Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_2417
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 73
- Operons 28
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -77
Score: 4.4
Sequence: TTGATCGAGATCAG
Locus tag: Swoo_4146
Name: Sama_0549
Funciton: Conserved hypothetical protein
Swoo_4146
Sama_0549
Conserved hypothetical protein
Position: -196
Score: 3.9
Sequence: GTGATCTGCTGCAA
Position: -166
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Swoo_2635
Name: narK
Funciton: Nitrate/nitrite antiporter
Locus tag: Swoo_2634
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Swoo_2633
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Swoo_2632
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Swoo_2631
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Swoo_2635
narK
Nitrate/nitrite antiporter
Swoo_2634
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Swoo_2633
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Swoo_2632
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Swoo_2631
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -334
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.2
Sequence: ATGATGGGGATCTA
Locus tag: Swoo_1565
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Swoo_1566
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Swoo_1567
Name: ybgT
Funciton: Cyd operon protein YbgT
Swoo_1565
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Swoo_1566
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Swoo_1567
ybgT
Cyd operon protein YbgT
Position: -216
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -173
Score: 4.3
Sequence: TTGACATAGCTCAA
Locus tag: Swoo_2425
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Swoo_2424
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Swoo_2423
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Swoo_2422
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Swoo_2421
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Swoo_2425
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Swoo_2424
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Swoo_2423
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Swoo_2422
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Swoo_2421
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Position: -16
Score: 4.5
Sequence: TTAAACTAGATCAA
Locus tag: Swoo_2420
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Swoo_2419
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Swoo_2418
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Swoo_2417
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Swoo_2420
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Swoo_2419
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Swoo_2418
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Swoo_2417
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -144
Score: 5.2
Sequence: ATGATCTAGCTCAA
Locus tag: Swoo_4818
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Swoo_4817
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Swoo_4816
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Swoo_4815
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Swoo_4814
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Swoo_4813
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Swoo_4812
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Swoo_4811
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
Swoo_4818
SO4504
Conserved hypothetical protein
Swoo_4817
SO4505
Predicted formate dehydrogenase associated protein
Swoo_4816
SO4506
Predicted iron-sulfur cluster-binding protein
Swoo_4815
SO4507
Predicted formate dehydrogenase-specific chaperone
Swoo_4814
fdhX
Formate dehydrogenase subunit or accessory protein
Swoo_4813
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
Swoo_4812
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Swoo_4811
fdhC1
Formate dehydrogenase, gamma subunit
Position: -131
Score: 4.6
Sequence: TTGCGGTAGATCAA
Locus tag: Swoo_0971
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Swoo_0970
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Swoo_0971
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Swoo_0970
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -127
Score: 4.6
Sequence: TTGATCTACCGCAA
Locus tag: Swoo_0972
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Swoo_0972
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -78
Score: 4.5
Sequence: TTGTTCCAGATCAA
Locus tag: Swoo_3303
Name: Shew_2655
Funciton: Conserved hypothetical protein
Swoo_3303
Shew_2655
Conserved hypothetical protein
Position: -70
Score: 4.9
Sequence: TTGATCTAAAGCAA
Locus tag: Swoo_2416
Name: uspE
Funciton: Universal stress protein E
Swoo_2416
uspE
Universal stress protein E
Position: -85
Score: 5.4
Sequence: TTGATGTAGATCAA
Locus tag: Swoo_3608
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Swoo_3607
Name: bfr1
Funciton: Bacterioferritin
Swoo_3608
bfr2
Bacterioferritin
Swoo_3607
bfr1
Bacterioferritin
Position: -154
Score: 4.1
Sequence: GTGAGTTCGATCAA
Position: -104
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Swoo_3207
Name: ompW
Funciton: Outer membrane protein W precursor
Swoo_3207
ompW
Outer membrane protein W precursor
Position: -145
Score: 5.3
Sequence: TTGATCTAGCTCAA
Locus tag: Swoo_0710
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Swoo_0711
Name: cydC
Funciton: Transport ATP-binding protein CydC
Swoo_0710
cydD
Transport ATP-binding protein CydD
Swoo_0711
cydC
Transport ATP-binding protein CydC
Position: -162
Score: 4.5
Sequence: TTGCTCAGGATCAA
Locus tag: Swoo_4794
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Swoo_4794
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -223
Score: 5.1
Sequence: TTGATCCAGATCAT
Locus tag: Swoo_2636
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: Swoo_2637
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
Swoo_2636
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Swoo_2637
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -95
Score: 4.7
Sequence: TTGCGCTAGATCAT
Locus tag: Swoo_2541
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
Swoo_2541
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -88
Score: 4.9
Sequence: TTGATTTGAATCAA
Locus tag: Swoo_0239
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Swoo_0240
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Swoo_0241
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Swoo_0242
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
Swoo_0239
nrfX
Nitrite reductase, predicted component
Swoo_0240
nrfB
Nitrite reductase, subunit B
Swoo_0241
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
Swoo_0242
nrfD
Nitrite reductase, cytochrome c subunit
Position: -151
Score: 4.6
Sequence: TTGATCTTGATCGA
Locus tag: Swoo_4109
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Swoo_4110
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Swoo_4111
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Swoo_4109
napD
Periplasmic nitrate reductase component NapD
Swoo_4110
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Swoo_4111
napB
Nitrate reductase cytochrome c550-type subunit
Position: -187
Score: 4.6
Sequence: TTGATCCTGAGCAA
Locus tag: Swoo_4793
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Swoo_4792
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: Swoo_4791
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Swoo_4790
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Swoo_4789
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Swoo_4788
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Swoo_4787
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Swoo_4786
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Swoo_4793
moaA
Molybdenum cofactor biosynthesis protein MoaA
Swoo_4792
moaB
Molybdenum cofactor biosynthesis protein MoaB
Swoo_4791
moaC
Molybdenum cofactor biosynthesis protein MoaC
Swoo_4790
moaD
Molybdenum cofactor biosynthesis protein D
Swoo_4789
moaE
Molybdenum cofactor biosynthesis protein MoaE
Swoo_4788
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Swoo_4787
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Swoo_4786
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -337
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Swoo_0178
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Swoo_0177
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Swoo_0176
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Swoo_0175
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Swoo_0178
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Swoo_0177
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Swoo_0176
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
Swoo_0175
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -159
Score: 5.1
Sequence: TTGAGCTAGATCAT
Locus tag: Swoo_4819
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Swoo_4820
Name: SO4502
Funciton: Conserved hupothetical protein
Swoo_4819
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
Swoo_4820
SO4502
Conserved hupothetical protein
Position: -101
Score: 4.7
Sequence: GTGATCTTGATCAT
Locus tag: Swoo_0566
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Swoo_0566
nifS
Cysteine desulfurase (EC 2.8.1.7)
Position: -135
Score: 4.3
Sequence: GTGATCTGATTCAA
Locus tag: Swoo_0285
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Swoo_0285
acnB
Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -121
Score: 4.7
Sequence: TTGATCTGTCTCAA
Locus tag: Swoo_1260
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Swoo_1261
Name: hcr
Funciton: HCP oxidoreductase, NADH-dependent
Swoo_1260
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Swoo_1261
hcr
HCP oxidoreductase, NADH-dependent
Position: -163
Score: 4.6
Sequence: TCGATGTGGATCAA
Locus tag: Swoo_2688
Name: Sama_1615
Funciton: Predicted exported protein
Swoo_2688
Sama_1615
Predicted exported protein
Position: -122
Score: 4.8
Sequence: ATGATCAGGATCAA
Locus tag: Swoo_3049
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Swoo_3048
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Swoo_3049
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Swoo_3048
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -226
Score: 4.8
Sequence: TTGATGTAGGTCAA
Locus tag: Swoo_4155
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
Swoo_4155
SO0579
Predicted serine/threonine protein kinase
Position: -134
Score: 4.4
Sequence: GTGATGTGGTTCAA
Locus tag: Swoo_0507
Name: frdC2
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Swoo_0508
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Swoo_0509
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Swoo_0510
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Swoo_0507
frdC2
Fumarate reductase, cytochrome b subunit
Swoo_0508
frdC1
Fumarate reductase, cytochrome b subunit
Swoo_0509
frdA
Fumarate reductase, flavoprotein subunit
Swoo_0510
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
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