Regulon of Fnr in Shewanella sp ANA-3

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewana3_2115
Regulator family:	CRP
Regulation mode:
Biological process:	Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes	85
- Operons	30
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 541 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Oxygen
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -153 Score: 4.5 Sequence: GTGATGTGAATCAT Locus tag: Shewana3_1640 Name: ydhD Funciton: Glutaredoxin-related protein
	Shewana3_1640	ydhD	Glutaredoxin-related protein
Position: -75 Score: 4.2 Sequence: TTGATCAGGATCAG Locus tag: Shewana3_0738 Name: Sama_0549 Funciton: Conserved hypothetical protein
	Shewana3_0738	Sama_0549	Conserved hypothetical protein
Position: -353 Score: 4.2 Sequence: TTTACCTAGATCAA Locus tag: Shewana3_2672 Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD Locus tag: Shewana3_2673 Name: mtrE Funciton: Outer membrane protein, MtrE Locus tag: Shewana3_2674 Name: mtrF Funciton: Decaheme cytochrome c, MtrF
	Shewana3_2672	mtrD	Periplasmic decaheme cytochrome c, MtrD
	Shewana3_2673	mtrE	Outer membrane protein, MtrE
	Shewana3_2674	mtrF	Decaheme cytochrome c, MtrF
Position: -158 Score: 4.6 Sequence: TTGATCCAGATCAC Locus tag: Shewana3_3045 Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1)
	Shewana3_3045	cyaB	Adenylate cyclase (EC 4.6.1.1)
Position: -93 Score: 4.2 Sequence: GTGATAAGGATCAA Locus tag: Shewana3_0395 Name: hupE Funciton: Predicted metal transporter
	Shewana3_0395	hupE	Predicted metal transporter
Position: -182 Score: 4.3 Sequence: CTGTTCTAGATCAA Locus tag: Shewana3_3919 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Shewana3_3920 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Shewana3_3921 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Shewana3_3922 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Shewana3_3919	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Shewana3_3920	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Shewana3_3921	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Shewana3_3922	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -103 Score: 4.3 Sequence: TTGATCTAACTCAG Locus tag: Shewana3_0402 Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Shewana3_0403 Name: frdA Funciton: Fumarate reductase, flavoprotein subunit Locus tag: Shewana3_0404 Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
	Shewana3_0402	frdC1	Fumarate reductase, cytochrome b subunit
	Shewana3_0403	frdA	Fumarate reductase, flavoprotein subunit
	Shewana3_0404	frdB	Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -183 Score: 4.8 Sequence: TTGAGGTGGATCAT Locus tag: Shewana3_3910 Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: Shewana3_3909 Name: SO4502 Funciton: Conserved hupothetical protein
	Shewana3_3910	fdhD	Formate dehydrogenase chain D (EC 1.2.1.2)
	Shewana3_3909	SO4502	Conserved hupothetical protein
Position: -104 Score: 5 Sequence: TTGATCTAGCGCAA Locus tag: Shewana3_0658 Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
	Shewana3_0658	nrfA	Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -338 Score: 4.9 Sequence: TTGATTTGAATCAA Locus tag: Shewana3_1241 Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) Locus tag: Shewana3_1242 Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-) Locus tag: Shewana3_1243 Name: ybgT Funciton: Cyd operon protein YbgT
	Shewana3_1241	cydA	Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
	Shewana3_1242	cydB	Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
	Shewana3_1243	ybgT	Cyd operon protein YbgT
Position: -314 Score: 4.9 Sequence: GTGATCTTGATCAA Locus tag: Shewana3_3991 Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) Locus tag: Shewana3_3992 Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1) Locus tag: Shewana3_3993 Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery Locus tag: Shewana3_3994 Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
	Shewana3_3991	coxB	Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
	Shewana3_3992	coxA	Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
	Shewana3_3993	coxZ	Cytochrome c oxidase biogenesis protein, predicted copper delivery
	Shewana3_3994	coxC	Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -103 Score: 5.2 Sequence: TTGATTTGGATCAA Locus tag: Shewana3_2775 Name: ompW Funciton: Outer membrane protein W precursor
	Shewana3_2775	ompW	Outer membrane protein W precursor
Position: -134 Score: 4.9 Sequence: TTGCGCTAGATCAA Locus tag: Shewana3_0657 Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) Locus tag: Shewana3_0656 Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
	Shewana3_0657	narQ	Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
	Shewana3_0656	narP	Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -122 Score: 4.7 Sequence: GTGATATAGATCAT Locus tag: Shewana3_3362 Name: gltP Funciton: Sodium/glutamate symport protein
	Shewana3_3362	gltP	Sodium/glutamate symport protein
Position: -202 Score: 4.3 Sequence: TTGATCCGCTTCAA Locus tag: Shewana3_0273 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	Shewana3_0273	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -164 Score: 5.4 Sequence: ATGATCTGGATCAA Locus tag: Shewana3_1898 Name: napE2 Funciton: Periplasmic nitrate reductase component NapE Locus tag: Shewana3_1899 Name: napD2 Funciton: Periplasmic nitrate reductase component NapD Locus tag: Shewana3_1900 Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Shewana3_1901 Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit Locus tag: Shewana3_1902 Name: napC2 Funciton: Cytochrome c-type protein NapC
	Shewana3_1898	napE2	Periplasmic nitrate reductase component NapE
	Shewana3_1899	napD2	Periplasmic nitrate reductase component NapD
	Shewana3_1900	napA2	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Shewana3_1901	napB2	Nitrate reductase cytochrome c550-type subunit
	Shewana3_1902	napC2	Cytochrome c-type protein NapC
Position: -95 Score: 4.2 Sequence: GTGATCTATGTCAA Locus tag: Shewana3_3963 Name: nrfX Funciton: Nitrite reductase, predicted component Locus tag: Shewana3_3962 Name: nrfB Funciton: Nitrite reductase, subunit B Locus tag: Shewana3_3961 Name: nrfC Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit Locus tag: Shewana3_3960 Name: nrfD Funciton: Nitrite reductase, cytochrome c subunit
	Shewana3_3963	nrfX	Nitrite reductase, predicted component
	Shewana3_3962	nrfB	Nitrite reductase, subunit B
	Shewana3_3961	nrfC	Nitrite reductase, 4Fe-4S ferredoxin subunit
	Shewana3_3960	nrfD	Nitrite reductase, cytochrome c subunit
Position: -145 Score: 4.2 Sequence: TTGATCCCGATCGA Locus tag: Shewana3_3429 Name: napD Funciton: Periplasmic nitrate reductase component NapD Locus tag: Shewana3_3430 Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Shewana3_3431 Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG Locus tag: Shewana3_3432 Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase) Locus tag: Shewana3_3433 Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
	Shewana3_3429	napD	Periplasmic nitrate reductase component NapD
	Shewana3_3430	napA	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Shewana3_3431	napG	Periplasmic nitrate reductase, ferredoxin-type protein NapG
	Shewana3_3432	napH	Polyferredoxin NapH (periplasmic nitrate reductase)
	Shewana3_3433	napB	Nitrate reductase cytochrome c550-type subunit
Position: -210 Score: 5.6 Sequence: TTGATCTAGATCAA Position: -167 Score: 4.2 Sequence: TTGACATGGCTCAA Locus tag: Shewana3_2107 Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) Locus tag: Shewana3_2108 Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1) Locus tag: Shewana3_2109 Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1) Locus tag: Shewana3_2110 Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1) Locus tag: Shewana3_2111 Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH Locus tag: Shewana3_2112 Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) Locus tag: Shewana3_2113 Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion Locus tag: Shewana3_2114 Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component Locus tag: Shewana3_2115 Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
	Shewana3_2107	ccoN	Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
	Shewana3_2108	ccoO	Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
	Shewana3_2109	ccoQ	Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
	Shewana3_2110	ccoP	Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
	Shewana3_2111	ccoH	Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
	Shewana3_2112	ccoI	Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
	Shewana3_2113	ccoS	Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
	Shewana3_2114	ccoX	Cytochrome c oxidase, cbb3-type, predicted component
	Shewana3_2115	fnr	Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -68 Score: 5 Sequence: TTGATCCAAATCAA Locus tag: Shewana3_3174 Name: hmp Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
	Shewana3_3174	hmp	Nitric oxide dioxygenase (EC 1.14.12.17)
Position: -177 Score: 5.3 Sequence: ATGATCTAGATCAT Locus tag: Shewana3_2904 Name: lldP Funciton: L-lactate permease Locus tag: Shewana3_2905 Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
	Shewana3_2904	lldP	L-lactate permease
	Shewana3_2905	dld	Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -162 Score: 4.3 Sequence: TAGATCTGCATCAT Position: -102 Score: 4.8 Sequence: TTGATATGCATCAA Locus tag: Shewana3_1880 Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) Locus tag: Shewana3_1879 Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1) Locus tag: Shewana3_1878 Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1) Locus tag: Shewana3_1877 Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1) Locus tag: Shewana3_1876 Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1) Locus tag: Shewana3_1875 Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
	Shewana3_1880	hyaA	Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
	Shewana3_1879	hyaB	Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
	Shewana3_1878	hyaC	Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
	Shewana3_1877	hyaD	Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
	Shewana3_1876	hyaE	Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
	Shewana3_1875	hyaF	Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -121 Score: 5.2 Sequence: ATGATCTGGATCAT Locus tag: Shewana3_2603 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Shewana3_2602 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Shewana3_2603	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Shewana3_2602	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -87 Score: 4.3 Sequence: TTGATCTAGGTAAA Locus tag: Shewana3_2671 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: Shewana3_2670 Name: feoB Funciton: Ferrous iron transport protein B
	Shewana3_2671	feoA	Ferrous iron transport protein A
	Shewana3_2670	feoB	Ferrous iron transport protein B
Position: -152 Score: 4.9 Sequence: TTGATATAAATCAA Locus tag: Shewana3_0578 Name: SO0579 Funciton: Predicted serine/threonine protein kinase
	Shewana3_0578	SO0579	Predicted serine/threonine protein kinase
Position: -43 Score: 5.3 Sequence: TTGATTTAGATCAA Locus tag: Shewana3_0946 Name: bfr2 Funciton: Bacterioferritin Locus tag: Shewana3_0947 Name: bfr1 Funciton: Bacterioferritin
	Shewana3_0946	bfr2	Bacterioferritin
	Shewana3_0947	bfr1	Bacterioferritin
Position: -152 Score: 4.7 Sequence: TTGAAGCGGATCAA Locus tag: Shewana3_0274 Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA Locus tag: Shewana3_0275 Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC Locus tag: Shewana3_0276 Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D Locus tag: Shewana3_0277 Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE Locus tag: Shewana3_0278 Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) Locus tag: Shewana3_0279 Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) Locus tag: Shewana3_0280 Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
	Shewana3_0274	moaA	Molybdenum cofactor biosynthesis protein MoaA
	Shewana3_0275	moaC	Molybdenum cofactor biosynthesis protein MoaC
	Shewana3_0276	moaD	Molybdenum cofactor biosynthesis protein D
	Shewana3_0277	moaE	Molybdenum cofactor biosynthesis protein MoaE
	Shewana3_0278	modA	Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
	Shewana3_0279	modB	Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
	Shewana3_0280	modC	Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -127 Score: 4.5 Sequence: ATGATCCACCTCAA Locus tag: Shewana3_3911 Name: SO4504 Funciton: Conserved hypothetical protein Locus tag: Shewana3_3912 Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein Locus tag: Shewana3_3913 Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein Locus tag: Shewana3_3914 Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone Locus tag: Shewana3_3915 Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein Locus tag: Shewana3_3916 Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Shewana3_3917 Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Shewana3_3918 Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit
	Shewana3_3911	SO4504	Conserved hypothetical protein
	Shewana3_3912	SO4505	Predicted formate dehydrogenase associated protein
	Shewana3_3913	SO4506	Predicted iron-sulfur cluster-binding protein
	Shewana3_3914	SO4507	Predicted formate dehydrogenase-specific chaperone
	Shewana3_3915	fdhX	Formate dehydrogenase subunit or accessory protein
	Shewana3_3916	fdhA1	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Shewana3_3917	fdhB1	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Shewana3_3918	fdhC1	Formate dehydrogenase, gamma subunit
Position: -80 Score: 4.2 Sequence: GTGAGCTTAATCAA Locus tag: Shewana3_1150 Name: aer Funciton: Aerotaxis sensor receptor protein
	Shewana3_1150	aer	Aerotaxis sensor receptor protein
Position: -72 Score: 4.9 Sequence: TTGATCTAGAACAA Locus tag: Shewana3_2116 Name: uspE Funciton: Universal stress protein E
	Shewana3_2116	uspE	Universal stress protein E

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Shewanella sp ANA-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --