Regulon of MetJ in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_0621
Regulator family:	MetJ
Regulation mode:	repressor
Biological process:	Methionine biosynthesis; Methionine metabolism
Effector:	S-adenosylmethionine
Regulog:	MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes	13
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 397 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - MetJ
By TF family - MetJ
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis
By pathway - Methionine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -91 Score: 7.1 Sequence: AAACATCT-(0)-AGACGTCT Position: -83 Score: 5.3 Sequence: AGACGTCT-(0)-AAATTGAC Locus tag: Shal_0735 Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family
	Shal_0735	metT	Methionine transporter MetT, NhaC antiporter family
Position: -103 Score: 6.3 Sequence: GGACGTCT-(0)-AAACGGCT Position: -50 Score: 7.2 Sequence: AGACGTCC-(0)-AGACATCT Locus tag: Shal_0622 Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: Shal_0623 Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
	Shal_0622	metB	Cystathionine gamma-synthase (EC 2.5.1.48)
	Shal_0623	metL	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -48 Score: 6 Sequence: GGACATAT-(0)-AGACTTCC Position: -40 Score: 6.6 Sequence: AGACTTCC-(0)-AGATGTCT Position: -32 Score: 5.4 Sequence: AGATGTCT-(0)-TAATGTAT Locus tag: Shal_2885 Name: COG3126 Funciton: Lipoprotein-related protein Locus tag: Shal_2884 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	Shal_2885	COG3126	Lipoprotein-related protein
	Shal_2884	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -60 Score: 5.8 Sequence: AGCCGTCT-(0)-AGATGTAG Position: -52 Score: 5.2 Sequence: AGATGTAG-(0)-ATACTTCT Locus tag: Shal_0843 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	Shal_0843	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -61 Score: 6 Sequence: AGACTTCT-(0)-AGATGGCC Locus tag: Shal_0737 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	Shal_0737	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -128 Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT Position: -120 Score: 5.7 Sequence: ATACGTAT-(0)-AAATGTCC Locus tag: Shal_3462 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	Shal_3462	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -65 Score: 6.4 Sequence: GGACATAT-(0)-AGACGTCC Position: -57 Score: 7.1 Sequence: AGACGTCC-(0)-AAACGTCT Locus tag: Shal_0624 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
	Shal_0624	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -177 Score: 7 Sequence: AGATGTCT-(0)-GGACGTCT Position: -169 Score: 6 Sequence: GGACGTCT-(0)-AAATGTAC Position: -124 Score: 6.6 Sequence: AGCCGTTT-(0)-AGACGTCC Locus tag: Shal_0621 Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
	Shal_0621	metJ	S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -71 Score: 7 Sequence: AGACGTCT-(0)-AGCCATCT Position: -63 Score: 5 Sequence: AGCCATCT-(0)-AAGTGGCT Locus tag: Shal_2236 Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
	Shal_2236	msrA	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -453 Score: 5.8 Sequence: AGACATTT-(0)-AACCGTAT Position: -445 Score: 6.5 Sequence: AACCGTAT-(0)-AGACGTCT Locus tag: Shal_3286 Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12
	Shal_3286	btuB	TonB-dependent outer membrane transporter for vitamin B12
Position: -10 Score: 5.1 Sequence: GGCCGTTT-(0)-AGATGTTA Position: -2 Score: 5.3 Sequence: AGATGTTA-(0)-AGATGGCT Locus tag: Shal_1732 Name: metC Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
	Shal_1732	metC	Cystathionine beta-lyase (EC 4.4.1.8)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of MetJ in Shewanella halifaxensis HAW-EB4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --