Regulon of Fnr in Shewanella sp MR-7
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr7_1961 |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Regulog: | Fnr - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 94 |
| - Operons | 33 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Oxygen
- By pathway - Anaerobic metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -153
Score: 4.5 Sequence: GTGATGTGAATCAT
Locus tag: Shewmr7_1648
Name: ydhD Funciton: Glutaredoxin-related protein |
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ydhD
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Glutaredoxin-related protein
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Position: -353
Score: 4.2 Sequence: TTTACCTAGATCAA
Locus tag: Shewmr7_2574
Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewmr7_2575
Name: mtrE Funciton: Outer membrane protein, MtrE
Locus tag: Shewmr7_2576
Name: mtrF Funciton: Decaheme cytochrome c, MtrF |
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mtrD
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Periplasmic decaheme cytochrome c, MtrD
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mtrE
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Outer membrane protein, MtrE
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mtrF
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Decaheme cytochrome c, MtrF
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Position: -75
Score: 4.9 Sequence: TTGATTTACATCAA
Locus tag: Shewmr7_2301
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -158
Score: 4.6 Sequence: TTGATCCAGATCAC
Locus tag: Shewmr7_2949
Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaB
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Adenylate cyclase (EC 4.6.1.1)
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Position: -92
Score: 4.2 Sequence: GTGATAAGGATCAA
Locus tag: Shewmr7_3629
Name: hupE Funciton: Predicted metal transporter |
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hupE
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Predicted metal transporter
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Position: -182
Score: 4.3 Sequence: CTGTTCTAGATCAA
Locus tag: Shewmr7_3794
Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein
Locus tag: Shewmr7_3795
Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3796
Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3797
Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2) |
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fdhX2
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Formate dehydrogenase, subunit or accessory protein
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fdhA2
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Formate dehydrogenase, major subunit (EC 1.2.1.2)
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fdhB2
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Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
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fdhC2
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Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
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Position: -183
Score: 4.8 Sequence: TTGAGGTGGATCAT
Locus tag: Shewmr7_3785
Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shewmr7_3784
Name: SO4502 Funciton: Conserved hupothetical protein |
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fdhD
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Formate dehydrogenase chain D (EC 1.2.1.2)
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SO4502
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Conserved hupothetical protein
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Position: -104
Score: 5 Sequence: TTGATCTAGCGCAA
Locus tag: Shewmr7_3363
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
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nrfA
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Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
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Position: -338
Score: 4.9 Sequence: TTGATTTGAATCAA
Locus tag: Shewmr7_1310
Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Shewmr7_1311
Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Shewmr7_1312
Name: ybgT Funciton: Cyd operon protein YbgT |
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cydA
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Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
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cydB
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Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
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ybgT
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Cyd operon protein YbgT
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Position: -313
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: Shewmr7_3864
Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Shewmr7_3865
Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Shewmr7_3866
Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Shewmr7_3867
Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1) |
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coxB
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Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
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coxA
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Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
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coxZ
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Cytochrome c oxidase biogenesis protein, predicted copper delivery
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coxC
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Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
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Position: -122
Score: 4.7 Sequence: GTGATATAGATCAT
Locus tag: Shewmr7_3259
Name: gltP Funciton: Sodium/glutamate symport protein |
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gltP
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Sodium/glutamate symport protein
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Position: -103
Score: 5.2 Sequence: TTGATTTGGATCAA
Locus tag: Shewmr7_2668
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -135
Score: 4.9 Sequence: TTGCGCTAGATCAA
Locus tag: Shewmr7_3364
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Shewmr7_3365
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -202
Score: 4.3 Sequence: TTGATCCGCTTCAA
Locus tag: Shewmr7_3749
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -341
Score: 5.1 Sequence: TTGATGTAAATCAA
Locus tag: Shewmr7_2300
Name: narX Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: Shewmr7_2299
Name: narL Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family |
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narX
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Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
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narL
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Nitrate/nitrite response regulator protein NarL, LuxR family
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Position: -164
Score: 5.4 Sequence: ATGATCTGGATCAA
Locus tag: Shewmr7_2137
Name: napE2 Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Shewmr7_2136
Name: napD2 Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_2135
Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_2134
Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Shewmr7_2133
Name: napC2 Funciton: Cytochrome c-type protein NapC |
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napE2
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Periplasmic nitrate reductase component NapE
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napD2
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Periplasmic nitrate reductase component NapD
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napA2
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB2
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Nitrate reductase cytochrome c550-type subunit
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napC2
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Cytochrome c-type protein NapC
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Position: -80
Score: 4.2 Sequence: GTGAGCTTAATCAA
Locus tag: Shewmr7_1220
Name: aer Funciton: Aerotaxis sensor receptor protein |
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aer
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Aerotaxis sensor receptor protein
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Position: -95
Score: 4.1 Sequence: GTGATCTGTGTCAA
Locus tag: Shewmr7_3838
Name: nrfX Funciton: Nitrite reductase, predicted component
Locus tag: Shewmr7_3837
Name: nrfB Funciton: Nitrite reductase, subunit B
Locus tag: Shewmr7_3836
Name: nrfC Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Shewmr7_3835
Name: nrfD Funciton: Nitrite reductase, cytochrome c subunit |
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nrfX
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Nitrite reductase, predicted component
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nrfB
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Nitrite reductase, subunit B
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nrfC
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Nitrite reductase, 4Fe-4S ferredoxin subunit
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nrfD
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Nitrite reductase, cytochrome c subunit
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Position: -145
Score: 4.3 Sequence: TTGATGTGAATCCA
Locus tag: Shewmr7_3272
Name: nqrA1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: Shewmr7_3271
Name: nqrB1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: Shewmr7_3270
Name: nqrC1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: Shewmr7_3269
Name: nqrD1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: Shewmr7_3268
Name: nqrE1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: Shewmr7_3267
Name: nqrF1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
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nqrA1
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Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
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nqrB1
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Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
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nqrC1
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Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
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nqrD1
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Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
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nqrE1
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Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
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nqrF1
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Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
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Position: -145
Score: 4.2 Sequence: TTGATCCCGATCGA
Locus tag: Shewmr7_3317
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_3318
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_3319
Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: Shewmr7_3320
Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shewmr7_3321
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit |
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
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Periplasmic nitrate reductase, ferredoxin-type protein NapG
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napH
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Polyferredoxin NapH (periplasmic nitrate reductase)
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napB
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Nitrate reductase cytochrome c550-type subunit
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Position: -210
Score: 5.6 Sequence: TTGATCTAGATCAA
Position: -167
Score: 4.2 Sequence: TTGACATGGCTCAA
Locus tag: Shewmr7_1969
Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Shewmr7_1968
Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Shewmr7_1967
Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Shewmr7_1966
Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Shewmr7_1965
Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Shewmr7_1964
Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Shewmr7_1963
Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Shewmr7_1962
Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Shewmr7_1961
Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family |
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ccoN
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Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
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ccoH
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Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
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ccoI
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Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
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ccoX
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Cytochrome c oxidase, cbb3-type, predicted component
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fnr
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Anaerobic metabolism transcriptional regulator Fnr, Fnr family
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Position: -68
Score: 5 Sequence: TTGATCCAAATCAA
Locus tag: Shewmr7_3077
Name: hmp Funciton: Nitric oxide dioxygenase (EC 1.14.12.17) |
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hmp
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Nitric oxide dioxygenase (EC 1.14.12.17)
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Position: -177
Score: 5.3 Sequence: ATGATCTAGATCAT
Locus tag: Shewmr7_2807
Name: lldP Funciton: L-lactate permease
Locus tag: Shewmr7_2808
Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
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lldP
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L-lactate permease
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dld
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Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
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Position: -82
Score: 4.3 Sequence: TTGATTTACATCAC
Locus tag: Shewmr7_2028
Name: Sama_2599 Funciton: Predicted lipoprotein |
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Sama_2599
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Predicted lipoprotein
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Position: -162
Score: 4.3 Sequence: TAGATCTGCATCAT
Position: -102
Score: 4.8 Sequence: TTGATATGCATCAA
Locus tag: Shewmr7_2155
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Shewmr7_2158
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Shewmr7_2159
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Shewmr7_2160
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
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hyaA
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Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
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hyaB
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Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
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hyaC
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Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
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hyaD
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Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
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hyaE
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Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
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hyaF
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Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
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Position: -121
Score: 5.2 Sequence: ATGATCTGGATCAT
Locus tag: Shewmr7_2511
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Shewmr7_2510
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -43
Score: 5.3 Sequence: TTGATTTAGATCAA
Locus tag: Shewmr7_0982
Name: bfr2 Funciton: Bacterioferritin
Locus tag: Shewmr7_0983
Name: bfr1 Funciton: Bacterioferritin |
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bfr2
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Bacterioferritin
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bfr1
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Bacterioferritin
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Position: -87
Score: 4.3 Sequence: TTGATCTAGGTAAA
Locus tag: Shewmr7_2573
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: Shewmr7_2572
Name: feoB Funciton: Ferrous iron transport protein B |
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feoA
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Ferrous iron transport protein A
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feoB
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Ferrous iron transport protein B
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Position: -154
Score: 4.9 Sequence: TTGATATAAATCAA
Locus tag: Shewmr7_3451
Name: SO0579 Funciton: Predicted serine/threonine protein kinase |
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SO0579
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Predicted serine/threonine protein kinase
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Position: -102
Score: 4.3 Sequence: TTGATCTAACTCAG
Locus tag: Shewmr7_3622
Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Shewmr7_3621
Name: frdA Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Shewmr7_3620
Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1) |
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frdC1
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Fumarate reductase, cytochrome b subunit
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frdA
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Fumarate reductase, flavoprotein subunit
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frdB
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Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
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Position: -152
Score: 4.7 Sequence: TTGAAGCGGATCAA
Locus tag: Shewmr7_3748
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr7_3747
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr7_3746
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Shewmr7_3745
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr7_3744
Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3743
Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3742
Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
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moaA
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Molybdenum cofactor biosynthesis protein MoaA
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moaC
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Molybdenum cofactor biosynthesis protein MoaC
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moaD
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Molybdenum cofactor biosynthesis protein D
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moaE
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Molybdenum cofactor biosynthesis protein MoaE
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modA
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Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
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modC
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Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
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Position: -127
Score: 4.5 Sequence: ATGATCCACCTCAA
Locus tag: Shewmr7_3786
Name: SO4504 Funciton: Conserved hypothetical protein
Locus tag: Shewmr7_3787
Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Shewmr7_3788
Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Shewmr7_3789
Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Shewmr7_3790
Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Shewmr7_3791
Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3792
Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3793
Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit |
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SO4504
|
Conserved hypothetical protein
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SO4505
|
Predicted formate dehydrogenase associated protein
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SO4506
|
Predicted iron-sulfur cluster-binding protein
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SO4507
|
Predicted formate dehydrogenase-specific chaperone
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fdhX
|
Formate dehydrogenase subunit or accessory protein
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fdhA1
|
Formate dehydrogenase, major subunit (EC 1.2.1.2)
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fdhB1
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Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
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fdhC1
|
Formate dehydrogenase, gamma subunit
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Position: -72
Score: 4.9 Sequence: TTGATCTAGAACAA
Locus tag: Shewmr7_1960
Name: uspE Funciton: Universal stress protein E |
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uspE
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Universal stress protein E
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |