Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_2580
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 71
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -149
Score: 3.9
Sequence: GTGAAGTGTATCAT
Locus tag: swp_2753
Name: ydhD
Funciton: Glutaredoxin-related protein
swp_2753
ydhD
Glutaredoxin-related protein
Position: 0
Score: 4.4
Sequence: TTGACCAAGATCAA
Locus tag: swp_4510
Name: Sama_0549
Funciton: Conserved hypothetical protein
swp_4510
Sama_0549
Conserved hypothetical protein
Position: -366
Score: 4.9
Sequence: TTTATCTAGATCAA
Position: -181
Score: 3.8
Sequence: GTGACGTAGATCAC
Locus tag: swp_3272
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
swp_3272
mtrD
Periplasmic decaheme cytochrome c, MtrD
swp_3273
mtrE
Outer membrane protein, MtrE
swp_3274
mtrF
Decaheme cytochrome c, MtrF
Position: -72
Score: 4.9
Sequence: TTGATTTAAATCAA
Locus tag: swp_1991
Name: aer
Funciton: Aerotaxis sensor receptor protein
swp_1991
aer
Aerotaxis sensor receptor protein
Position: -94
Score: 4
Sequence: TTGACTTAGATCAC
Locus tag: swp_3798
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
swp_3798
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -332
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4
Sequence: TTGATGGGGATCTA
Locus tag: swp_1469
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: swp_1470
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: swp_1471
Name: ybgT
Funciton: Cyd operon protein YbgT
swp_1469
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
swp_1470
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
swp_1471
ybgT
Cyd operon protein YbgT
Position: -217
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -174
Score: 4.3
Sequence: TTGACATAGCTCAA
Locus tag: swp_2572
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: swp_2573
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: swp_2574
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: swp_2575
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: swp_2576
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: swp_2577
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: swp_2578
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: swp_2579
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: swp_2580
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
swp_2572
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
swp_2573
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
swp_2574
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
swp_2575
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
swp_2576
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
swp_2577
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
swp_2578
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
swp_2579
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
swp_2580
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -86
Score: 4.9
Sequence: TTGATGTATATCAA
Locus tag: swp_3063
Name: hupE
Funciton: Predicted metal transporter
swp_3063
hupE
Predicted metal transporter
Position: -128
Score: 4.1
Sequence: ATGATCTTGCTCAC
Position: -79
Score: 4.8
Sequence: TTGTTCTGGATCAA
Locus tag: swp_1107
Name: Shew_2655
Funciton: Conserved hypothetical protein
swp_1107
Shew_2655
Conserved hypothetical protein
Position: -134
Score: 4.1
Sequence: GTGATCTTGCTCTA
Locus tag: swp_0428
Name: frdC2
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: swp_0429
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: swp_0430
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: swp_0431
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
swp_0428
frdC2
Fumarate reductase, cytochrome b subunit
swp_0429
frdC1
Fumarate reductase, cytochrome b subunit
swp_0430
frdA
Fumarate reductase, flavoprotein subunit
swp_0431
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -123
Score: 4.6
Sequence: TTGATCTAACGCAA
Locus tag: swp_3958
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
swp_3958
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -71
Score: 4.6
Sequence: TTGATCTAAAACAA
Locus tag: swp_2581
Name: uspE
Funciton: Universal stress protein E
swp_2581
uspE
Universal stress protein E
Position: -108
Score: 4.3
Sequence: GTGATACAGATCAT
Locus tag: swp_4258
Name: gltP
Funciton: Sodium/glutamate symport protein
swp_4258
gltP
Sodium/glutamate symport protein
Position: -35
Score: 5.2
Sequence: TTGATATAGATCAA
Locus tag: swp_1175
Name: bfr2
Funciton: Bacterioferritin
Locus tag: swp_1176
Name: bfr1
Funciton: Bacterioferritin
swp_1175
bfr2
Bacterioferritin
swp_1176
bfr1
Bacterioferritin
Position: -107
Score: 5.6
Sequence: TTGATCTAGATCAA
Locus tag: swp_3395
Name: ompW
Funciton: Outer membrane protein W precursor
swp_3395
ompW
Outer membrane protein W precursor
Position: -118
Score: 5
Sequence: TTGATCTAGTTCAA
Locus tag: swp_5034
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: swp_5033
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: swp_5032
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: swp_5031
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: swp_5030
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: swp_5029
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: swp_5028
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: swp_5027
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
swp_5034
SO4504
Conserved hypothetical protein
swp_5033
SO4505
Predicted formate dehydrogenase associated protein
swp_5032
SO4506
Predicted iron-sulfur cluster-binding protein
swp_5031
SO4507
Predicted formate dehydrogenase-specific chaperone
swp_5030
fdhX
Formate dehydrogenase subunit or accessory protein
swp_5029
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
swp_5028
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
swp_5027
fdhC1
Formate dehydrogenase, gamma subunit
Position: -366
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: swp_4823
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: swp_4824
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: swp_4825
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: swp_4826
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
swp_4823
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
swp_4824
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
swp_4825
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
swp_4826
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -95
Score: 4.7
Sequence: TTGAGATAGATCAT
Locus tag: swp_2388
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
swp_2388
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -376
Score: 4.7
Sequence: TTGATCCACATCAT
Locus tag: swp_1813
Name: lldP
Funciton: L-lactate permease
Locus tag: swp_1812
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
swp_1813
lldP
L-lactate permease
swp_1812
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -233
Score: 4
Sequence: TTAATGTAGCGCAA
Position: -138
Score: 4.1
Sequence: TTGATCTTGGTCGA
Locus tag: swp_4456
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: swp_4457
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: swp_4458
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
swp_4456
napD
Periplasmic nitrate reductase component NapD
swp_4457
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
swp_4458
napB
Nitrate reductase cytochrome c550-type subunit
Position: -128
Score: 4.8
Sequence: CTGATCTAGATCAT
Locus tag: swp_3631
Name: lldP
Funciton: L-lactate permease
Locus tag: swp_3632
Name: lldP
Funciton: L-lactate permease
Locus tag: swp_3633
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
swp_3631
lldP
L-lactate permease
swp_3632
lldP
L-lactate permease
swp_3633
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -106
Score: 4.7
Sequence: GTGATCTTGATCAT
Locus tag: swp_4605
Name: nifS
Funciton: Cysteine desulfurase (EC 2.8.1.7)
swp_4605
nifS
Cysteine desulfurase (EC 2.8.1.7)
Position: -301
Score: 4.9
Sequence: TAGATCTAGATCAA
Position: -131
Score: 5
Sequence: TTGATCTGGATCGA
Locus tag: swp_0240
Name: Sfri_3879
Funciton: Predicted sodium/sulphate symporter
swp_0240
Sfri_3879
Predicted sodium/sulphate symporter
Position: -135
Score: 4.1
Sequence: GTGATCTGATTCAT
Locus tag: swp_4740
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
swp_4740
acnB
Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -80
Score: 4.5
Sequence: ATGAGCTAGCGCAA
Locus tag: swp_0691
Name: Spea_3602
Funciton: Predicted sensor histidine kinase, two-component system
Locus tag: swp_0692
Name: Spea_3601
Funciton: Predicted response regulator, two-component system
Locus tag: swp_0694
Name: Shal_3689
Funciton: Doubled CXXCH motif protein
swp_0691
Spea_3602
Predicted sensor histidine kinase, two-component system
swp_0692
Spea_3601
Predicted response regulator, two-component system
swp_0694
Shal_3689
Doubled CXXCH motif protein
Position: -113
Score: 4.6
Sequence: TCGATCTAGATCAT
Locus tag: swp_0235
Name: oprP
Funciton: Phosphate-specific outer membrane porin
Locus tag: swp_0234
Name: phoX
Funciton: Conserved hypothetical protein
Locus tag: swp_0233
Name: phoU
Funciton: Phosphate transport regulatory protein
swp_0235
oprP
Phosphate-specific outer membrane porin
swp_0234
phoX
Conserved hypothetical protein
swp_0233
phoU
Phosphate transport regulatory protein
Position: -157
Score: 4.7
Sequence: TTGATGTTAATCAA
Locus tag: swp_2784
Name: Sama_1615
Funciton: Predicted exported protein
swp_2784
Sama_1615
Predicted exported protein
Position: -184
Score: 4.4
Sequence: TTGATATAGCTCTA
Locus tag: swp_2949
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: swp_2948
Name: sucB
Funciton: 2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
Locus tag: swp_2947
Name: sucC
Funciton: Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
Locus tag: swp_2946
Name: sucD
Funciton: Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
swp_2949
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
swp_2948
sucB
2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
swp_2947
sucC
Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
swp_2946
sucD
Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
Position: -122
Score: 5.4
Sequence: ATGATCTGGATCAA
Position: -62
Score: 3.8
Sequence: TTGATTTAAAGTAA
Locus tag: swp_3165
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: swp_3164
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
swp_3165
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
swp_3164
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -91
Score: 4.9
Sequence: TTGATCTAGATAAA
Locus tag: swp_3271
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB
Funciton: Ferrous iron transport protein B
swp_3271
feoA
Ferrous iron transport protein A
swp_3270
feoB
Ferrous iron transport protein B
Position: -140
Score: 4.9
Sequence: TTGATATACATCAA
Locus tag: swp_4517
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
swp_4517
SO0579
Predicted serine/threonine protein kinase
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