Regulon of MetJ in Shewanella woodyi ATCC 51908

Properties
Regulator type:	Transcription factor
TF locus tag:	Swoo_0621
Regulator family:	MetJ
Regulation mode:	repressor
Biological process:	Methionine biosynthesis; Methionine metabolism
Effector:	S-adenosylmethionine
Regulog:	MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes	13
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 397 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - MetJ
By TF family - MetJ
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis
By pathway - Methionine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -191 Score: 5.6 Sequence: AGAAGTAA-(0)-AAACATCT Position: -183 Score: 7.1 Sequence: AAACATCT-(0)-AGACGTCT Locus tag: Swoo_3871 Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family
	Swoo_3871	metT	Methionine transporter MetT, NhaC antiporter family
Position: -124 Score: 7 Sequence: GGACGTCT-(0)-AAACGTCT Position: -72 Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT Locus tag: Swoo_0622 Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: Swoo_0623 Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
	Swoo_0622	metB	Cystathionine gamma-synthase (EC 2.5.1.48)
	Swoo_0623	metL	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -50 Score: 6.2 Sequence: GGACATAT-(0)-AGACATCC Position: -42 Score: 6.7 Sequence: AGACATCC-(0)-AGAAGTCT Position: -34 Score: 5.6 Sequence: AGAAGTCT-(0)-TGATGTAT Locus tag: Swoo_3205 Name: COG3126 Funciton: Lipoprotein-related protein Locus tag: Swoo_3204 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	Swoo_3205	COG3126	Lipoprotein-related protein
	Swoo_3204	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -145 Score: 5.9 Sequence: AGCCGTCT-(0)-AGATGTAA Position: -137 Score: 5.2 Sequence: AGATGTAA-(0)-ATACTTCT Locus tag: Swoo_0875 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	Swoo_0875	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -95 Score: 5.1 Sequence: AAACATCC-(0)-AAATGGTT Position: -61 Score: 6.2 Sequence: AGACATCT-(0)-AGATGGCC Locus tag: Swoo_3427 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	Swoo_3427	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -108 Score: 6.3 Sequence: GGGCGTCT-(0)-GGACGTCT Position: -100 Score: 6.6 Sequence: GGACGTCT-(0)-AGATGTAT Locus tag: Swoo_3732 Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
	Swoo_3732	metR	Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Position: -163 Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT Position: -155 Score: 5.8 Sequence: ATACGTAT-(0)-AAACATCC Locus tag: Swoo_4088 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	Swoo_4088	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -92 Score: 6.3 Sequence: GGATGTAT-(0)-AGACGTCC Position: -84 Score: 7.1 Sequence: AGACGTCC-(0)-AAACGTCT Locus tag: Swoo_0624 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
	Swoo_0624	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -176 Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT Position: -168 Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC Position: -124 Score: 7 Sequence: AGACGTTT-(0)-AGACGTCC Position: -116 Score: 6.1 Sequence: AGACGTCC-(0)-GAACATAT Locus tag: Swoo_0621 Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
	Swoo_0621	metJ	S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -73 Score: 6.2 Sequence: AGACATCC-(0)-GGACGGCT Position: -65 Score: 5.5 Sequence: GGACGGCT-(0)-AAACGGCC Locus tag: Swoo_2276 Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
	Swoo_2276	msrA	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -61 Score: 5.4 Sequence: AGCCGTTT-(0)-AGATGTTA Position: -53 Score: 5.3 Sequence: AGATGTTA-(0)-AGATGGCT Locus tag: Swoo_2120 Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
	Swoo_2120	metC	Cystathionine beta-lyase (EC 4.4.1.8)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of MetJ in Shewanella woodyi ATCC 51908

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --