Regulon of Fnr in Shewanella piezotolerans WP3
| Regulator type: | Transcription factor |
| TF locus tag: | swp_2580 |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Regulog: | Fnr - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 71 |
| - Operons | 31 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Oxygen
- By pathway - Anaerobic metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -149
Score: 3.9 Sequence: GTGAAGTGTATCAT
Locus tag: swp_2753
Name: ydhD Funciton: Glutaredoxin-related protein |
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ydhD
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Glutaredoxin-related protein
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Position: 0
Score: 4.4 Sequence: TTGACCAAGATCAA
Locus tag: swp_4510
Name: Sama_0549 Funciton: Conserved hypothetical protein |
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Sama_0549
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Conserved hypothetical protein
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Position: -366
Score: 4.9 Sequence: TTTATCTAGATCAA
Position: -181
Score: 3.8 Sequence: GTGACGTAGATCAC
Locus tag: swp_3272
Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE Funciton: Outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF Funciton: Decaheme cytochrome c, MtrF |
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mtrD
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Periplasmic decaheme cytochrome c, MtrD
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mtrE
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Outer membrane protein, MtrE
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mtrF
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Decaheme cytochrome c, MtrF
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Position: -72
Score: 4.9 Sequence: TTGATTTAAATCAA
Locus tag: swp_1991
Name: aer Funciton: Aerotaxis sensor receptor protein |
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aer
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Aerotaxis sensor receptor protein
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Position: -94
Score: 4 Sequence: TTGACTTAGATCAC
Locus tag: swp_3798
Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaB
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Adenylate cyclase (EC 4.6.1.1)
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Position: -332
Score: 4.9 Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4 Sequence: TTGATGGGGATCTA
Locus tag: swp_1469
Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: swp_1470
Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: swp_1471
Name: ybgT Funciton: Cyd operon protein YbgT |
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cydA
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Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
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cydB
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Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
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ybgT
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Cyd operon protein YbgT
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Position: -217
Score: 5.6 Sequence: TTGATCTAGATCAA
Position: -174
Score: 4.3 Sequence: TTGACATAGCTCAA
Locus tag: swp_2572
Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: swp_2573
Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: swp_2574
Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: swp_2575
Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: swp_2576
Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: swp_2577
Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: swp_2578
Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: swp_2579
Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: swp_2580
Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family |
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ccoN
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Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
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ccoH
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Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
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ccoI
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Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
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ccoX
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Cytochrome c oxidase, cbb3-type, predicted component
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fnr
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Anaerobic metabolism transcriptional regulator Fnr, Fnr family
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Position: -86
Score: 4.9 Sequence: TTGATGTATATCAA
Locus tag: swp_3063
Name: hupE Funciton: Predicted metal transporter |
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hupE
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Predicted metal transporter
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Position: -128
Score: 4.1 Sequence: ATGATCTTGCTCAC
Position: -79
Score: 4.8 Sequence: TTGTTCTGGATCAA
Locus tag: swp_1107
Name: Shew_2655 Funciton: Conserved hypothetical protein |
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Shew_2655
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Conserved hypothetical protein
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Position: -134
Score: 4.1 Sequence: GTGATCTTGCTCTA
Locus tag: swp_0428
Name: frdC2 Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: swp_0429
Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: swp_0430
Name: frdA Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: swp_0431
Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1) |
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frdC2
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Fumarate reductase, cytochrome b subunit
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frdC1
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Fumarate reductase, cytochrome b subunit
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frdA
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Fumarate reductase, flavoprotein subunit
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frdB
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Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
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Position: -123
Score: 4.6 Sequence: TTGATCTAACGCAA
Locus tag: swp_3958
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
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nrfA
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Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
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Position: -71
Score: 4.6 Sequence: TTGATCTAAAACAA
Locus tag: swp_2581
Name: uspE Funciton: Universal stress protein E |
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uspE
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Universal stress protein E
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Position: -108
Score: 4.3 Sequence: GTGATACAGATCAT
Locus tag: swp_4258
Name: gltP Funciton: Sodium/glutamate symport protein |
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gltP
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Sodium/glutamate symport protein
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Position: -35
Score: 5.2 Sequence: TTGATATAGATCAA
Locus tag: swp_1175
Name: bfr2 Funciton: Bacterioferritin
Locus tag: swp_1176
Name: bfr1 Funciton: Bacterioferritin |
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bfr2
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Bacterioferritin
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bfr1
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Bacterioferritin
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Position: -107
Score: 5.6 Sequence: TTGATCTAGATCAA
Locus tag: swp_3395
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -118
Score: 5 Sequence: TTGATCTAGTTCAA
Locus tag: swp_5034
Name: SO4504 Funciton: Conserved hypothetical protein
Locus tag: swp_5033
Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein
Locus tag: swp_5032
Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: swp_5031
Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: swp_5030
Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: swp_5029
Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: swp_5028
Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: swp_5027
Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit |
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SO4504
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Conserved hypothetical protein
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SO4505
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Predicted formate dehydrogenase associated protein
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SO4506
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Predicted iron-sulfur cluster-binding protein
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SO4507
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Predicted formate dehydrogenase-specific chaperone
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fdhX
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Formate dehydrogenase subunit or accessory protein
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fdhA1
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Formate dehydrogenase, major subunit (EC 1.2.1.2)
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fdhB1
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Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
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fdhC1
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Formate dehydrogenase, gamma subunit
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Position: -366
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: swp_4823
Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: swp_4824
Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: swp_4825
Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: swp_4826
Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1) |
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coxB
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Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
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coxA
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Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
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coxZ
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Cytochrome c oxidase biogenesis protein, predicted copper delivery
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coxC
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Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
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Position: -95
Score: 4.7 Sequence: TTGAGATAGATCAT
Locus tag: swp_2388
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -376
Score: 4.7 Sequence: TTGATCCACATCAT
Locus tag: swp_1813
Name: lldP Funciton: L-lactate permease
Locus tag: swp_1812
Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
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lldP
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L-lactate permease
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dld
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Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
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Position: -233
Score: 4 Sequence: TTAATGTAGCGCAA
Position: -138
Score: 4.1 Sequence: TTGATCTTGGTCGA
Locus tag: swp_4456
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: swp_4457
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: swp_4458
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit |
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB
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Nitrate reductase cytochrome c550-type subunit
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Position: -128
Score: 4.8 Sequence: CTGATCTAGATCAT
Locus tag: swp_3631
Name: lldP Funciton: L-lactate permease
Locus tag: swp_3632
Name: lldP Funciton: L-lactate permease
Locus tag: swp_3633
Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
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lldP
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L-lactate permease
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lldP
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L-lactate permease
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dld
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Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
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Position: -106
Score: 4.7 Sequence: GTGATCTTGATCAT
Locus tag: swp_4605
Name: nifS Funciton: Cysteine desulfurase (EC 2.8.1.7) |
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nifS
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Cysteine desulfurase (EC 2.8.1.7)
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Position: -301
Score: 4.9 Sequence: TAGATCTAGATCAA
Position: -131
Score: 5 Sequence: TTGATCTGGATCGA
Locus tag: swp_0240
Name: Sfri_3879 Funciton: Predicted sodium/sulphate symporter |
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Sfri_3879
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Predicted sodium/sulphate symporter
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Position: -135
Score: 4.1 Sequence: GTGATCTGATTCAT
Locus tag: swp_4740
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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acnB
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Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -80
Score: 4.5 Sequence: ATGAGCTAGCGCAA
Locus tag: swp_0691
Name: Spea_3602 Funciton: Predicted sensor histidine kinase, two-component system
Locus tag: swp_0692
Name: Spea_3601 Funciton: Predicted response regulator, two-component system
Locus tag: swp_0694
Name: Shal_3689 Funciton: Doubled CXXCH motif protein |
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Spea_3602
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Predicted sensor histidine kinase, two-component system
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Spea_3601
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Predicted response regulator, two-component system
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Shal_3689
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Doubled CXXCH motif protein
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Position: -113
Score: 4.6 Sequence: TCGATCTAGATCAT
Locus tag: swp_0235
Name: oprP Funciton: Phosphate-specific outer membrane porin
Locus tag: swp_0234
Name: phoX Funciton: Conserved hypothetical protein
Locus tag: swp_0233
Name: phoU Funciton: Phosphate transport regulatory protein |
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oprP
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Phosphate-specific outer membrane porin
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phoX
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Conserved hypothetical protein
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phoU
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Phosphate transport regulatory protein
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Position: -157
Score: 4.7 Sequence: TTGATGTTAATCAA
Locus tag: swp_2784
Name: Sama_1615 Funciton: Predicted exported protein |
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Sama_1615
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Predicted exported protein
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Position: -184
Score: 4.4 Sequence: TTGATATAGCTCTA
Locus tag: swp_2949
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: swp_2948
Name: sucB Funciton: 2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
Locus tag: swp_2947
Name: sucC Funciton: Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
Locus tag: swp_2946
Name: sucD Funciton: Succinyl-CoA ligase, alpha chain (EC 6.2.1.5) |
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
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sucC
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Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
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Position: -122
Score: 5.4 Sequence: ATGATCTGGATCAA
Position: -62
Score: 3.8 Sequence: TTGATTTAAAGTAA
Locus tag: swp_3165
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: swp_3164
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -91
Score: 4.9 Sequence: TTGATCTAGATAAA
Locus tag: swp_3271
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB Funciton: Ferrous iron transport protein B |
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feoA
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Ferrous iron transport protein A
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feoB
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Ferrous iron transport protein B
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Position: -140
Score: 4.9 Sequence: TTGATATACATCAA
Locus tag: swp_4517
Name: SO0579 Funciton: Predicted serine/threonine protein kinase |
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SO0579
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Predicted serine/threonine protein kinase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |