Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO2356
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 73
- Operons 26
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -153
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: SO2880
Name: ydhD
Funciton: Glutaredoxin-related protein
SO2880
ydhD
Glutaredoxin-related protein
Position: -397
Score: 4.2
Sequence: TTTACCTAGATCAA
Locus tag: SO1782
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: SO1781
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: SO1780
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
SO1782
mtrD
Periplasmic decaheme cytochrome c, MtrD
SO1781
mtrE
Outer membrane protein, MtrE
SO1780
mtrF
Decaheme cytochrome c, MtrF
Position: -158
Score: 4.6
Sequence: TTGATCCAGATCAC
Locus tag: SO1329
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
SO1329
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -91
Score: 4.2
Sequence: GTGATAAGGATCAA
Locus tag: SO4304
Name: hupE
Funciton: Predicted metal transporter
SO4304
hupE
Predicted metal transporter
Position: -184
Score: 4.3
Sequence: CTGTTCTAGATCAA
Locus tag: SO4512
Name: fdhX2
Funciton: Formate dehydrogenase, subunit or accessory protein
Locus tag: SO4513
Name: fdhA2
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: SO4514
Name: fdhB2
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: SO4515
Name: fdhC2
Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
SO4512
fdhX2
Formate dehydrogenase, subunit or accessory protein
SO4513
fdhA2
Formate dehydrogenase, major subunit (EC 1.2.1.2)
SO4514
fdhB2
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
SO4515
fdhC2
Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -105
Score: 4.3
Sequence: TTGATCTAACTCAG
Locus tag: SO0397
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: SO0398
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: SO0399
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
SO0397
frdC1
Fumarate reductase, cytochrome b subunit
SO0398
frdA
Fumarate reductase, flavoprotein subunit
SO0399
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -330
Score: 4.8
Sequence: TTGAAGTGGATCAT
Locus tag: SO4503
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: SO4502
Name: SO4502
Funciton: Conserved hupothetical protein
SO4503
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
SO4502
Conserved hupothetical protein
Position: -122
Score: 5
Sequence: TTGATCTAGCGCAA
Locus tag: SO3980
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
SO3980
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -313
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: SO4606
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: SO4607
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: SO4608
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: SO4609
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
SO4606
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
SO4607
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
SO4608
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
SO4609
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -338
Score: 4.9
Sequence: TTGATTTGAATCAA
Locus tag: SO3286
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: SO3285
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
SO3286
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
SO3285
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Position: -293
Score: 4.3
Sequence: TTGATGTAAATGAA
Position: -106
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: SO1673
Name: ompW
Funciton: Outer membrane protein W precursor
SO1673
ompW
Outer membrane protein W precursor
Position: -170
Score: 4.9
Sequence: TTGCGCTAGATCAA
Locus tag: SO3981
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: SO3982
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
SO3981
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
SO3982
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -171
Score: 4
Sequence: GTGACATAGATCAT
Locus tag: SO0922
Name: gltP
Funciton: Sodium/glutamate symport protein
SO0922
gltP
Sodium/glutamate symport protein
Position: -198
Score: 4.3
Sequence: TTGATCAGGTTCAA
Locus tag: SO4453
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
SO4453
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -43
Score: 5.3
Sequence: TTGATTTAGATCAA
Locus tag: SO1111
Name: bfr2
Funciton: Bacterioferritin
Locus tag: SO1112
Name: bfr1
Funciton: Bacterioferritin
SO1111
bfr2
Bacterioferritin
SO1112
bfr1
Bacterioferritin
Position: -146
Score: 4.2
Sequence: TTGATCCCGATCGA
Locus tag: SO0849
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: SO0848
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: SO0847
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: SO0846
Name: napH
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: SO0845
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
SO0849
napD
Periplasmic nitrate reductase component NapD
SO0848
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
SO0847
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
SO0846
napH
Polyferredoxin NapH (periplasmic nitrate reductase)
SO0845
napB
Nitrate reductase cytochrome c550-type subunit
Position: -212
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -169
Score: 4.2
Sequence: TTGACATGGCTCAA
Position: -106
Score: 4.3
Sequence: TTGACATAGCTCAA
Locus tag: SO2364
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: SO2363
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: SO2362
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: SO2361
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: SO2360
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: SO2359
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: SO2358
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: SO2357
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: SO2356
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
SO2364
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
SO2363
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
SO2362
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
SO2361
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
SO2360
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
SO2359
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
SO2358
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
SO2357
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
SO2356
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -101
Score: 4.8
Sequence: TTGATATGCATCAA
Locus tag: SO2099
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: SO2096
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: SO2095
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: SO2094
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
SO2099
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
SO2098
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
SO2097
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
SO2096
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
SO2095
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
SO2094
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -269
Score: 4
Sequence: TTGATTTTAAGCAT
Position: -121
Score: 5.2
Sequence: ATGATCTGGATCAT
Locus tag: SO2834
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: SO2833
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
SO2834
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
SO2833
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -87
Score: 4.3
Sequence: TTGATCTAGGTAAA
Locus tag: SO1783
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: SO1784
Name: feoB
Funciton: Ferrous iron transport protein B
SO1783
feoA
Ferrous iron transport protein A
SO1784
feoB
Ferrous iron transport protein B
Position: -176
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: SO1522
Name: lldP
Funciton: L-lactate permease
Locus tag: SO1521
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
SO1522
lldP
L-lactate permease
SO1521
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -145
Score: 4.9
Sequence: TTGATATAAATCAA
Locus tag: SO0579
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
SO0579
SO0579
Predicted serine/threonine protein kinase
Position: -185
Score: 4.5
Sequence: TTGAACCTGATCAA
Locus tag: SO4452
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: SO4451
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: SO4450
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: SO4449
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: SO4448
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: SO4447
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: SO4446
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
SO4452
moaA
Molybdenum cofactor biosynthesis protein MoaA
SO4451
moaC
Molybdenum cofactor biosynthesis protein MoaC
SO4450
moaD
Molybdenum cofactor biosynthesis protein D
SO4449
moaE
Molybdenum cofactor biosynthesis protein MoaE
SO4448
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
SO4447
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
SO4446
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -126
Score: 4.2
Sequence: ATGATCCACTTCAA
Locus tag: SO4504
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: SO4505
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: SO4506
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: SO4507
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: SO4508
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: SO4509
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: SO4510
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: SO4511
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
SO4504
SO4504
Conserved hypothetical protein
SO4505
SO4505
Predicted formate dehydrogenase associated protein
SO4506
SO4506
Predicted iron-sulfur cluster-binding protein
SO4507
SO4507
Predicted formate dehydrogenase-specific chaperone
SO4508
fdhX
Formate dehydrogenase subunit or accessory protein
SO4509
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
SO4510
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
SO4511
fdhC1
Formate dehydrogenase, gamma subunit
Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: SO2355
Name: uspE
Funciton: Universal stress protein E
SO2355
uspE
Universal stress protein E
Position: -80
Score: 4.2
Sequence: GTGAACTTAATCAA
Locus tag: SO3404
Name: aer
Funciton: Aerotaxis sensor receptor protein
SO3404
aer
Aerotaxis sensor receptor protein
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