Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella baltica OS155

Properties
Regulator type: Transcription factor
TF locus tag: Sbal_2209
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 92
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -75
Score: 4.3
Sequence: TTGATCAAGATCAG
Locus tag: Sbal_3565
Name: Sama_0549
Funciton: Conserved hypothetical protein
Sbal_3565
Sama_0549
Conserved hypothetical protein
Position: -152
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Sbal_1783
Name: ydhD
Funciton: Glutaredoxin-related protein
Sbal_1783
ydhD
Glutaredoxin-related protein
Position: -362
Score: 4.2
Sequence: TTTACCTAGATCAA
Locus tag: Sbal_1593
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Sbal_1592
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Sbal_1591
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
Sbal_1593
mtrD
Periplasmic decaheme cytochrome c, MtrD
Sbal_1592
mtrE
Outer membrane protein, MtrE
Sbal_1591
mtrF
Decaheme cytochrome c, MtrF
Position: -97
Score: 4.6
Sequence: TTGATCCAGATCAC
Locus tag: Sbal_1182
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sbal_1182
cyaB
Adenylate cyclase (EC 4.6.1.1)
Position: -82
Score: 4.4
Sequence: GTGATTGAGATCAA
Locus tag: Sbal_3991
Name: hupE
Funciton: Predicted metal transporter
Sbal_3991
hupE
Predicted metal transporter
Position: -212
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -169
Score: 4.5
Sequence: TTGATATTGCTCAA
Locus tag: Sbal_2201
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sbal_2202
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sbal_2203
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sbal_2204
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sbal_2205
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sbal_2206
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sbal_2207
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sbal_2208
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sbal_2209
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Sbal_2201
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Sbal_2202
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Sbal_2203
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Sbal_2204
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Sbal_2205
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Sbal_2206
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Sbal_2207
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Sbal_2208
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Sbal_2209
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -122
Score: 5
Sequence: TTGATCTAGCGCAA
Locus tag: Sbal_0794
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Sbal_0794
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -183
Score: 5
Sequence: TTGAACTAGATCAT
Locus tag: Sbal_4130
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Sbal_4129
Name: SO4502
Funciton: Conserved hupothetical protein
Sbal_4130
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
Sbal_4129
SO4502
Conserved hupothetical protein
Position: -342
Score: 4.9
Sequence: TTGATTTGCATCAA
Locus tag: Sbal_2979
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sbal_2978
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sbal_2977
Name: ybgT
Funciton: Cyd operon protein YbgT
Sbal_2979
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Sbal_2978
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Sbal_2977
ybgT
Cyd operon protein YbgT
Position: -313
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Sbal_0154
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Sbal_0153
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Sbal_0152
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Sbal_0151
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Sbal_0154
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Sbal_0153
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Sbal_0152
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
Sbal_0151
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: Sbal_2210
Name: uspE
Funciton: Universal stress protein E
Sbal_2210
uspE
Universal stress protein E
Position: -103
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Sbal_1490
Name: ompW
Funciton: Outer membrane protein W precursor
Sbal_1490
ompW
Outer membrane protein W precursor
Position: -117
Score: 4.9
Sequence: TTGCGCTAGATCAA
Locus tag: Sbal_0793
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sbal_0792
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Sbal_0793
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Sbal_0792
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -93
Score: 3.8
Sequence: GTGATCGTGTTCAA
Locus tag: Sbal_0180
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Sbal_0181
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Sbal_0182
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Sbal_0183
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
Sbal_0180
nrfX
Nitrite reductase, predicted component
Sbal_0181
nrfB
Nitrite reductase, subunit B
Sbal_0182
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
Sbal_0183
nrfD
Nitrite reductase, cytochrome c subunit
Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: Sbal_4496
Name: uspE
Funciton: Universal stress protein E
Sbal_4496
uspE
Universal stress protein E
Position: -44
Score: 5.3
Sequence: TTGATTTAGATCAA
Locus tag: Sbal_0932
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Sbal_0933
Name: bfr1
Funciton: Bacterioferritin
Sbal_0932
bfr2
Bacterioferritin
Sbal_0933
bfr1
Bacterioferritin
Position: -146
Score: 4.7
Sequence: TTGATCCGGATCGA
Locus tag: Sbal_3510
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sbal_3511
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sbal_3512
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Sbal_3510
napD
Periplasmic nitrate reductase component NapD
Sbal_3511
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sbal_3512
napB
Nitrate reductase cytochrome c550-type subunit
Position: -212
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -169
Score: 4.5
Sequence: TTGATATTGCTCAA
Locus tag: Sbal_4487
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sbal_4488
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sbal_4489
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sbal_4490
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sbal_4491
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sbal_4492
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sbal_4493
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sbal_4494
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sbal_4495
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Sbal_4487
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Sbal_4488
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Sbal_4489
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Sbal_4490
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Sbal_4491
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Sbal_4492
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Sbal_4493
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Sbal_4494
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
Sbal_4495
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -171
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Sbal_1908
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sbal_1909
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sbal_1910
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sbal_1911
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sbal_1912
Name: napC2
Funciton: Cytochrome c-type protein NapC
Sbal_1908
napE2
Periplasmic nitrate reductase component NapE
Sbal_1909
napD2
Periplasmic nitrate reductase component NapD
Sbal_1910
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Sbal_1911
napB2
Nitrate reductase cytochrome c550-type subunit
Sbal_1912
napC2
Cytochrome c-type protein NapC
Position: -177
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: Sbal_1354
Name: lldP
Funciton: L-lactate permease
Locus tag: Sbal_1353
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Sbal_1354
lldP
L-lactate permease
Sbal_1353
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -68
Score: 4.2
Sequence: TTGATCCAAATTAA
Locus tag: Sbal_1014
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
Sbal_1014
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)
Position: -163
Score: 3.8
Sequence: TAGATCTACGTCAT
Position: -103
Score: 4.9
Sequence: TTGATATACATCAA
Locus tag: Sbal_1889
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sbal_1888
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sbal_1887
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sbal_1886
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sbal_1885
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sbal_1884
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Sbal_1889
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Sbal_1888
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Sbal_1887
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Sbal_1886
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Sbal_1885
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Sbal_1884
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -256
Score: 4.4
Sequence: ATGATTTATATCAT
Locus tag: Sbal_1316
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sbal_1317
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sbal_1316
aceB
Malate synthase (EC 2.3.3.9)
Sbal_1317
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -122
Score: 5.2
Sequence: ATGATCTGGATCAT
Locus tag: Sbal_1665
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sbal_1666
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Sbal_1665
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Sbal_1666
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -272
Score: 4
Sequence: GTGATGTTGATCAC
Position: -87
Score: 4.3
Sequence: TTGATCTAGGTAAA
Locus tag: Sbal_1594
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Sbal_1595
Name: feoB
Funciton: Ferrous iron transport protein B
Sbal_1594
feoA
Ferrous iron transport protein A
Sbal_1595
feoB
Ferrous iron transport protein B
Position: -154
Score: 4.5
Sequence: TTGATGTAAGTCAA
Locus tag: Sbal_0539
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
Sbal_0539
SO0579
Predicted serine/threonine protein kinase
Position: -82
Score: 4
Sequence: GTGAGCTTTATCAA
Locus tag: Sbal_1238
Name: aer
Funciton: Aerotaxis sensor receptor protein
Sbal_1238
aer
Aerotaxis sensor receptor protein
Position: -79
Score: 4.3
Sequence: TTAATCTGGATCTA
Locus tag: Sbal_3749
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Sbal_3750
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Sbal_3751
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Sbal_3749
frdC1
Fumarate reductase, cytochrome b subunit
Sbal_3750
frdA
Fumarate reductase, flavoprotein subunit
Sbal_3751
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -101
Score: 4.6
Sequence: TTGATCTGGCTCAC
Locus tag: Sbal_3936
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Sbal_3935
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Sbal_3934
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Sbal_3936
frdC1
Fumarate reductase, cytochrome b subunit
Sbal_3935
frdA
Fumarate reductase, flavoprotein subunit
Sbal_3934
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
Position: -152
Score: 3.9
Sequence: GTGATCTAGGTTAA
Locus tag: Sbal_0284
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sbal_0285
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sbal_0286
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Sbal_0287
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sbal_0288
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sbal_0289
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sbal_0290
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Sbal_0284
moaA
Molybdenum cofactor biosynthesis protein MoaA
Sbal_0285
moaC
Molybdenum cofactor biosynthesis protein MoaC
Sbal_0286
moaD
Molybdenum cofactor biosynthesis protein D
Sbal_0287
moaE
Molybdenum cofactor biosynthesis protein MoaE
Sbal_0288
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Sbal_0289
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Sbal_0290
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -226
Score: 4.2
Sequence: GTGATCTGCCGCAA
Position: -132
Score: 4.8
Sequence: ATGATCTAGTTCAA
Locus tag: Sbal_4131
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Sbal_4132
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Sbal_4133
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Sbal_4134
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Sbal_4135
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Sbal_4136
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Sbal_4137
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sbal_4138
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
Sbal_4131
SO4504
Conserved hypothetical protein
Sbal_4132
SO4505
Predicted formate dehydrogenase associated protein
Sbal_4133
SO4506
Predicted iron-sulfur cluster-binding protein
Sbal_4134
SO4507
Predicted formate dehydrogenase-specific chaperone
Sbal_4135
fdhX
Formate dehydrogenase subunit or accessory protein
Sbal_4136
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
Sbal_4137
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Sbal_4138
fdhC1
Formate dehydrogenase, gamma subunit
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