Regulon of Fnr in Shewanella sp W3-18-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputw3181_2054
Regulator family:	CRP
Regulation mode:
Biological process:	Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes	78
- Operons	27
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 541 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Oxygen
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -75 Score: 4.2 Sequence: TTGATCAGGATCAG Locus tag: Sputw3181_3398 Name: Sama_0549 Funciton: Conserved hypothetical protein
	Sputw3181_3398	Sama_0549	Conserved hypothetical protein
Position: -152 Score: 4.5 Sequence: GTGATGTGAATCAT Locus tag: Sputw3181_2337 Name: ydhD Funciton: Glutaredoxin-related protein
	Sputw3181_2337	ydhD	Glutaredoxin-related protein
Position: -97 Score: 4.6 Sequence: TTGATCCAGATCAC Locus tag: Sputw3181_3024 Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1)
	Sputw3181_3024	cyaB	Adenylate cyclase (EC 4.6.1.1)
Position: -97 Score: 4.3 Sequence: GTGATTAGGATCAA Locus tag: Sputw3181_3717 Name: hupE Funciton: Predicted metal transporter
	Sputw3181_3717	hupE	Predicted metal transporter
Position: -185 Score: 4.3 Sequence: CTGTTCTAGATCAA Locus tag: Sputw3181_3874 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Sputw3181_3875 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sputw3181_3876 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sputw3181_3877 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Sputw3181_3874	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Sputw3181_3875	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sputw3181_3876	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sputw3181_3877	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -339 Score: 4.9 Sequence: TTGATTTGAATCAA Locus tag: Sputw3181_1366 Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) Locus tag: Sputw3181_1367 Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-) Locus tag: Sputw3181_1368 Name: ybgT Funciton: Cyd operon protein YbgT
	Sputw3181_1366	cydA	Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
	Sputw3181_1367	cydB	Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
	Sputw3181_1368	ybgT	Cyd operon protein YbgT
Position: -210 Score: 5.6 Sequence: TTGATCTAGATCAA Position: -167 Score: 3.9 Sequence: TTGACATTGCTCAA Locus tag: Sputw3181_2046 Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) Locus tag: Sputw3181_2047 Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1) Locus tag: Sputw3181_2048 Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1) Locus tag: Sputw3181_2049 Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1) Locus tag: Sputw3181_2050 Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH Locus tag: Sputw3181_2051 Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) Locus tag: Sputw3181_2052 Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion Locus tag: Sputw3181_2053 Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component Locus tag: Sputw3181_2054 Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
	Sputw3181_2046	ccoN	Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
	Sputw3181_2047	ccoO	Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
	Sputw3181_2048	ccoQ	Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
	Sputw3181_2049	ccoP	Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
	Sputw3181_2050	ccoH	Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
	Sputw3181_2051	ccoI	Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
	Sputw3181_2052	ccoS	Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
	Sputw3181_2053	ccoX	Cytochrome c oxidase, cbb3-type, predicted component
	Sputw3181_2054	fnr	Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -172 Score: 5.4 Sequence: ATGATCTGGATCAA Locus tag: Sputw3181_2107 Name: napE2 Funciton: Periplasmic nitrate reductase component NapE Locus tag: Sputw3181_2106 Name: napD2 Funciton: Periplasmic nitrate reductase component NapD Locus tag: Sputw3181_2105 Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Sputw3181_2104 Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit Locus tag: Sputw3181_2103 Name: napC2 Funciton: Cytochrome c-type protein NapC
	Sputw3181_2107	napE2	Periplasmic nitrate reductase component NapE
	Sputw3181_2106	napD2	Periplasmic nitrate reductase component NapD
	Sputw3181_2105	napA2	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Sputw3181_2104	napB2	Nitrate reductase cytochrome c550-type subunit
	Sputw3181_2103	napC2	Cytochrome c-type protein NapC
Position: -122 Score: 4.9 Sequence: TTGATCTGGCGCAA Locus tag: Sputw3181_3486 Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
	Sputw3181_3486	nrfA	Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -72 Score: 4.9 Sequence: TTGATCTAGAACAA Locus tag: Sputw3181_2055 Name: uspE Funciton: Universal stress protein E
	Sputw3181_2055	uspE	Universal stress protein E
Position: -131 Score: 4.7 Sequence: GTGATATAGATCAT Locus tag: Sputw3181_3312 Name: gltP Funciton: Sodium/glutamate symport protein
	Sputw3181_3312	gltP	Sodium/glutamate symport protein
Position: -305 Score: 4.9 Sequence: GTGATCTTGATCAA Locus tag: Sputw3181_0133 Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) Locus tag: Sputw3181_0132 Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1) Locus tag: Sputw3181_0131 Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery Locus tag: Sputw3181_0130 Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
	Sputw3181_0133	coxB	Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
	Sputw3181_0132	coxA	Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
	Sputw3181_0131	coxZ	Cytochrome c oxidase biogenesis protein, predicted copper delivery
	Sputw3181_0130	coxC	Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -103 Score: 5.3 Sequence: TTGATTTAGATCAA Locus tag: Sputw3181_2709 Name: ompW Funciton: Outer membrane protein W precursor
	Sputw3181_2709	ompW	Outer membrane protein W precursor
Position: -133 Score: 4.5 Sequence: TTGCGCCAGATCAA Locus tag: Sputw3181_3487 Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) Locus tag: Sputw3181_3488 Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
	Sputw3181_3487	narQ	Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
	Sputw3181_3488	narP	Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -198 Score: 4.2 Sequence: TTGGCCTAGATCAA Locus tag: Sputw3181_0242 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	Sputw3181_0242	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -32 Score: 4.2 Sequence: GTGAGCTTAATCAA Locus tag: Sputw3181_1286 Name: aer Funciton: Aerotaxis sensor receptor protein
	Sputw3181_1286	aer	Aerotaxis sensor receptor protein
Position: -127 Score: 4.8 Sequence: TTGAAGTAGATCAT Locus tag: Sputw3181_3865 Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: Sputw3181_3864 Name: SO4502 Funciton: Conserved hupothetical protein
	Sputw3181_3865	fdhD	Formate dehydrogenase chain D (EC 1.2.1.2)
	Sputw3181_3864	SO4502	Conserved hupothetical protein
Position: -44 Score: 5.3 Sequence: TTGATTTAGATCAA Locus tag: Sputw3181_3228 Name: bfr2 Funciton: Bacterioferritin Locus tag: Sputw3181_3227 Name: bfr1 Funciton: Bacterioferritin
	Sputw3181_3228	bfr2	Bacterioferritin
	Sputw3181_3227	bfr1	Bacterioferritin
Position: -143 Score: 4.2 Sequence: TTGATCCCGATCGA Locus tag: Sputw3181_0796 Name: napD Funciton: Periplasmic nitrate reductase component NapD Locus tag: Sputw3181_0795 Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Sputw3181_0794 Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG Locus tag: Sputw3181_0793 Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase) Locus tag: Sputw3181_0792 Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
	Sputw3181_0796	napD	Periplasmic nitrate reductase component NapD
	Sputw3181_0795	napA	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Sputw3181_0794	napG	Periplasmic nitrate reductase, ferredoxin-type protein NapG
	Sputw3181_0793	napH	Polyferredoxin NapH (periplasmic nitrate reductase)
	Sputw3181_0792	napB	Nitrate reductase cytochrome c550-type subunit
Position: -175 Score: 5.3 Sequence: ATGATCTAGATCAT Locus tag: Sputw3181_2834 Name: lldP Funciton: L-lactate permease Locus tag: Sputw3181_2835 Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
	Sputw3181_2834	lldP	L-lactate permease
	Sputw3181_2835	dld	Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -103 Score: 4.9 Sequence: TTGATATACATCAA Locus tag: Sputw3181_1924 Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) Locus tag: Sputw3181_1923 Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1) Locus tag: Sputw3181_1922 Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1) Locus tag: Sputw3181_1921 Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1) Locus tag: Sputw3181_1920 Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1) Locus tag: Sputw3181_1919 Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
	Sputw3181_1924	hyaA	Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
	Sputw3181_1923	hyaB	Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
	Sputw3181_1922	hyaC	Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
	Sputw3181_1921	hyaD	Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
	Sputw3181_1920	hyaE	Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
	Sputw3181_1919	hyaF	Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -203 Score: 3.9 Sequence: ATGACTTAGGTCAA Position: -121 Score: 5.2 Sequence: ATGATCTGGATCAT Locus tag: Sputw3181_2559 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Sputw3181_2558 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Sputw3181_2559	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Sputw3181_2558	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -89 Score: 4.3 Sequence: TTGATCTAGGTAAA Locus tag: Sputw3181_2621 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: Sputw3181_2620 Name: feoB Funciton: Ferrous iron transport protein B
	Sputw3181_2621	feoA	Ferrous iron transport protein A
	Sputw3181_2620	feoB	Ferrous iron transport protein B
Position: -152 Score: 4.3 Sequence: TTGATATAAGTCAA Locus tag: Sputw3181_0643 Name: SO0579 Funciton: Predicted serine/threonine protein kinase
	Sputw3181_0643	SO0579	Predicted serine/threonine protein kinase
Position: -152 Score: 4.5 Sequence: TTGATCTAGGCCAA Locus tag: Sputw3181_0243 Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA Locus tag: Sputw3181_0244 Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC Locus tag: Sputw3181_0245 Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D Locus tag: Sputw3181_0246 Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE Locus tag: Sputw3181_0247 Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) Locus tag: Sputw3181_0248 Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) Locus tag: Sputw3181_0249 Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
	Sputw3181_0243	moaA	Molybdenum cofactor biosynthesis protein MoaA
	Sputw3181_0244	moaC	Molybdenum cofactor biosynthesis protein MoaC
	Sputw3181_0245	moaD	Molybdenum cofactor biosynthesis protein D
	Sputw3181_0246	moaE	Molybdenum cofactor biosynthesis protein MoaE
	Sputw3181_0247	modA	Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
	Sputw3181_0248	modB	Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
	Sputw3181_0249	modC	Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -108 Score: 3.8 Sequence: GTGAGGTAGCTCAC Locus tag: Sputw3181_0498 Name: frdC2 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Sputw3181_0499 Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Sputw3181_0500 Name: frdA Funciton: Fumarate reductase, flavoprotein subunit Locus tag: Sputw3181_0501 Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
	Sputw3181_0498	frdC2	Fumarate reductase, cytochrome b subunit
	Sputw3181_0499	frdC1	Fumarate reductase, cytochrome b subunit
	Sputw3181_0500	frdA	Fumarate reductase, flavoprotein subunit
	Sputw3181_0501	frdB	Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -136 Score: 4.5 Sequence: ATGATCTACTTCAA Locus tag: Sputw3181_3866 Name: SO4504 Funciton: Conserved hypothetical protein Locus tag: Sputw3181_3867 Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein Locus tag: Sputw3181_3868 Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein Locus tag: Sputw3181_3869 Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone Locus tag: Sputw3181_3870 Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein Locus tag: Sputw3181_3871 Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sputw3181_3872 Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sputw3181_3873 Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit
	Sputw3181_3866	SO4504	Conserved hypothetical protein
	Sputw3181_3867	SO4505	Predicted formate dehydrogenase associated protein
	Sputw3181_3868	SO4506	Predicted iron-sulfur cluster-binding protein
	Sputw3181_3869	SO4507	Predicted formate dehydrogenase-specific chaperone
	Sputw3181_3870	fdhX	Formate dehydrogenase subunit or accessory protein
	Sputw3181_3871	fdhA1	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sputw3181_3872	fdhB1	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sputw3181_3873	fdhC1	Formate dehydrogenase, gamma subunit

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Shewanella sp W3-18-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --