Regulon of MetJ in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_3172
Regulator family:	MetJ
Regulation mode:	repressor
Biological process:	Methionine biosynthesis; Methionine metabolism
Effector:	S-adenosylmethionine
Regulog:	MetJ - Shewanellaceae
Statistics of regulated genes:
- Genes	13
- Operons	11
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 397 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - MetJ
By TF family - MetJ
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis
By pathway - Methionine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -49 Score: 6 Sequence: GGCCATAT-(0)-AGACGTCC Position: -41 Score: 6.8 Sequence: AGACGTCC-(0)-AAACGTCC Locus tag: Sama_3169 Name: metF Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
	Sama_3169	metF	5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Position: -51 Score: 6.1 Sequence: GGATGTAT-(0)-AGACATCC Position: -43 Score: 6.7 Sequence: AGACATCC-(0)-AGAAGTCT Locus tag: Sama_1373 Name: COG3126 Funciton: Lipoprotein-related protein Locus tag: Sama_1374 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	Sama_1373	COG3126	Lipoprotein-related protein
	Sama_1374	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -127 Score: 6.3 Sequence: GGACGTCT-(0)-ATACGTAT Position: -119 Score: 5.7 Sequence: ATACGTAT-(0)-AAATGTCC Locus tag: Sama_0758 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	Sama_0758	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -105 Score: 7.3 Sequence: AGACGTCT-(0)-AAACGTCT Position: -50 Score: 6.5 Sequence: AGCCATCC-(0)-AGACATCT Locus tag: Sama_3171 Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48) Locus tag: Sama_3170 Name: metL Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
	Sama_3171	metB	Cystathionine gamma-synthase (EC 2.5.1.48)
	Sama_3170	metL	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Position: -91 Score: 6.6 Sequence: AAACTTCT-(0)-AGACGTCC Position: -83 Score: 6.8 Sequence: AGACGTCC-(0)-AGACGCCT Locus tag: Sama_2627 Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
	Sama_2627	metE	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
Position: -61 Score: 5.4 Sequence: GGCCGTCT-(0)-AGATGTAG Locus tag: Sama_2760 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	Sama_2760	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -97 Score: 6.7 Sequence: AGGCGTCT-(0)-GGACGTCT Position: -89 Score: 6.4 Sequence: GGACGTCT-(0)-AGAAGTTT Locus tag: Sama_2628 Name: metR Funciton: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
	Sama_2628	metR	Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family
Position: -180 Score: 6 Sequence: AGATGTCT-(0)-GGATGGCT Position: -125 Score: 7.3 Sequence: AGACGTTT-(0)-AGACGTCT Position: -117 Score: 6.3 Sequence: AGACGTCT-(0)-AAACGTAA Locus tag: Sama_3172 Name: metJ Funciton: S-adenosylmethionine-responsive transcriptional repressor MetJ
	Sama_3172	metJ	S-adenosylmethionine-responsive transcriptional repressor MetJ
Position: -28 Score: 6.5 Sequence: AGCCGTCC-(0)-AGACATCC Locus tag: Sama_1707 Name: msrA Funciton: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
	Sama_1707	msrA	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
Position: -155 Score: 6.6 Sequence: AACCATCT-(0)-AGACGTCT Position: -131 Score: 5.3 Sequence: AGATGGCT-(0)-GGCTATCT Locus tag: Sama_2935 Name: metT Funciton: Methionine transporter MetT, NhaC antiporter family
	Sama_2935	metT	Methionine transporter MetT, NhaC antiporter family
Position: -276 Score: 5.8 Sequence: AGACTTTT-(0)-ATACGTTT Position: -268 Score: 6.6 Sequence: ATACGTTT-(0)-AGACGTCT Locus tag: Sama_2631 Name: btuB Funciton: TonB-dependent outer membrane transporter for vitamin B12
	Sama_2631	btuB	TonB-dependent outer membrane transporter for vitamin B12

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of MetJ in Shewanella amazonensis SB2B

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --