Regulon of Fnr in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1799 |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Regulog: | Fnr - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 84 |
| - Operons | 28 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Oxygen
- By pathway - Anaerobic metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -169
Score: 4.5 Sequence: GTGATGTGAATCAT
Locus tag: Sama_1919
Name: ydhD Funciton: Glutaredoxin-related protein |
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ydhD
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Glutaredoxin-related protein
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Position: -135
Score: 4.6 Sequence: TTGATTCACATCAA
Position: -75
Score: 4.3 Sequence: TTGATCAAGATCAG
Locus tag: Sama_0549
Name: Sama_0549 Funciton: Conserved hypothetical protein |
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Sama_0549
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Conserved hypothetical protein
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Position: -133
Score: 4.7 Sequence: TTGATCCAGCGCAA
Locus tag: Sama_2679
Name: cydD Funciton: Transport ATP-binding protein CydD
Locus tag: Sama_2678
Name: cydC Funciton: Transport ATP-binding protein CydC |
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cydD
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Transport ATP-binding protein CydD
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cydC
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Transport ATP-binding protein CydC
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Position: -377
Score: 3.8 Sequence: TTAATCTCAATCAT
Locus tag: Sama_1213
Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD
Locus tag: Sama_1212
Name: mtrE Funciton: Outer membrane protein, MtrE
Locus tag: Sama_1211
Name: mtrF Funciton: Decaheme cytochrome c, MtrF |
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mtrD
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Periplasmic decaheme cytochrome c, MtrD
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mtrE
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Outer membrane protein, MtrE
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mtrF
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Decaheme cytochrome c, MtrF
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Position: -109
Score: 4.5 Sequence: ATGATCTGCTTCAA
Locus tag: Sama_0895
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Sama_0896
Name: hcr Funciton: HCP oxidoreductase, NADH-dependent |
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hcp
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Hydroxylamine reductase (EC 1.7.-.-)
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hcr
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HCP oxidoreductase, NADH-dependent
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Position: -98
Score: 4.3 Sequence: TTGATTCAGATCAC
Locus tag: Sama_0861
Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaB
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Adenylate cyclase (EC 4.6.1.1)
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Position: -148
Score: 4 Sequence: CTGCGCCAGATCAA
Locus tag: Sama_3610
Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein
Locus tag: Sama_3609
Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Sama_3608
Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sama_3607
Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2) |
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fdhX2
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Formate dehydrogenase, subunit or accessory protein
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fdhA2
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Formate dehydrogenase, major subunit (EC 1.2.1.2)
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fdhB2
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Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
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fdhC2
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Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
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Position: -182
Score: 4.8 Sequence: TTGAAGTGGATCAT
Locus tag: Sama_3619
Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Sama_3620
Name: SO4502 Funciton: Conserved hupothetical protein |
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fdhD
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Formate dehydrogenase chain D (EC 1.2.1.2)
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SO4502
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Conserved hupothetical protein
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Position: -128
Score: 4.3 Sequence: TTGATCTTGTGCAA
Locus tag: Sama_0648
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) |
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nrfA
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Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
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Position: -314
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: Sama_3483
Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Locus tag: Sama_3484
Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
Locus tag: Sama_3485
Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery
Locus tag: Sama_3486
Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1) |
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coxB
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Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
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coxA
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Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
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coxZ
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Cytochrome c oxidase biogenesis protein, predicted copper delivery
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coxC
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Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
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Position: -334
Score: 4.3 Sequence: TTGATTTACGTCAA
Locus tag: Sama_2349
Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Locus tag: Sama_2348
Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
Locus tag: Sama_2347
Name: ybgT Funciton: Cyd operon protein YbgT |
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cydA
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Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
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cydB
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Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
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ybgT
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Cyd operon protein YbgT
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Position: -133
Score: 5.4 Sequence: ATGATCTGGATCAA
Locus tag: Sama_1620
Name: napE2 Funciton: Periplasmic nitrate reductase component NapE
Locus tag: Sama_1621
Name: napD2 Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Sama_1622
Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Sama_1623
Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Sama_1624
Name: napC2 Funciton: Cytochrome c-type protein NapC |
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napE2
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Periplasmic nitrate reductase component NapE
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napD2
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Periplasmic nitrate reductase component NapD
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napA2
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB2
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Nitrate reductase cytochrome c550-type subunit
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napC2
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Cytochrome c-type protein NapC
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Position: -184
Score: 4.6 Sequence: TTGGTCTGGATCAT
Locus tag: Sama_3523
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -131
Score: 4.2 Sequence: TTGCACAAGATCAA
Locus tag: Sama_0647
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: Sama_0646
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -105
Score: 5.2 Sequence: TTGATTTGGATCAA
Locus tag: Sama_1371
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -218
Score: 5.3 Sequence: TTGATCCAGATCAA
Locus tag: Sama_1791
Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Locus tag: Sama_1792
Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
Locus tag: Sama_1793
Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
Locus tag: Sama_1794
Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
Locus tag: Sama_1795
Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
Locus tag: Sama_1796
Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Sama_1797
Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
Locus tag: Sama_1798
Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component
Locus tag: Sama_1799
Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family |
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ccoN
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Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
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ccoH
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Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
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ccoI
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Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
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ccoX
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Cytochrome c oxidase, cbb3-type, predicted component
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fnr
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Anaerobic metabolism transcriptional regulator Fnr, Fnr family
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Position: -96
Score: 4.7 Sequence: TTGAGATAGATCAT
Locus tag: Sama_1814
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -41
Score: 5.4 Sequence: TTGATGTAGATCAA
Locus tag: Sama_2530
Name: bfr2 Funciton: Bacterioferritin
Locus tag: Sama_2529
Name: bfr1 Funciton: Bacterioferritin |
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bfr2
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Bacterioferritin
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bfr1
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Bacterioferritin
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Position: -83
Score: 4.1 Sequence: TTGATGAGGATCAC
Locus tag: Sama_2599
Name: Sama_2599 Funciton: Predicted lipoprotein |
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Sama_2599
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Predicted lipoprotein
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Position: -165
Score: 4 Sequence: ATGATATAGCTCAG
Locus tag: Sama_1427
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Sama_1428
Name: sucB Funciton: 2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
Locus tag: Sama_1429
Name: sucC Funciton: Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
Locus tag: Sama_1430
Name: sucD Funciton: Succinyl-CoA ligase, alpha chain (EC 6.2.1.5) |
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
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sucC
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Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
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Position: -107
Score: 4.2 Sequence: TTGACGTGTATCAA
Locus tag: Sama_1679
Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
Locus tag: Sama_1676
Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
Locus tag: Sama_1675
Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
Locus tag: Sama_1674
Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1) |
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hyaA
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Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
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hyaB
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Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
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hyaC
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Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
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hyaD
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Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
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hyaE
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Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
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hyaF
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Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
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Position: -114
Score: 4.6 Sequence: ATGATCCATATCAA
Locus tag: Sama_1275
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Sama_1276
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -256
Score: 4.4 Sequence: GTGATCTGGCGCAT
Locus tag: Sama_2981
Name: nqrA1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: Sama_2980
Name: nqrB1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: Sama_2979
Name: nqrC1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: Sama_2978
Name: nqrD1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: Sama_2977
Name: nqrE1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: Sama_2976
Name: nqrF1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-) |
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nqrA1
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Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
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nqrB1
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Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
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nqrC1
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Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
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nqrD1
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Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
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nqrE1
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Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
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nqrF1
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Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
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Position: -132
Score: 4.9 Sequence: ATGATCTGTATCAA
Locus tag: Sama_2439
Name: lldP Funciton: L-lactate permease
Locus tag: Sama_2440
Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
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lldP
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L-lactate permease
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dld
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Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
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Position: -118
Score: 4.9 Sequence: TTGATTTGCATCAA
Locus tag: Sama_0541
Name: SO0579 Funciton: Predicted serine/threonine protein kinase |
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SO0579
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Predicted serine/threonine protein kinase
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Position: -145
Score: 4.6 Sequence: ATGATCCAGACCAA
Locus tag: Sama_3524
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sama_3525
Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: Sama_3526
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sama_3527
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D
Locus tag: Sama_3528
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sama_3529
Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sama_3530
Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
Locus tag: Sama_3531
Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1) |
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moaA
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Molybdenum cofactor biosynthesis protein MoaA
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moaB
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Molybdenum cofactor biosynthesis protein MoaB
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moaC
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Molybdenum cofactor biosynthesis protein MoaC
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moaD
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Molybdenum cofactor biosynthesis protein D
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moaE
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Molybdenum cofactor biosynthesis protein MoaE
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modA
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Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
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modC
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Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
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Position: -74
Score: 4.6 Sequence: TTGATCTAAAACAA
Locus tag: Sama_1800
Name: uspE Funciton: Universal stress protein E |
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uspE
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Universal stress protein E
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Position: -109
Score: 4.2 Sequence: ATGATCCACTTCAA
Locus tag: Sama_3618
Name: SO4504 Funciton: Conserved hypothetical protein
Locus tag: Sama_3617
Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein
Locus tag: Sama_3616
Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein
Locus tag: Sama_3615
Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone
Locus tag: Sama_3614
Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein
Locus tag: Sama_3613
Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2)
Locus tag: Sama_3612
Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sama_3611
Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit |
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SO4504
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Conserved hypothetical protein
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SO4505
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Predicted formate dehydrogenase associated protein
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SO4506
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Predicted iron-sulfur cluster-binding protein
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SO4507
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Predicted formate dehydrogenase-specific chaperone
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fdhX
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Formate dehydrogenase subunit or accessory protein
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fdhA1
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Formate dehydrogenase, major subunit (EC 1.2.1.2)
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fdhB1
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Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
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fdhC1
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Formate dehydrogenase, gamma subunit
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |