Regulon of CodY in Streptococcus gallolyticus UCN34

Properties
Regulator type:	Transcription factor
TF locus tag:	GALLO_1876
Regulator family:	CodY
Regulation mode:	repressor (activator)
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Regulog:	CodY - Streptococcaceae
Statistics of regulated genes:
- Genes	60
- Operons	28
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 273 sites [see more]

Member of regulog collections

By taxonomy - Streptococcaceae
By TF family - CodY
By effector - Guanosine triphosphate
By effector - Branched-chain amino acids
By pathway - Amino acid metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -77 Score: 5.6 Sequence: AATTTTCAGATAATT Locus tag: GALLO_1876 Name: codY Funciton: Nutrient limitation global transcriptional regulator CodY, CodY family Locus tag: GALLO_1875 Name: pncA Funciton: Nicotinamidase (EC 3.5.1.19)
	GALLO_1876	codY	Nutrient limitation global transcriptional regulator CodY, CodY family
	GALLO_1875	pncA	Nicotinamidase (EC 3.5.1.19)
Position: -266 Score: 5 Sequence: AGTATTCAGAAAATT Locus tag: GALLO_0758 Name: leuA Funciton: 2-isopropylmalate synthase (EC 2.3.3.13) Locus tag: GALLO_0759 Name: leuB Funciton: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) Locus tag: GALLO_0760 Name: ygaE Funciton: Predicted transmembrane protein Locus tag: GALLO_0761 Name: leuC Funciton: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) Locus tag: GALLO_0762 Name: leuD Funciton: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
	GALLO_0758	leuA	2-isopropylmalate synthase (EC 2.3.3.13)
	GALLO_0759	leuB	3-isopropylmalate dehydrogenase (EC 1.1.1.85)
	GALLO_0760	ygaE	Predicted transmembrane protein
	GALLO_0761	leuC	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
	GALLO_0762	leuD	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Position: -45 Score: 5.3 Sequence: AATTATCTGAATATT Locus tag: GALLO_1124 Name: SMU.1109 Funciton: Predicted Mn2+/Fe2+ transporter, NRAMP family
	GALLO_1124	SMU.1109	Predicted Mn2+/Fe2+ transporter, NRAMP family
Position: -87 Score: 5.3 Sequence: AATTTTCTGAATTTT Locus tag: GALLO_0746 Name: gapN Funciton: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
	GALLO_0746	gapN	Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
Position: -215 Score: 4.6 Sequence: AAAAGTCAGAAAAAT Locus tag: GALLO_0324 Name: oppA1 Funciton: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1) Locus tag: GALLO_0325 Name: oppB1 Funciton: Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1) Locus tag: GALLO_0326 Name: oppC1 Funciton: Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1) Locus tag: GALLO_0327 Name: oppD1 Funciton: Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1) Locus tag: GALLO_0328 Name: oppF1 Funciton: Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
	GALLO_0324	oppA1	Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
	GALLO_0325	oppB1	Oligopeptide ABC transporter, permease protein 1 (TC 3.A.1.5.1)
	GALLO_0326	oppC1	Oligopeptide ABC transporter, permease protein 2 (TC 3.A.1.5.1)
	GALLO_0327	oppD1	Oligopeptide ABC transporter, ATP-binding protein 1 (TC 3.A.1.5.1)
	GALLO_0328	oppF1	Oligopeptide ABC transporter, ATP-binding protein 2 (TC 3.A.1.5.1)
Position: -51 Score: 5.3 Sequence: AAAATTCAGAAAATT Locus tag: GALLO_1746 Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52) Locus tag: GALLO_1745 Name: yesJ Funciton: Acetyltransferase (EC 2.3.1.-), GNAT family Locus tag: GALLO_1744 Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
	GALLO_1746	serC	Phosphoserine aminotransferase (EC 2.6.1.52)
	GALLO_1745	yesJ	Acetyltransferase (EC 2.3.1.-), GNAT family
	GALLO_1744	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Position: -59 Score: 5 Sequence: AATATTCTGAATAAT Locus tag: GALLO_1991 Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) Locus tag: GALLO_1990 Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
	GALLO_1991	gltB	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
	GALLO_1990	gltD	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -78 Score: 5.8 Sequence: AATTTTCAGAAAATT Locus tag: GALLO_1293 Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
	GALLO_1293	gdhA	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -84 Score: 5.3 Sequence: AATTTTCAGAATTTT Locus tag: GALLO_0979 Name: ilvE Funciton: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
	GALLO_0979	ilvE	Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Position: -148 Score: 5 Sequence: AAAATTTAGAAAATT Locus tag: GALLO_1749 Name: nrgA Funciton: Ammonium transporter Locus tag: GALLO_1748 Name: nrgB Funciton: Nitrogen regulatory protein P-II
	GALLO_1749	nrgA	Ammonium transporter
	GALLO_1748	nrgB	Nitrogen regulatory protein P-II
Position: -61 Score: 5.6 Sequence: AATTTTCTGATAATT Locus tag: GALLO_0042 Name: thrC Funciton: Threonine synthase (EC 4.2.3.1)
	GALLO_0042	thrC	Threonine synthase (EC 4.2.3.1)
Position: -42 Score: 5.2 Sequence: AATTTTTAGATAATT Locus tag: GALLO_0305 Name: ilvB Funciton: Acetolactate synthase large subunit (EC 2.2.1.6) Locus tag: GALLO_0306 Name: ilvN Funciton: Acetolactate synthase small subunit (EC 2.2.1.6) Locus tag: GALLO_0307 Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) Locus tag: GALLO_0308 Name: ilvA Funciton: Threonine dehydratase (EC 4.3.1.19)
	GALLO_0305	ilvB	Acetolactate synthase large subunit (EC 2.2.1.6)
	GALLO_0306	ilvN	Acetolactate synthase small subunit (EC 2.2.1.6)
	GALLO_0307	ilvC	Ketol-acid reductoisomerase (EC 1.1.1.86)
	GALLO_0308	ilvA	Threonine dehydratase (EC 4.3.1.19)
Position: -109 Score: 5.8 Sequence: AATTTTCAGAAAATT Locus tag: GALLO_0871 Name: fatD Funciton: Iron-siderophore ABC transporter, permease protein 1 Locus tag: GALLO_0872 Name: fatC Funciton: Iron-siderophore ABC transporter, permease protein 2 Locus tag: GALLO_0873 Name: fatA Funciton: Iron-siderophore ABC transporter, ATP-binding protein Locus tag: GALLO_0874 Name: fatB Funciton: Iron-siderophore ABC transporter, substrate-binding protein
	GALLO_0871	fatD	Iron-siderophore ABC transporter, permease protein 1
	GALLO_0872	fatC	Iron-siderophore ABC transporter, permease protein 2
	GALLO_0873	fatA	Iron-siderophore ABC transporter, ATP-binding protein
	GALLO_0874	fatB	Iron-siderophore ABC transporter, substrate-binding protein
Position: -125 Score: 4.7 Sequence: AAATGTCAGAATTTT Locus tag: GALLO_0478 Name: pepC Funciton: Aminopeptidase C (EC 3.4.22.40)
	GALLO_0478	pepC	Aminopeptidase C (EC 3.4.22.40)
Position: -206 Score: 4.6 Sequence: AATATTTTTAAAATT Locus tag: GALLO_0890 Name: SMU.63c Funciton: Conserved hypothetical secreted protein
	GALLO_0890	SMU.63c	Conserved hypothetical secreted protein
Position: -118 Score: 4.8 Sequence: ATTTTTCTGTAAATT Locus tag: GALLO_1241 Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3) Locus tag: GALLO_1240 Name: thrB Funciton: Homoserine kinase (EC 2.7.1.39)
	GALLO_1241	hom	Homoserine dehydrogenase (EC 1.1.1.3)
	GALLO_1240	thrB	Homoserine kinase (EC 2.7.1.39)
Position: -100 Score: 5 Sequence: AATTTTCAGAAAAAA Locus tag: GALLO_0748 Name: scpC Funciton: Serine endopeptidase ScpC (EC 3.4.21.-)
	GALLO_0748	scpC	Serine endopeptidase ScpC (EC 3.4.21.-)
Position: -220 Score: 5.1 Sequence: AATTTTCTGATTTTT Locus tag: GALLO_1516 Name: pepF Funciton: Oligoendopeptidase F
	GALLO_1516	pepF	Oligoendopeptidase F
Position: -114 Score: 5.1 Sequence: AATTTTCTGAATATA Locus tag: GALLO_1555 Name: gluQ Funciton: Glutamate ABC transporter, ATP-binding protein Locus tag: GALLO_1556 Name: gluH Funciton: Glutamate ABC transporter, substrate-binding protein Locus tag: GALLO_1557 Name: gluM Funciton: Glutamate ABC transporter, permease protein 1 Locus tag: GALLO_1558 Name: gluP Funciton: Glutamate ABC transporter, permease protein 2
	GALLO_1555	gluQ	Glutamate ABC transporter, ATP-binding protein
	GALLO_1556	gluH	Glutamate ABC transporter, substrate-binding protein
	GALLO_1557	gluM	Glutamate ABC transporter, permease protein 1
	GALLO_1558	gluP	Glutamate ABC transporter, permease protein 2
Position: -132 Score: 5.1 Sequence: AAAAATCAGAAAATT Locus tag: GALLO_1515 Name: ppc Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
	GALLO_1515	ppc	Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -38 Score: 4.7 Sequence: AATTTTCAGACTATA Locus tag: GALLO_1993 Name: glnR Funciton: Nitrogen metabolism transcriptional regulator GlnR, MerR family Locus tag: GALLO_1992 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
	GALLO_1993	glnR	Nitrogen metabolism transcriptional regulator GlnR, MerR family
	GALLO_1992	glnA	Glutamine synthetase type I (EC 6.3.1.2)
Position: -153 Score: 4.7 Sequence: TATTTTCTGACTATT Locus tag: GALLO_0638 Name: dtpT Funciton: Di- and tripeptide permease DtpT
	GALLO_0638	dtpT	Di- and tripeptide permease DtpT
Position: -52 Score: 5.3 Sequence: AATTTTCAGAATTTT Locus tag: GALLO_0331 Name: thrA Funciton: Aspartokinase (EC 2.7.2.4)
	GALLO_0331	thrA	Aspartokinase (EC 2.7.2.4)
Position: -144 Score: 4.8 Sequence: AATTTTCAAAAAAGT Locus tag: GALLO_0534 Name: asnA Funciton: Aspartate--ammonia ligase (EC 6.3.1.1)
	GALLO_0534	asnA	Aspartate--ammonia ligase (EC 6.3.1.1)
Position: -56 Score: 4.6 Sequence: AATTTTCAGTTATTT Locus tag: GALLO_1433 Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) Locus tag: GALLO_1432 Name: aroK Funciton: Shikimate kinase I (EC 2.7.1.71) Locus tag: GALLO_1431 Name: pheA Funciton: Prephenate dehydratase (EC 4.2.1.51)
	GALLO_1433	aroA	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
	GALLO_1432	aroK	Shikimate kinase I (EC 2.7.1.71)
	GALLO_1431	pheA	Prephenate dehydratase (EC 4.2.1.51)
Position: -66 Score: 5.6 Sequence: AATTTTCTGATAATT Locus tag: GALLO_1760 Name: livK Funciton: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1) Locus tag: GALLO_1759 Name: livH Funciton: Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1) Locus tag: GALLO_1758 Name: livM Funciton: Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1) Locus tag: GALLO_1757 Name: livG Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1) Locus tag: GALLO_1756 Name: livF Funciton: Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
	GALLO_1760	livK	Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
	GALLO_1759	livH	Branched-chain amino acids ABC transporter, permease protein 1 (TC 3.A.1.4.1)
	GALLO_1758	livM	Branched-chain amino acids ABC transporter, permease protein 2 (TC 3.A.1.4.1)
	GALLO_1757	livG	Branched-chain amino acids ABC transporter, ATP-binding protein 1 (TC 3.A.1.4.1)
	GALLO_1756	livF	Branched-chain amino acids ABC transporter, ATP-binding protein 2 (TC 3.A.1.4.1)
Position: -52 Score: 5.1 Sequence: ATTTTTTAGAAAATT Locus tag: GALLO_1113 Name: asd Funciton: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Locus tag: GALLO_1112 Name: dapA Funciton: Dihydrodipicolinate synthase (EC 4.2.1.52)
	GALLO_1113	asd	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
	GALLO_1112	dapA	Dihydrodipicolinate synthase (EC 4.2.1.52)
Position: -165 Score: 4.6 Sequence: AAGATTCTAAAAATT Locus tag: GALLO_0084 Name: rpoB Funciton: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) Locus tag: GALLO_0085 Name: rpoC Funciton: DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)
	GALLO_0084	rpoB	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
	GALLO_0085	rpoC	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of CodY in Streptococcus gallolyticus UCN34

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --