Regulon of Fnr in Shewanella putrefaciens CN-32

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputcn32_1951
Regulator family:	CRP
Regulation mode:
Biological process:	Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes	82
- Operons	28
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 541 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Oxygen
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -75 Score: 4.2 Sequence: TTGATCAGGATCAG Locus tag: Sputcn32_0777 Name: Sama_0549 Funciton: Conserved hypothetical protein
	Sputcn32_0777	Sama_0549	Conserved hypothetical protein
Position: -152 Score: 4.5 Sequence: GTGATGTGAATCAT Locus tag: Sputcn32_1688 Name: ydhD Funciton: Glutaredoxin-related protein
	Sputcn32_1688	ydhD	Glutaredoxin-related protein
Position: -97 Score: 4.6 Sequence: TTGATCCAGATCAC Locus tag: Sputcn32_1140 Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1)
	Sputcn32_1140	cyaB	Adenylate cyclase (EC 4.6.1.1)
Position: -339 Score: 4.9 Sequence: TTGATTTGAATCAA Locus tag: Sputcn32_2641 Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) Locus tag: Sputcn32_2640 Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-) Locus tag: Sputcn32_2639 Name: ybgT Funciton: Cyd operon protein YbgT
	Sputcn32_2641	cydA	Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
	Sputcn32_2640	cydB	Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
	Sputcn32_2639	ybgT	Cyd operon protein YbgT
Position: -97 Score: 4.3 Sequence: GTGATTAGGATCAA Locus tag: Sputcn32_3578 Name: hupE Funciton: Predicted metal transporter
	Sputcn32_3578	hupE	Predicted metal transporter
Position: -32 Score: 4.2 Sequence: GTGAGCTTAATCAA Locus tag: Sputcn32_2726 Name: aer Funciton: Aerotaxis sensor receptor protein
	Sputcn32_2726	aer	Aerotaxis sensor receptor protein
Position: -184 Score: 4.3 Sequence: CTGTTCTAGATCAA Locus tag: Sputcn32_0334 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Sputcn32_0333 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sputcn32_0332 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sputcn32_0331 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Sputcn32_0334	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Sputcn32_0333	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sputcn32_0332	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sputcn32_0331	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -108 Score: 3.8 Sequence: GTGAGGTAGCTCAC Locus tag: Sputcn32_3441 Name: frdC2 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Sputcn32_3440 Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Sputcn32_3439 Name: frdA Funciton: Fumarate reductase, flavoprotein subunit Locus tag: Sputcn32_3438 Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
	Sputcn32_3441	frdC2	Fumarate reductase, cytochrome b subunit
	Sputcn32_3440	frdC1	Fumarate reductase, cytochrome b subunit
	Sputcn32_3439	frdA	Fumarate reductase, flavoprotein subunit
	Sputcn32_3438	frdB	Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -210 Score: 5.6 Sequence: TTGATCTAGATCAA Position: -167 Score: 3.9 Sequence: TTGACATTGCTCAA Locus tag: Sputcn32_1959 Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) Locus tag: Sputcn32_1958 Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1) Locus tag: Sputcn32_1957 Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1) Locus tag: Sputcn32_1956 Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1) Locus tag: Sputcn32_1955 Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH Locus tag: Sputcn32_1954 Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) Locus tag: Sputcn32_1953 Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion Locus tag: Sputcn32_1952 Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component Locus tag: Sputcn32_1951 Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
	Sputcn32_1959	ccoN	Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
	Sputcn32_1958	ccoO	Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
	Sputcn32_1957	ccoQ	Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
	Sputcn32_1956	ccoP	Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
	Sputcn32_1955	ccoH	Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
	Sputcn32_1954	ccoI	Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
	Sputcn32_1953	ccoS	Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
	Sputcn32_1952	ccoX	Cytochrome c oxidase, cbb3-type, predicted component
