Regulon of MetJ in Shewanella halifaxensis HAW-EB4
| Regulator type: | Transcription factor |
| TF locus tag: | Shal_0621 |
| Regulator family: | MetJ |
| Regulation mode: | repressor |
| Biological process: | Methionine biosynthesis; Methionine metabolism |
| Effector: | S-adenosylmethionine |
| Regulog: | MetJ - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - MetJ
- By TF family - MetJ
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
- By pathway - Methionine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -91
Score: 7.1 Sequence: AAACATCT-(0)-AGACGTCT
Position: -83
Score: 5.3 Sequence: AGACGTCT-(0)-AAATTGAC
Locus tag: Shal_0735
Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family |
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metT
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Methionine transporter MetT, NhaC antiporter family
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Position: -103
Score: 6.3 Sequence: GGACGTCT-(0)-AAACGGCT
Position: -50
Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT
Locus tag: Shal_0622
Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: Shal_0623
Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) |
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metB
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Cystathionine gamma-synthase (EC 2.5.1.48)
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metL
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Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
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Position: -48
Score: 6 Sequence: GGACATAT-(0)-AGACTTCC
Position: -40
Score: 6.6 Sequence: AGACTTCC-(0)-AGATGTCT
Position: -32
Score: 5.4 Sequence: AGATGTCT-(0)-TAATGTAT
Locus tag: Shal_2885
Name: COG3126 Funciton: Lipoprotein-related protein
Locus tag: Shal_2884
Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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COG3126
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Lipoprotein-related protein
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metA
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Homoserine O-succinyltransferase (EC 2.3.1.46)
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Position: -60
Score: 5.8 Sequence: AGCCGTCT-(0)-AGATGTAG
Position: -52
Score: 5.2 Sequence: AGATGTAG-(0)-ATACTTCT
Locus tag: Shal_0843
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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metK
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S-adenosylmethionine synthetase (EC 2.5.1.6)
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Position: -61
Score: 6 Sequence: AGACTTCT-(0)-AGATGGCC
Locus tag: Shal_0737
Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
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metY
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O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
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Position: -128
Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT
Position: -120
Score: 5.7 Sequence: ATACGTAT-(0)-AAATGTCC
Locus tag: Shal_3462
Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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metH
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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Position: -65
Score: 6.4 Sequence: GGACATAT-(0)-AGACGTCC
Position: -57
Score: 7.1 Sequence: AGACGTCC-(0)-AAACGTCT
Locus tag: Shal_0624
Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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metF
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
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Position: -177
Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT
Position: -169
Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC
Position: -124
Score: 6.6 Sequence: AGCCGTTT-(0)-AGACGTCC
Locus tag: Shal_0621
Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ |
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metJ
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S-adenosylmethionine-responsive transcriptional repressor MetJ
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Position: -71
Score: 7 Sequence: AGACGTCT-(0)-AGCCATCT
Position: -63
Score: 5 Sequence: AGCCATCT-(0)-AAGTGGCT
Locus tag: Shal_2236
Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11) |
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msrA
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Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
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Position: -453
Score: 5.8 Sequence: AGACATTT-(0)-AACCGTAT
Position: -445
Score: 6.5 Sequence: AACCGTAT-(0)-AGACGTCT
Locus tag: Shal_3286
Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12 |
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btuB
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TonB-dependent outer membrane transporter for vitamin B12
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Position: -10
Score: 5.1 Sequence: GGCCGTTT-(0)-AGATGTTA
Position: -2
Score: 5.3 Sequence: AGATGTTA-(0)-AGATGGCT
Locus tag: Shal_1732
Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8) |
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metC
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Cystathionine beta-lyase (EC 4.4.1.8)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |