Regulon of Fnr in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_2205
Regulator family:	CRP
Regulation mode:
Biological process:	Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes	96
- Operons	36
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 541 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Oxygen
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -150 Score: 3.9 Sequence: GTGAAGTGTATCAT Locus tag: Shal_2335 Name: ydhD Funciton: Glutaredoxin-related protein
	Shal_2335	ydhD	Glutaredoxin-related protein
Position: -75 Score: 4 Sequence: TTGACTAAGATCAA Locus tag: Shal_0680 Name: Sama_0549 Funciton: Conserved hypothetical protein
	Shal_0680	Sama_0549	Conserved hypothetical protein
Position: -363 Score: 4.2 Sequence: TTTACCTAGATCAA Locus tag: Shal_2778 Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD Locus tag: Shal_2779 Name: mtrE Funciton: Outer membrane protein, MtrE Locus tag: Shal_2780 Name: mtrF Funciton: Decaheme cytochrome c, MtrF
	Shal_2778	mtrD	Periplasmic decaheme cytochrome c, MtrD
	Shal_2779	mtrE	Outer membrane protein, MtrE
	Shal_2780	mtrF	Decaheme cytochrome c, MtrF
Position: -78 Score: 3.9 Sequence: TTGATAGCAATCAA Locus tag: Shal_2428 Name: aer Funciton: Aerotaxis sensor receptor protein
	Shal_2428	aer	Aerotaxis sensor receptor protein
Position: -336 Score: 4.9 Sequence: TTGATTTGAATCAA Position: -51 Score: 4.4 Sequence: TTGATGGGGATCTA Locus tag: Shal_1381 Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) Locus tag: Shal_1382 Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-) Locus tag: Shal_1383 Name: ybgT Funciton: Cyd operon protein YbgT
	Shal_1381	cydA	Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
	Shal_1382	cydB	Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
	Shal_1383	ybgT	Cyd operon protein YbgT
Position: -217 Score: 5.6 Sequence: TTGATCTAGATCAA Position: -174 Score: 4.9 Sequence: TTGATATAGCTCAA Locus tag: Shal_2197 Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) Locus tag: Shal_2198 Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1) Locus tag: Shal_2199 Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1) Locus tag: Shal_2200 Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1) Locus tag: Shal_2201 Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH Locus tag: Shal_2202 Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) Locus tag: Shal_2203 Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion Locus tag: Shal_2204 Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component Locus tag: Shal_2205 Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
	Shal_2197	ccoN	Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
	Shal_2198	ccoO	Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
	Shal_2199	ccoQ	Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
	Shal_2200	ccoP	Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
	Shal_2201	ccoH	Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
	Shal_2202	ccoI	Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
	Shal_2203	ccoS	Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
	Shal_2204	ccoX	Cytochrome c oxidase, cbb3-type, predicted component
	Shal_2205	fnr	Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -184 Score: 4.9 Sequence: ATGATCTAGGTCAA Locus tag: Shal_0176 Name: narK Funciton: Nitrate/nitrite antiporter Locus tag: Shal_0177 Name: narG Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4) Locus tag: Shal_0178 Name: narH Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4) Locus tag: Shal_0179 Name: narJ Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4) Locus tag: Shal_0180 Name: narI Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
	Shal_0176	narK	Nitrate/nitrite antiporter
	Shal_0177	narG	Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
	Shal_0178	narH	Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
	Shal_0179	narJ	Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
	Shal_0180	narI	Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -120 Score: 5 Sequence: TTGATCTAGTTCAA Locus tag: Shal_0100 Name: SO4504 Funciton: Conserved hypothetical protein Locus tag: Shal_0101 Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein Locus tag: Shal_0102 Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein Locus tag: Shal_0103 Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone Locus tag: Shal_0104 Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein Locus tag: Shal_0105 Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Shal_0106 Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Shal_0107 Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit
	Shal_0100	SO4504	Conserved hypothetical protein
	Shal_0101	SO4505	Predicted formate dehydrogenase associated protein
	Shal_0102	SO4506	Predicted iron-sulfur cluster-binding protein
	Shal_0103	SO4507	Predicted formate dehydrogenase-specific chaperone
	Shal_0104	fdhX	Formate dehydrogenase subunit or accessory protein
	Shal_0105	fdhA1	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Shal_0106	fdhB1	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Shal_0107	fdhC1	Formate dehydrogenase, gamma subunit
Position: -134 Score: 3.9 Sequence: GTGATCTACGTCTA Locus tag: Shal_3899 Name: frdC2 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Shal_3898 Name: frdC1 Funciton: Fumarate reductase, cytochrome b subunit Locus tag: Shal_3897 Name: frdA Funciton: Fumarate reductase, flavoprotein subunit Locus tag: Shal_3896 Name: frdB Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
	Shal_3899	frdC2	Fumarate reductase, cytochrome b subunit
	Shal_3898	frdC1	Fumarate reductase, cytochrome b subunit
	Shal_3897	frdA	Fumarate reductase, flavoprotein subunit
	Shal_3896	frdB	Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -199 Score: 3.9 Sequence: CTAATTTAGATCAA Locus tag: Shal_0108 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Shal_0109 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Shal_0110 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Shal_0111 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Shal_0108	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Shal_0109	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Shal_0110	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Shal_0111	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -199 Score: 3.9 Sequence: CAGATTTGGATCAA Locus tag: Shal_0112 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Shal_0113 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Shal_0114 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Shal_0115 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Shal_0112	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Shal_0113	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Shal_0114	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Shal_0115	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -125 Score: 4.6 Sequence: TTGATCTACCGCAA Locus tag: Shal_0886 Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
	Shal_0886	nrfA	Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -130 Score: 4.6 Sequence: TTGCGGTAGATCAA Locus tag: Shal_0885 Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) Locus tag: Shal_0884 Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
	Shal_0885	narQ	Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
	Shal_0884	narP	Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -95 Score: 4 Sequence: TTGACTTAGATCAC Locus tag: Shal_1065 Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1)
	Shal_1065	cyaB	Adenylate cyclase (EC 4.6.1.1)
Position: -79 Score: 4.5 Sequence: TTGTTTTAGATCAA Locus tag: Shal_3305 Name: Shew_2655 Funciton: Conserved hypothetical protein
	Shal_3305	Shew_2655	Conserved hypothetical protein
Position: -73 Score: 4.6 Sequence: TTGATCTAAAACAA Locus tag: Shal_2206 Name: uspE Funciton: Universal stress protein E
	Shal_2206	uspE	Universal stress protein E
Position: -33 Score: 5.2 Sequence: TTGATATAGATCAA Locus tag: Shal_3179 Name: bfr2 Funciton: Bacterioferritin Locus tag: Shal_3178 Name: bfr1 Funciton: Bacterioferritin
	Shal_3179	bfr2	Bacterioferritin
	Shal_3178	bfr1	Bacterioferritin
Position: -107 Score: 4.3 Sequence: GTGATACAGATCAT Locus tag: Shal_0827 Name: gltP Funciton: Sodium/glutamate symport protein
	Shal_0827	gltP	Sodium/glutamate symport protein
Position: -107 Score: 4.4 Sequence: TTGATTCAGGTCAA Locus tag: Shal_2887 Name: ompW Funciton: Outer membrane protein W precursor
	Shal_2887	ompW	Outer membrane protein W precursor
Position: -229 Score: 5.3 Sequence: TTGATCTAGCTCAA Locus tag: Shal_3589 Name: cydD Funciton: Transport ATP-binding protein CydD Locus tag: Shal_3588 Name: cydC Funciton: Transport ATP-binding protein CydC
	Shal_3589	cydD	Transport ATP-binding protein CydD
	Shal_3588	cydC	Transport ATP-binding protein CydC
Position: -209 Score: 4.8 Sequence: TTGACCTAGATCAT Locus tag: Shal_0175 Name: narX Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) Locus tag: Shal_0174 Name: narL Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
	Shal_0175	narX	Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
	Shal_0174	narL	Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -214 Score: 4.9 Sequence: TTGATCTGGATCAC Locus tag: Shal_3083 Name: lldP Funciton: L-lactate permease Locus tag: Shal_3084 Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
	Shal_3083	lldP	L-lactate permease
	Shal_3084	dld	Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -95 Score: 4.7 Sequence: TTGAGTTAGATCAT Locus tag: Shal_1947 Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40)
	Shal_1947	pykA	Pyruvate kinase (EC 2.7.1.40)
Position: -96 Score: 4.7 Sequence: TTGATTTGTATCAA Locus tag: Shal_0300 Name: nrfX Funciton: Nitrite reductase, predicted component Locus tag: Shal_0301 Name: nrfB Funciton: Nitrite reductase, subunit B Locus tag: Shal_0302 Name: nrfC Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit Locus tag: Shal_0303 Name: nrfD Funciton: Nitrite reductase, cytochrome c subunit
	Shal_0300	nrfX	Nitrite reductase, predicted component
	Shal_0301	nrfB	Nitrite reductase, subunit B
	Shal_0302	nrfC	Nitrite reductase, 4Fe-4S ferredoxin subunit
	Shal_0303	nrfD	Nitrite reductase, cytochrome c subunit
Position: -241 Score: 4 Sequence: TTAATGTAGCGCAA Position: -146 Score: 4.1 Sequence: TTGATCTCGGTCTA Locus tag: Shal_0716 Name: napD Funciton: Periplasmic nitrate reductase component NapD Locus tag: Shal_0715 Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Shal_0714 Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG Locus tag: Shal_0713 Name: napH Funciton: Polyferredoxin NapH (periplasmic nitrate reductase) Locus tag: Shal_0712 Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
	Shal_0716	napD	Periplasmic nitrate reductase component NapD
	Shal_0715	napA	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Shal_0714	napG	Periplasmic nitrate reductase, ferredoxin-type protein NapG
	Shal_0713	napH	Polyferredoxin NapH (periplasmic nitrate reductase)
	Shal_0712	napB	Nitrate reductase cytochrome c550-type subunit
Position: -372 Score: 4.9 Sequence: GTGATCTTGATCAA Locus tag: Shal_0258 Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) Locus tag: Shal_0257 Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1) Locus tag: Shal_0256 Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery Locus tag: Shal_0255 Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
	Shal_0258	coxB	Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
	Shal_0257	coxA	Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
	Shal_0256	coxZ	Cytochrome c oxidase biogenesis protein, predicted copper delivery
	Shal_0255	coxC	Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -177 Score: 5.2 Sequence: TTGAACTAGATCAA Locus tag: Shal_0099 Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: Shal_0098 Name: SO4502 Funciton: Conserved hupothetical protein
	Shal_0099	fdhD	Formate dehydrogenase chain D (EC 1.2.1.2)
	Shal_0098	SO4502	Conserved hupothetical protein
Position: -243 Score: 4.3 Sequence: ATAATTTAGATCAA Locus tag: Shal_0482 Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
	Shal_0482	acnB	Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -208 Score: 3.8 Sequence: GTGATCTCCATCAC Position: -148 Score: 5.2 Sequence: ATGATCTAGCTCAA Position: -87 Score: 3.9 Sequence: TTGACGCATATCAA Locus tag: Shal_2261 Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) Locus tag: Shal_2262 Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1) Locus tag: Shal_2263 Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1) Locus tag: Shal_2264 Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1) Locus tag: Shal_2265 Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1) Locus tag: Shal_2266 Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
	Shal_2261	hyaA	Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
	Shal_2262	hyaB	Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
	Shal_2263	hyaC	Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
	Shal_2264	hyaD	Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
	Shal_2265	hyaE	Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
	Shal_2266	hyaF	Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -80 Score: 4.5 Sequence: ATGAGCTAGCGCAA Locus tag: Shal_3691 Name: Spea_3602 Funciton: Predicted sensor histidine kinase, two-component system Locus tag: Shal_3690 Name: Spea_3601 Funciton: Predicted response regulator, two-component system Locus tag: Shal_3689 Name: Shal_3689 Funciton: Doubled CXXCH motif protein
	Shal_3691	Spea_3602	Predicted sensor histidine kinase, two-component system
	Shal_3690	Spea_3601	Predicted response regulator, two-component system
	Shal_3689	Shal_3689	Doubled CXXCH motif protein
Position: -157 Score: 4.1 Sequence: TTGATGTTAACCAA Locus tag: Shal_1843 Name: Sama_1615 Funciton: Predicted exported protein
	Shal_1843	Sama_1615	Predicted exported protein
Position: -202 Score: 4.3 Sequence: TTGTTGTAAATCAA Locus tag: Shal_1352 Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
	Shal_1352	aceB	Malate synthase (EC 2.3.3.9)
Position: -183 Score: 4.4 Sequence: TTGATATAGCTCTA Locus tag: Shal_2489 Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Locus tag: Shal_2488 Name: sucB Funciton: 2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2) Locus tag: Shal_2487 Name: sucC Funciton: Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5) Locus tag: Shal_2486 Name: sucD Funciton: Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
	Shal_2489	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	Shal_2488	sucB	2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
	Shal_2487	sucC	Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
	Shal_2486	sucD	Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
Position: -123 Score: 5.4 Sequence: ATGATCTGGATCAA Locus tag: Shal_2692 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Shal_2691 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Shal_2692	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Shal_2691	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -275 Score: 4.1 Sequence: GTGATCTGTGTCAA Position: -92 Score: 4.3 Sequence: TTGATCTAGGTAAA Locus tag: Shal_2777 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: Shal_2776 Name: feoB Funciton: Ferrous iron transport protein B
	Shal_2777	feoA	Ferrous iron transport protein A
	Shal_2776	feoB	Ferrous iron transport protein B
Position: -123 Score: 4.8 Sequence: TTGATGTGTATCAA Locus tag: Shal_0673 Name: SO0579 Funciton: Predicted serine/threonine protein kinase
	Shal_0673	SO0579	Predicted serine/threonine protein kinase

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Shewanella halifaxensis HAW-EB4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --