Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fnr in Shewanella baltica OS155

Properties
Regulator type: Transcription factor
TF locus tag: Sbal_2209
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Regulog: Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes 92
- Operons 31
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 541 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -75
Score: 4.3
Sequence: TTGATCAAGATCAG
Locus tag: Sbal_3565
Name: Sama_0549
Funciton: Conserved hypothetical protein
Sama_0549
Conserved hypothetical protein

Position: -152
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Sbal_1783
Name: ydhD
Funciton: Glutaredoxin-related protein
ydhD
Glutaredoxin-related protein

Position: -362
Score: 4.2
Sequence: TTTACCTAGATCAA
Locus tag: Sbal_1593
Name: mtrD
Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Sbal_1592
Name: mtrE
Funciton: Outer membrane protein, MtrE
Locus tag: Sbal_1591
Name: mtrF
Funciton: Decaheme cytochrome c, MtrF
mtrD
Periplasmic decaheme cytochrome c, MtrD
mtrE
Outer membrane protein, MtrE
mtrF
Decaheme cytochrome c, MtrF

Position: -97
Score: 4.6
Sequence: TTGATCCAGATCAC
Locus tag: Sbal_1182
Name: cyaB
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaB
Adenylate cyclase (EC 4.6.1.1)

Position: -82
Score: 4.4
Sequence: GTGATTGAGATCAA
Locus tag: Sbal_3991
Name: hupE
Funciton: Predicted metal transporter
hupE
Predicted metal transporter

Position: -212
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -169
Score: 4.5
Sequence: TTGATATTGCTCAA
Locus tag: Sbal_2201
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sbal_2202
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sbal_2203
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sbal_2204
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sbal_2205
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sbal_2206
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sbal_2207
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sbal_2208
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sbal_2209
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family

Position: -122
Score: 5
Sequence: TTGATCTAGCGCAA
Locus tag: Sbal_0794
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
nrfA
Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)

Position: -183
Score: 5
Sequence: TTGAACTAGATCAT
Locus tag: Sbal_4130
Name: fdhD
Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Sbal_4129
Name: SO4502
Funciton: Conserved hupothetical protein
fdhD
Formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
Conserved hupothetical protein

Position: -342
Score: 4.9
Sequence: TTGATTTGCATCAA
Locus tag: Sbal_2979
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sbal_2978
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sbal_2977
Name: ybgT
Funciton: Cyd operon protein YbgT
cydA
Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
cydB
Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
ybgT
Cyd operon protein YbgT

Position: -313
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Sbal_0154
Name: coxB
Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Sbal_0153
Name: coxA
Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Sbal_0152
Name: coxZ
Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Sbal_0151
Name: coxC
Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
coxB
Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
coxA
Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
coxZ
Cytochrome c oxidase biogenesis protein, predicted copper delivery
coxC
Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)

Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: Sbal_2210
Name: uspE
Funciton: Universal stress protein E
uspE
Universal stress protein E

Position: -103
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Sbal_1490
Name: ompW
Funciton: Outer membrane protein W precursor
ompW
Outer membrane protein W precursor

Position: -117
Score: 4.9
Sequence: TTGCGCTAGATCAA
Locus tag: Sbal_0793
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sbal_0792
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein NarP, LuxR family

Position: -93
Score: 3.8
Sequence: GTGATCGTGTTCAA
Locus tag: Sbal_0180
Name: nrfX
Funciton: Nitrite reductase, predicted component
Locus tag: Sbal_0181
Name: nrfB
Funciton: Nitrite reductase, subunit B
Locus tag: Sbal_0182
Name: nrfC
Funciton: Nitrite reductase, 4Fe-4S ferredoxin subunit
Locus tag: Sbal_0183
Name: nrfD
Funciton: Nitrite reductase, cytochrome c subunit
nrfX
Nitrite reductase, predicted component
nrfB
Nitrite reductase, subunit B
nrfC
Nitrite reductase, 4Fe-4S ferredoxin subunit
nrfD
Nitrite reductase, cytochrome c subunit

Position: -72
Score: 4.9
Sequence: TTGATCTAGAACAA
Locus tag: Sbal_4496
Name: uspE
Funciton: Universal stress protein E
uspE
Universal stress protein E

Position: -44
Score: 5.3
Sequence: TTGATTTAGATCAA
Locus tag: Sbal_0932
Name: bfr2
Funciton: Bacterioferritin
Locus tag: Sbal_0933
Name: bfr1
Funciton: Bacterioferritin
bfr2
Bacterioferritin
bfr1
Bacterioferritin

Position: -146
Score: 4.7
Sequence: TTGATCCGGATCGA
Locus tag: Sbal_3510
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sbal_3511
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sbal_3512
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
napD
Periplasmic nitrate reductase component NapD
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB
Nitrate reductase cytochrome c550-type subunit

Position: -212
Score: 5.6
Sequence: TTGATCTAGATCAA
Position: -169
Score: 4.5
Sequence: TTGATATTGCTCAA
Locus tag: Sbal_4487
Name: ccoN
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sbal_4488
Name: ccoO
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sbal_4489
Name: ccoQ
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sbal_4490
Name: ccoP
Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sbal_4491
Name: ccoH
Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sbal_4492
Name: ccoI
Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sbal_4493
Name: ccoS
Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sbal_4494
Name: ccoX
Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sbal_4495
Name: fnr
Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
ccoN
Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
ccoO
Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
ccoQ
Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
ccoP
Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
ccoH
Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
ccoI
Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
ccoS
Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
ccoX
Cytochrome c oxidase, cbb3-type, predicted component
fnr
Anaerobic metabolism transcriptional regulator Fnr, Fnr family

Position: -171
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Sbal_1908
Name: napE2
Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sbal_1909
Name: napD2
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sbal_1910
Name: napA2
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sbal_1911
Name: napB2
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sbal_1912
Name: napC2
Funciton: Cytochrome c-type protein NapC
napE2
Periplasmic nitrate reductase component NapE
napD2
Periplasmic nitrate reductase component NapD
napA2
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
napB2
Nitrate reductase cytochrome c550-type subunit
napC2
Cytochrome c-type protein NapC

Position: -177
Score: 5.3
Sequence: ATGATCTAGATCAT
Locus tag: Sbal_1354
Name: lldP
Funciton: L-lactate permease
Locus tag: Sbal_1353
Name: dld
Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
lldP
L-lactate permease
dld
Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing

Position: -68
Score: 4.2
Sequence: TTGATCCAAATTAA
Locus tag: Sbal_1014
Name: hmp
Funciton: Nitric oxide dioxygenase (EC 1.14.12.17)
hmp
Nitric oxide dioxygenase (EC 1.14.12.17)

Position: -163
Score: 3.8
Sequence: TAGATCTACGTCAT
Position: -103
Score: 4.9
Sequence: TTGATATACATCAA
Locus tag: Sbal_1889
Name: hyaA
Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sbal_1888
Name: hyaB
Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sbal_1887
Name: hyaC
Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sbal_1886
Name: hyaD
Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sbal_1885
Name: hyaE
Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sbal_1884
Name: hyaF
Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
hyaA
Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
hyaB
Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
hyaC
Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
hyaD
Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
hyaE
Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
hyaF
Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)

Position: -256
Score: 4.4
Sequence: ATGATTTATATCAT
Locus tag: Sbal_1316
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sbal_1317
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
aceB
Malate synthase (EC 2.3.3.9)
aceA
Isocitrate lyase (EC 4.1.3.1)

Position: -122
Score: 5.2
Sequence: ATGATCTGGATCAT
Locus tag: Sbal_1665
Name: nrdD
Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sbal_1666
Name: nrdG
Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
nrdD
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)

Position: -272
Score: 4
Sequence: GTGATGTTGATCAC
Position: -87
Score: 4.3
Sequence: TTGATCTAGGTAAA
Locus tag: Sbal_1594
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Sbal_1595
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -154
Score: 4.5
Sequence: TTGATGTAAGTCAA
Locus tag: Sbal_0539
Name: SO0579
Funciton: Predicted serine/threonine protein kinase
SO0579
Predicted serine/threonine protein kinase

Position: -82
Score: 4
Sequence: GTGAGCTTTATCAA
Locus tag: Sbal_1238
Name: aer
Funciton: Aerotaxis sensor receptor protein
aer
Aerotaxis sensor receptor protein

Position: -79
Score: 4.3
Sequence: TTAATCTGGATCTA
Locus tag: Sbal_3749
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Sbal_3750
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Sbal_3751
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
frdC1
Fumarate reductase, cytochrome b subunit
frdA
Fumarate reductase, flavoprotein subunit
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)

Position: -101
Score: 4.6
Sequence: TTGATCTGGCTCAC
Locus tag: Sbal_3936
Name: frdC1
Funciton: Fumarate reductase, cytochrome b subunit
Locus tag: Sbal_3935
Name: frdA
Funciton: Fumarate reductase, flavoprotein subunit
Locus tag: Sbal_3934
Name: frdB
Funciton: Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)
frdC1
Fumarate reductase, cytochrome b subunit
frdA
Fumarate reductase, flavoprotein subunit
frdB
Fumarate reductase, iron-sulfur protein (EC 1.3.99.1)

Position: -152
Score: 3.9
Sequence: GTGATCTAGGTTAA
Locus tag: Sbal_0284
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sbal_0285
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sbal_0286
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Sbal_0287
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sbal_0288
Name: modA
Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sbal_0289
Name: modB
Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sbal_0290
Name: modC
Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
moaA
Molybdenum cofactor biosynthesis protein MoaA
moaC
Molybdenum cofactor biosynthesis protein MoaC
moaD
Molybdenum cofactor biosynthesis protein D
moaE
Molybdenum cofactor biosynthesis protein MoaE
modA
Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC
Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Position: -226
Score: 4.2
Sequence: GTGATCTGCCGCAA
Position: -132
Score: 4.8
Sequence: ATGATCTAGTTCAA
Locus tag: Sbal_4131
Name: SO4504
Funciton: Conserved hypothetical protein
Locus tag: Sbal_4132
Name: SO4505
Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Sbal_4133
Name: SO4506
Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Sbal_4134
Name: SO4507
Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Sbal_4135
Name: fdhX
Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Sbal_4136
Name: fdhA1
Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Sbal_4137
Name: fdhB1
Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sbal_4138
Name: fdhC1
Funciton: Formate dehydrogenase, gamma subunit
SO4504
Conserved hypothetical protein
SO4505
Predicted formate dehydrogenase associated protein
SO4506
Predicted iron-sulfur cluster-binding protein
SO4507
Predicted formate dehydrogenase-specific chaperone
fdhX
Formate dehydrogenase subunit or accessory protein
fdhA1
Formate dehydrogenase, major subunit (EC 1.2.1.2)
fdhB1
Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
fdhC1
Formate dehydrogenase, gamma subunit
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