tag: GALLO_0307
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Locus tag: GALLO_0308
Name: ilvA Funciton: Threonine dehydratase (EC 4.3.1.19) |
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ilvB
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Acetolactate synthase large subunit (EC 2.2.1.6)
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ilvN
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Acetolactate synthase small subunit (EC 2.2.1.6)
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ilvC
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Ketol-acid reductoisomerase (EC 1.1.1.86)
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ilvA
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Threonine dehydratase (EC 4.3.1.19)
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Position: -109
Score: 5.8 Sequence: AATTTTCAGAAAATT
Locus tag: GALLO_0871
Name: fatD Funciton: Iron-siderophore ABC transporter, permease protein 1
Locus tag: GALLO_0872
Name: fatC Funciton: Iron-siderophore ABC transporter, permease protein 2
Locus tag: GALLO_0873
Name: fatA Funciton: Iron-siderophore ABC transporter, ATP-binding protein
Locus tag: GALLO_0874
Name: fatB Funciton: Iron-siderophore ABC transporter, substrate-binding protein |
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fatD
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Iron-siderophore ABC transporter, permease protein 1
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fatC
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Iron-siderophore ABC transporter, permease protein 2
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fatA
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Iron-siderophore ABC transporter, ATP-binding protein
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fatB
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Iron-siderophore ABC transporter, substrate-binding protein
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Position: -125
Score: 4.7 Sequence: AAATGTCAGAATTTT
Locus tag: GALLO_0478
Name: pepC Funciton: Aminopeptidase C (EC 3.4.22.40) |
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pepC
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Aminopeptidase C (EC 3.4.22.40)
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Position: -206
Score: 4.6 Sequence: AATATTTTTAAAATT
Locus tag: GALLO_0890
Name: SMU.63c Funciton: Conserved hypothetical secreted protein |
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SMU.63c
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Conserved hypothetical secreted protein
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Position: -118
Score: 4.8 Sequence: ATTTTTCTGTAAATT
Locus tag: GALLO_1241
Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: GALLO_1240
Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39) |
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hom
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Homoserine dehydrogenase (EC 1.1.1.3)
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thrB
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Homoserine kinase (EC 2.7.1.39)
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Position: -100
Score: 5 Sequence: AATTTTCAGAAAAAA
Locus tag: GALLO_0748
Name: scpC Funciton: Serine endopeptidase ScpC (EC 3.4.21.-) |
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scpC
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Serine endopeptidase ScpC (EC 3.4.21.-)
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Position: -220
Score: 5.1 Sequence: AATTTTCTGATTTTT
Locus tag: GALLO_1516
Name: pepF Funciton: Oligoendopeptidase F |
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pepF
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Oligoendopeptidase F
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Position: -114
Score: 5.1 Sequence: AATTTTCTGAATATA
Locus tag: GALLO_1555
Name: gluQ Funciton: Glutamate ABC transporter, ATP-binding protein
Locus tag: GALLO_1556
Name: gluH Funciton: Glutamate ABC transporter, substrate-binding protein
Locus tag: GALLO_1557
Name: gluM Funciton: Glutamate ABC transporter, permease protein 1
Locus tag: GALLO_1558
Name: gluP Funciton: Glutamate ABC transporter, permease protein 2 |
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gluQ
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Glutamate ABC transporter, ATP-binding protein
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gluH
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Glutamate ABC transporter, substrate-binding protein
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gluM
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Glutamate ABC transporter, permease protein 1
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gluP
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Glutamate ABC transporter, permease protein 2
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Position: -132
Score: 5.1 Sequence: AAAAATCAGAAAATT
Locus tag: GALLO_1515
Name: ppc Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
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ppc
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Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
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Position: -38
Score: 4.7 Sequence: AATTTTCAGACTATA
Locus tag: GALLO_1993
Name: glnR Funciton: Nitrogen metabolism transcriptional regulator GlnR, MerR family
Locus tag: GALLO_1992
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnR
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Nitrogen metabolism transcriptional regulator GlnR, MerR family
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -153
Score: 4.7 Sequence: TATTTTCTGACTATT
Locus tag: GALLO_0638
Name: dtpT Funciton: Di- and tripeptide permease DtpT |
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dtpT
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Di- and tripeptide permease DtpT
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Position: -52
Score: 5.3 Sequence: AATTTTCAGAATTTT
Locus tag: GALLO_0331
Name: thrA Funciton: Aspartokinase (EC 2.7.2.4) |
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thrA
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Aspartokinase (EC 2.7.2.4)
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Position: -144
Score: 4.8 Sequence: AATTTTCAAAAAAGT
Locus tag: GALLO_0534
Name: asnA Funciton: Aspartate--ammonia ligase (EC 6.3.1.1) |
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asnA
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Aspartate--ammonia ligase (EC 6.3.1.1)
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Position: -56
Score: 4.6 Sequence: AATTTTCAGTTATTT
Locus tag: GALLO_1433
Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Locus tag: GALLO_1432
Name: aroK Funciton: Shikimate kinase I (EC 2.7.1.71)
Locus tag: GALLO_1431
Name: pheA Funciton: Prephenate dehydratase (EC 4.2.1.51) |
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aroA
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5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
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aroK
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Shikimate kinase I (EC 2.7.1.71)
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pheA
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Prephenate dehydratase (EC 4.2.1.51)
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Position: -66
Score: 5.6 Sequence: AATTTTCTGATAATT
Locus tag: GALLO_1760
Name: livK Funciton: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
Locus tag: GALLO_1759
Name: livH Funciton: Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
Locus tag: GALLO_1758
Name: livM Funciton: Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
Locus tag: GALLO_1757
Name: livG Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
Locus tag: GALLO_1756
Name: livF Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1) |
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livK
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Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
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livH
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Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
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livM
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Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
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livG
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Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
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livF
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Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
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Position: -52
Score: 5.1 Sequence: ATTTTTTAGAAAATT
Locus tag: GALLO_1113
Name: asd Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Locus tag: GALLO_1112
Name: dapA Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52) |
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asd
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Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
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dapA
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Dihydrodipicolinate synthase (EC 4.2.1.52)
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Position: -165
Score: 4.6 Sequence: AAGATTCTAAAAATT
Locus tag: GALLO_0084
Name: rpoB Funciton: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
Locus tag: GALLO_0085
Name: rpoC Funciton: DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) |
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rpoB
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DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
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rpoC
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DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |