Regulon of MetJ in Shewanella oneidensis MR-1
| Regulator type: | Transcription factor |
| TF locus tag: | SO4057 |
| Regulator family: | MetJ |
| Regulation mode: | repressor |
| Biological process: | Methionine biosynthesis; Methionine metabolism |
| Effector: | S-adenosylmethionine |
| Regulog: | MetJ - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - MetJ
- By TF family - MetJ
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
- By pathway - Methionine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -100
Score: 6.4 Sequence: GGACATAT-(0)-AGACGTCC
Position: -92
Score: 6.8 Sequence: AGACGTCC-(0)-AAACGTCC
Locus tag: SO4054
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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metF
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
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Position: -97
Score: 6.7 Sequence: AGACATCC-(0)-AGAAGTCT
Locus tag: SO1675
Name: COG3126 Funciton: Lipoprotein-related protein
Locus tag: SO1676
Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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COG3126
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Lipoprotein-related protein
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metA
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Homoserine O-succinyltransferase (EC 2.3.1.46)
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Position: -93
Score: 7.3 Sequence: AGACGTCT-(0)-AAACGTCT
Position: -38
Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT
Locus tag: SO4056
Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: SO4055
Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
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metB
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Cystathionine gamma-synthase (EC 2.5.1.48)
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metL
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Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
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Position: -119
Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT
Position: -111
Score: 5.7 Sequence: ATACGTAT-(0)-AAATGTCC
Locus tag: SO1030
Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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metH
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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Position: -126
Score: 6.6 Sequence: AAACTTCT-(0)-AGACGTCC
Position: -118
Score: 6.5 Sequence: AGACGTCC-(0)-AGACGCCC
Locus tag: SO0818
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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metE
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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Position: -59
Score: 5.8 Sequence: AGCCGTCT-(0)-AGATGTAG
Locus tag: SO0929
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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metK
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S-adenosylmethionine synthetase (EC 2.5.1.6)
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Position: -215
Score: 5.2 Sequence: AGCCATCA-(0)-AAACTTAT
Position: -132
Score: 5.7 Sequence: AGACTTCC-(0)-AGATGGCC
Locus tag: SO1095
Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
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metY
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O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
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Position: -97
Score: 6.3 Sequence: GGGCGTCT-(0)-GGACGTCT
Position: -89
Score: 6.4 Sequence: GGACGTCT-(0)-AGAAGTTT
Locus tag: SO0817
Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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metR
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Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
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Position: -181
Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT
Position: -173
Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC
Position: -134
Score: 5.6 Sequence: AGGCGTTA-(0)-AGACGTTT
Position: -126
Score: 7.3 Sequence: AGACGTTT-(0)-AGACGTCT
Position: -118
Score: 6.1 Sequence: AGACGTCT-(0)-AAACATAA
Locus tag: SO4057
Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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metJ
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S-adenosylmethionine-responsive transcriptional repressor MetJ
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Position: -29
Score: 6.5 Sequence: AGCCATCT-(0)-AGACTTCT
Locus tag: SO2337
Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
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msrA
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Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
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Position: -152
Score: 6.8 Sequence: AAACATCC-(0)-AGACGTCT
Position: -144
Score: 5.6 Sequence: AGACGTCT-(0)-AGATTGAC
Locus tag: SO1087
Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family |
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metT
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Methionine transporter MetT, NhaC antiporter family
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Position: -431
Score: 6.2 Sequence: ATCCGTAT-(0)-AGACGTCT
Locus tag: SO0815
Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12 |
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btuB
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TonB-dependent outer membrane transporter for vitamin B12
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |