Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella sp MR-7

Properties
Regulator type: Transcription factor
TF locus tag: Shewmr7_1961
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 94
- Operons 33
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -153
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Shewmr7_1648
Name: ydhD
Funciton: Glutaredoxin-related protein
ydhD
Glutaredoxin-related protein

Position: -353
Score: 4.2
Sequence: TTTACCTAGATCAA
Locus tag: Shewmr7_2574
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewmr7_2575
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Shewmr7_2576
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
mtrD
Periplasmic decaheme cytochrome c, MtrD
mtrE
Outer membrane protein, MtrE
mtrF
Decaheme cytochrome c, MtrF

Position: -75
Score: 4.9
Sequence: TTGATTTACATCAA
Locus tag: Shewmr7_2301
Name: narK
Funciton: Nitrate/nitrite antiporter
narK
Nitrate/nitrite antiporter

Position: -158
Score: 4.6
Sequence: TTGATCCAGATCAC
Locus tag: Shewmr7_2949
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaB
Adenylate cyclase (EC 4.6.1.1)

Position: -92
Score: 4.2
Sequence: GTGATAAGGATCAA
Locus tag: Shewmr7_3629
Name: hupE
Funciton: Predicted metal transporter
hupE
Predicted metal transporter

Position: -182
Score: 4.3
Sequence: CTGTTCTAGATCAA
Locus tag: Shewmr7_3794
Name: fdhX2
Funciton: Formate dehydrogenase, subunit or accessory protein
Locus tag: Shewmr7_3795
Name: fdhA2
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3796
Name: fdhB2
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3797
Name: fdhC2
Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
fdhX2
Formate dehydrogenase, subunit or accessory protein
fdhA2
Formate dehydrogenase, major subunit (EC 1.2.1.2)
fdhB2
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
fdhC2
Formate dehydrogenase, gamma subunit (EC 1.2.1.2)

Position: -183
Score: 4.8
Sequence: TTGAGGTGGATCAT
Locus tag: Shewmr7_3785
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shewmr7_3784
Name: SO4502
Funciton: Conserved hupothetical protein
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
Conserved hupothetical protein

Position: -104
Score: 5
Sequence: TTGATCTAGCGCAA
Locus tag: Shewmr7_3363
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -338
Score: 4.9
Sequence: TTGATTTGAATCAA
Locus tag: Shewmr7_1310
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shewmr7_1311
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shewmr7_1312
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
ybgT
Cyd operon protein YbgT

Position: -313
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Shewmr7_3864
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Shewmr7_3865
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Shewmr7_3866
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Shewmr7_3867
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)

Position: -122
Score: 4.7
Sequence: GTGATATAGATCAT
Locus tag: Shewmr7_3259
Name: gltP
Funciton: Sodium/glutamate symport protein
gltP
Sodium/glutamate symport protein

Position: -103
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Shewmr7_2668
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -135
Score: 4.9
Sequence: TTGCGCTAGATCAA
Locus tag: Shewmr7_3364
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewmr7_3365
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -202
Score: 4.3
Sequence: TTGATCCGCTTCAA
Locus tag: Shewmr7_3749
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Position: -341
Score: 5.1
Sequence: TTGATGTAAATCAA
Locus tag: Shewmr7_2300
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: Shewmr7_2299
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
narL
Nitrate/nitrite response regulator protein NarL, LuxR family

Position: -164
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Shewmr7_2137
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shewmr7_2136
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_2135
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_2134
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shewmr7_2133
Name: napC2
Funciton: Cytochrome c-type protein NapC
napE2
Periplasmic nitrate reductase component NapE
napD2
Periplasmic nitrate reductase component NapD
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB2
Nitrate reductase cytochrome c550-type subunit
napC2
Cytochrome c-type protein NapC

Position: -80
Score: 4.2
Sequence: GTGAGCTTAATCAA
Locus tag: Shewmr7_1220
Name: aer
Funciton: Aerotaxis sensor receptor protein
aer
Aerotaxis sensor receptor protein

Position: -95
Score: 4.1
Sequence: GTGATCTGTGTCAA
Locus tag: Shewmr7_3838
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Shewmr7_3837
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Shewmr7_3836
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Shewmr7_3835
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
nrfX
Nitrite reductase, predicted component
nrfB
Nitrite reductase, subunit B
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
nrfD
Nitrite reductase, cytochrome c subunit

Position: -145
Score: 4.3
Sequence: TTGATGTGAATCCA
Locus tag: Shewmr7_3272
Name: nqrA1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: Shewmr7_3271
Name: nqrB1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: Shewmr7_3270
Name: nqrC1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: Shewmr7_3269
Name: nqrD1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: Shewmr7_3268
Name: nqrE1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: Shewmr7_3267
Name: nqrF1
Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
nqrA1
Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
nqrB1
Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
nqrC1
Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
nqrD1
Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
nqrE1
Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
nqrF1
Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)

Position: -145
Score: 4.2
Sequence: TTGATCCCGATCGA
Locus tag: Shewmr7_3317
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_3318
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_3319
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewmr7_3320
Name: napH
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shewmr7_3321
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
napH
Polyferredoxin NapH (periplasmic nitrate reductase)
napB
Nitrate reductase cytochrome c550-type subunit

Position: -210
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -167
Score: 4.2
Sequence: TTGACATGGCTCAA
Locus tag: Shewmr7_1969
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Shewmr7_1968
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Shewmr7_1967
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Shewmr7_1966
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Shewmr7_1965
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Shewmr7_1964
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Shewmr7_1963
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Shewmr7_1962
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Shewmr7_1961
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family

Position: -68
Score: 5
Sequence: TTGATCCAAATCAA
Locus tag: Shewmr7_3077
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)

Position: -177
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: Shewmr7_2807
Name: lldP
Funciton: L-lactate permease
Locus tag: Shewmr7_2808
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
lldP
L-lactate permease
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing

Position: -82
Score: 4.3
Sequence: TTGATTTACATCAC
Locus tag: Shewmr7_2028
Name: Sama_2599
Funciton: Predicted lipoprotein
Sama_2599
Predicted lipoprotein

Position: -162
Score: 4.3
Sequence: TAGATCTGCATCAT
Position: -102
Score: 4.8
Sequence: TTGATATGCATCAA
Locus tag: Shewmr7_2155
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shewmr7_2158
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shewmr7_2159
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shewmr7_2160
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)

Position: -121
Score: 5.2
Sequence: ATGATCTGGATCAT
Locus tag: Shewmr7_2511
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr7_2510
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Position: -43
Score: 5.3
Sequence: TTGATTTAGATCAA
Locus tag: Shewmr7_0982
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Shewmr7_0983
Name: bfr1
Funciton: Bacterioferritin
bfr2
Bacterioferritin
bfr1
Bacterioferritin

Position: -87
Score: 4.3
Sequence: TTGATCTAGGTAAA
Locus tag: Shewmr7_2573
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Shewmr7_2572
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -154
Score: 4.9
Sequence: TTGATATAAATCAA
Locus tag: Shewmr7_3451
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
SO0579
Predicted serine/threonine protein kinase

Position: -102
Score: 4.3
Sequence: TTGATCTAACTCAG
Locus tag: Shewmr7_3622
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Shewmr7_3621
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Shewmr7_3620
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
frdC1
Fumarate reductase, cytochrome b subunit
frdA
Fumarate reductase, flavoprotein subunit
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)

Position: -152
Score: 4.7
Sequence: TTGAAGCGGATCAA
Locus tag: Shewmr7_3748
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr7_3747
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr7_3746
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Shewmr7_3745
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr7_3744
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3743
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3742
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein D
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -127
Score: 4.5
Sequence: ATGATCCACCTCAA
Locus tag: Shewmr7_3786
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Shewmr7_3787
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Shewmr7_3788
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Shewmr7_3789
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Shewmr7_3790
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Shewmr7_3791
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3792
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3793
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
SO4504
Conserved hypothetical protein
SO4505
Predicted formate dehydrogenase associated protein
SO4506
Predicted iron-sulfur cluster-binding protein
SO4507
Predicted formate dehydrogenase-specific chaperone
fdhX
Formate dehydrogenase subunit or accessory protein
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
fdhC1
Formate dehydrogenase, gamma subunit

Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: Shewmr7_1960
Name: uspE
Funciton: Universal stress protein E
uspE
Universal stress protein E
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