	Sputcn32_1951	fnr	Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -172 Score: 5.4 Sequence: ATGATCTGGATCAA Locus tag: Sputcn32_1901 Name: napE2 Funciton: Periplasmic nitrate reductase component NapE Locus tag: Sputcn32_1902 Name: napD2 Funciton: Periplasmic nitrate reductase component NapD Locus tag: Sputcn32_1903 Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Sputcn32_1904 Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit Locus tag: Sputcn32_1905 Name: napC2 Funciton: Cytochrome c-type protein NapC
	Sputcn32_1901	napE2	Periplasmic nitrate reductase component NapE
	Sputcn32_1902	napD2	Periplasmic nitrate reductase component NapD
	Sputcn32_1903	napA2	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Sputcn32_1904	napB2	Nitrate reductase cytochrome c550-type subunit
	Sputcn32_1905	napC2	Cytochrome c-type protein NapC
Position: -122 Score: 4.9 Sequence: TTGATCTGGCGCAA Locus tag: Sputcn32_0685 Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
	Sputcn32_0685	nrfA	Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -72 Score: 4.9 Sequence: TTGATCTAGAACAA Locus tag: Sputcn32_1950 Name: uspE Funciton: Universal stress protein E
	Sputcn32_1950	uspE	Universal stress protein E
Position: -131 Score: 4.7 Sequence: GTGATATAGATCAT Locus tag: Sputcn32_0863 Name: gltP Funciton: Sodium/glutamate symport protein
	Sputcn32_0863	gltP	Sodium/glutamate symport protein
Position: -103 Score: 5.3 Sequence: TTGATTTAGATCAA Locus tag: Sputcn32_1392 Name: ompW Funciton: Outer membrane protein W precursor
	Sputcn32_1392	ompW	Outer membrane protein W precursor
Position: -133 Score: 4.5 Sequence: TTGCGCCAGATCAA Locus tag: Sputcn32_0684 Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) Locus tag: Sputcn32_0683 Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
	Sputcn32_0684	narQ	Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
	Sputcn32_0683	narP	Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -198 Score: 4.2 Sequence: TTGGCCTAGATCAA Locus tag: Sputcn32_0388 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	Sputcn32_0388	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -305 Score: 4.9 Sequence: GTGATCTTGATCAA Locus tag: Sputcn32_3782 Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) Locus tag: Sputcn32_3783 Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1) Locus tag: Sputcn32_3784 Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery Locus tag: Sputcn32_3785 Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
	Sputcn32_3782	coxB	Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
	Sputcn32_3783	coxA	Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
	Sputcn32_3784	coxZ	Cytochrome c oxidase biogenesis protein, predicted copper delivery
	Sputcn32_3785	coxC	Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -183 Score: 4.8 Sequence: TTGAAGTAGATCAT Locus tag: Sputcn32_0343 Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: Sputcn32_0344 Name: SO4502 Funciton: Conserved hupothetical protein
	Sputcn32_0343	fdhD	Formate dehydrogenase chain D (EC 1.2.1.2)
	Sputcn32_0344	SO4502	Conserved hupothetical protein
Position: -44 Score: 5.3 Sequence: TTGATTTAGATCAA Locus tag: Sputcn32_0948 Name: bfr2 Funciton: Bacterioferritin Locus tag: Sputcn32_0949 Name: bfr1 Funciton: Bacterioferritin
	Sputcn32_0948	bfr2	Bacterioferritin
	Sputcn32_0949	bfr1	Bacterioferritin
Position: -95 Score: 3.8 Sequence: GTGATGCTGGTCAA Locus tag: Sputcn32_0312 Name: nrfX Funciton: Nitrite reductase, predicted component Locus tag: Sputcn32_0313 Name: nrfB Funciton: Nitrite reductase, subunit B Locus tag: Sputcn32_0314 Name: nrfC Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit Locus tag: Sputcn32_0315 Name: nrfD Funciton: Nitrite reductase, cytochrome c subunit
	Sputcn32_0312	nrfX	Nitrite reductase, predicted component
	Sputcn32_0313	nrfB	Nitrite reductase, subunit B
	Sputcn32_0314	nrfC	Nitrite reductase, 4Fe-4S ferredoxin subunit
	Sputcn32_0315	nrfD	Nitrite reductase, cytochrome c subunit
Position: -143 Score: 4.2 Sequence: TTGATCCCGATCGA Locus tag: Sputcn32_3147 Name: napD Funciton: Periplasmic nitrate reductase component NapD Locus tag: Sputcn32_3148 Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Sputcn32_3149 Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG Locus tag: Sputcn32_3150 Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase) Locus tag: Sputcn32_3151 Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
	Sputcn32_3147	napD	Periplasmic nitrate reductase component NapD
	Sputcn32_3148	napA	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Sputcn32_3149	napG	Periplasmic nitrate reductase, ferredoxin-type protein NapG
	Sputcn32_3150	napH	Polyferredoxin NapH (periplasmic nitrate reductase)
	Sputcn32_3151	napB	Nitrate reductase cytochrome c550-type subunit
Position: -175 Score: 5.3 Sequence: ATGATCTAGATCAT Locus tag: Sputcn32_1272 Name: lldP Funciton: L-lactate permease Locus tag: Sputcn32_1271 Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
	Sputcn32_1272	lldP	L-lactate permease
	Sputcn32_1271	dld	Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -103 Score: 4.9 Sequence: TTGATATACATCAA Locus tag: Sputcn32_2088 Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) Locus tag: Sputcn32_2089 Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1) Locus tag: Sputcn32_2090 Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1) Locus tag: Sputcn32_2091 Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1) Locus tag: Sputcn32_2092 Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1) Locus tag: Sputcn32_2093 Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
	Sputcn32_2088	hyaA	Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
	Sputcn32_2089	hyaB	Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
	Sputcn32_2090	hyaC	Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
	Sputcn32_2091	hyaD	Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
	Sputcn32_2092	hyaE	Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
	Sputcn32_2093	hyaF	Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -203 Score: 3.9 Sequence: ATGACTTAGGTCAA Position: -121 Score: 5.2 Sequence: ATGATCTGGATCAT Locus tag: Sputcn32_1540 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Sputcn32_1541 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Sputcn32_1540	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Sputcn32_1541	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -89 Score: 4.3 Sequence: TTGATCTAGGTAAA Locus tag: Sputcn32_1480 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: Sputcn32_1481 Name: feoB Funciton: Ferrous iron transport protein B
	Sputcn32_1480	feoA	Ferrous iron transport protein A
	Sputcn32_1481	feoB	Ferrous iron transport protein B
Position: -152 Score: 4.3 Sequence: TTGATATAAGTCAA Locus tag: Sputcn32_3298 Name: SO0579 Funciton: Predicted serine/threonine protein kinase
	Sputcn32_3298	SO0579	Predicted serine/threonine protein kinase
Position: -152 Score: 4.5 Sequence: TTGATCTAGGCCAA Locus tag: Sputcn32_0389 Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA Locus tag: Sputcn32_0390 Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC Locus tag: Sputcn32_0391 Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D Locus tag: Sputcn32_0392 Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE Locus tag: Sputcn32_0393 Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) Locus tag: Sputcn32_0394 Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) Locus tag: Sputcn32_0395 Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
	Sputcn32_0389	moaA	Molybdenum cofactor biosynthesis protein MoaA
	Sputcn32_0390	moaC	Molybdenum cofactor biosynthesis protein MoaC
	Sputcn32_0391	moaD	Molybdenum cofactor biosynthesis protein D
	Sputcn32_0392	moaE	Molybdenum cofactor biosynthesis protein MoaE
	Sputcn32_0393	modA	Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
	Sputcn32_0394	modB	Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
	Sputcn32_0395	modC	Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -230 Score: 4.1 Sequence: GTGATCTATCGCAA Position: -136 Score: 4.5 Sequence: ATGATCTACTTCAA Locus tag: Sputcn32_0342 Name: SO4504 Funciton: Conserved hypothetical protein Locus tag: Sputcn32_0341 Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein Locus tag: Sputcn32_0340 Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein Locus tag: Sputcn32_0339 Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone Locus tag: Sputcn32_0338 Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein Locus tag: Sputcn32_0337 Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sputcn32_0336 Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sputcn32_0335 Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit
	Sputcn32_0342	SO4504	Conserved hypothetical protein
	Sputcn32_0341	SO4505	Predicted formate dehydrogenase associated protein
	Sputcn32_0340	SO4506	Predicted iron-sulfur cluster-binding protein
	Sputcn32_0339	SO4507	Predicted formate dehydrogenase-specific chaperone
	Sputcn32_0338	fdhX	Formate dehydrogenase subunit or accessory protein
	Sputcn32_0337	fdhA1	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sputcn32_0336	fdhB1	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sputcn32_0335	fdhC1	Formate dehydrogenase, gamma subunit

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Shewanella putrefaciens CN-32

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --