Regulon of Fnr in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_1799
Regulator family:	CRP
Regulation mode:
Biological process:	Anaerobic metabolism
Effector:	Oxygen
Regulog:	Fnr - Shewanellaceae
Statistics of regulated genes:
- Genes	84
- Operons	28
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 541 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Oxygen
By pathway - Anaerobic metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -169 Score: 4.5 Sequence: GTGATGTGAATCAT Locus tag: Sama_1919 Name: ydhD Funciton: Glutaredoxin-related protein
	Sama_1919	ydhD	Glutaredoxin-related protein
Position: -135 Score: 4.6 Sequence: TTGATTCACATCAA Position: -75 Score: 4.3 Sequence: TTGATCAAGATCAG Locus tag: Sama_0549 Name: Sama_0549 Funciton: Conserved hypothetical protein
	Sama_0549	Sama_0549	Conserved hypothetical protein
Position: -133 Score: 4.7 Sequence: TTGATCCAGCGCAA Locus tag: Sama_2679 Name: cydD Funciton: Transport ATP-binding protein CydD Locus tag: Sama_2678 Name: cydC Funciton: Transport ATP-binding protein CydC
	Sama_2679	cydD	Transport ATP-binding protein CydD
	Sama_2678	cydC	Transport ATP-binding protein CydC
Position: -377 Score: 3.8 Sequence: TTAATCTCAATCAT Locus tag: Sama_1213 Name: mtrD Funciton: Periplasmic decaheme cytochrome c, MtrD Locus tag: Sama_1212 Name: mtrE Funciton: Outer membrane protein, MtrE Locus tag: Sama_1211 Name: mtrF Funciton: Decaheme cytochrome c, MtrF
	Sama_1213	mtrD	Periplasmic decaheme cytochrome c, MtrD
	Sama_1212	mtrE	Outer membrane protein, MtrE
	Sama_1211	mtrF	Decaheme cytochrome c, MtrF
Position: -109 Score: 4.5 Sequence: ATGATCTGCTTCAA Locus tag: Sama_0895 Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-) Locus tag: Sama_0896 Name: hcr Funciton: HCP oxidoreductase, NADH-dependent
	Sama_0895	hcp	Hydroxylamine reductase (EC 1.7.-.-)
	Sama_0896	hcr	HCP oxidoreductase, NADH-dependent
Position: -98 Score: 4.3 Sequence: TTGATTCAGATCAC Locus tag: Sama_0861 Name: cyaB Funciton: Adenylate cyclase (EC 4.6.1.1)
	Sama_0861	cyaB	Adenylate cyclase (EC 4.6.1.1)
Position: -148 Score: 4 Sequence: CTGCGCCAGATCAA Locus tag: Sama_3610 Name: fdhX2 Funciton: Formate dehydrogenase, subunit or accessory protein Locus tag: Sama_3609 Name: fdhA2 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sama_3608 Name: fdhB2 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sama_3607 Name: fdhC2 Funciton: Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
	Sama_3610	fdhX2	Formate dehydrogenase, subunit or accessory protein
	Sama_3609	fdhA2	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sama_3608	fdhB2	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sama_3607	fdhC2	Formate dehydrogenase, gamma subunit (EC 1.2.1.2)
Position: -182 Score: 4.8 Sequence: TTGAAGTGGATCAT Locus tag: Sama_3619 Name: fdhD Funciton: Formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: Sama_3620 Name: SO4502 Funciton: Conserved hupothetical protein
	Sama_3619	fdhD	Formate dehydrogenase chain D (EC 1.2.1.2)
	Sama_3620	SO4502	Conserved hupothetical protein
Position: -128 Score: 4.3 Sequence: TTGATCTTGTGCAA Locus tag: Sama_0648 Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
	Sama_0648	nrfA	Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Position: -314 Score: 4.9 Sequence: GTGATCTTGATCAA Locus tag: Sama_3483 Name: coxB Funciton: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) Locus tag: Sama_3484 Name: coxA Funciton: Cytochrome c oxidase, polypeptide I (EC 1.9.3.1) Locus tag: Sama_3485 Name: coxZ Funciton: Cytochrome c oxidase biogenesis protein, predicted copper delivery Locus tag: Sama_3486 Name: coxC Funciton: Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
	Sama_3483	coxB	Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
	Sama_3484	coxA	Cytochrome c oxidase, polypeptide I (EC 1.9.3.1)
	Sama_3485	coxZ	Cytochrome c oxidase biogenesis protein, predicted copper delivery
	Sama_3486	coxC	Cytochrome c oxidase, polypeptide III (EC 1.9.3.1)
Position: -334 Score: 4.3 Sequence: TTGATTTACGTCAA Locus tag: Sama_2349 Name: cydA Funciton: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) Locus tag: Sama_2348 Name: cydB Funciton: Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-) Locus tag: Sama_2347 Name: ybgT Funciton: Cyd operon protein YbgT
	Sama_2349	cydA	Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
	Sama_2348	cydB	Cytochrome d ubiquinol oxidase, subunit II (EC 1.10.3.-)
	Sama_2347	ybgT	Cyd operon protein YbgT
Position: -133 Score: 5.4 Sequence: ATGATCTGGATCAA Locus tag: Sama_1620 Name: napE2 Funciton: Periplasmic nitrate reductase component NapE Locus tag: Sama_1621 Name: napD2 Funciton: Periplasmic nitrate reductase component NapD Locus tag: Sama_1622 Name: napA2 Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Locus tag: Sama_1623 Name: napB2 Funciton: Nitrate reductase cytochrome c550-type subunit Locus tag: Sama_1624 Name: napC2 Funciton: Cytochrome c-type protein NapC
	Sama_1620	napE2	Periplasmic nitrate reductase component NapE
	Sama_1621	napD2	Periplasmic nitrate reductase component NapD
	Sama_1622	napA2	Periplasmic nitrate reductase precursor (EC 1.7.99.4)
	Sama_1623	napB2	Nitrate reductase cytochrome c550-type subunit
	Sama_1624	napC2	Cytochrome c-type protein NapC
Position: -184 Score: 4.6 Sequence: TTGGTCTGGATCAT Locus tag: Sama_3523 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	Sama_3523	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -131 Score: 4.2 Sequence: TTGCACAAGATCAA Locus tag: Sama_0647 Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) Locus tag: Sama_0646 Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
	Sama_0647	narQ	Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
	Sama_0646	narP	Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -105 Score: 5.2 Sequence: TTGATTTGGATCAA Locus tag: Sama_1371 Name: ompW Funciton: Outer membrane protein W precursor
	Sama_1371	ompW	Outer membrane protein W precursor
Position: -218 Score: 5.3 Sequence: TTGATCCAGATCAA Locus tag: Sama_1791 Name: ccoN Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) Locus tag: Sama_1792 Name: ccoO Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1) Locus tag: Sama_1793 Name: ccoQ Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1) Locus tag: Sama_1794 Name: ccoP Funciton: Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1) Locus tag: Sama_1795 Name: ccoH Funciton: Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH Locus tag: Sama_1796 Name: ccoI Funciton: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) Locus tag: Sama_1797 Name: ccoS Funciton: Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion Locus tag: Sama_1798 Name: ccoX Funciton: Cytochrome c oxidase, cbb3-type, predicted component Locus tag: Sama_1799 Name: fnr Funciton: Anaerobic metabolism transcriptional regulator Fnr, Fnr family
	Sama_1791	ccoN	Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
	Sama_1792	ccoO	Cytochrome c oxidase, cbb3-type, subunit CcoO (EC 1.9.3.1)
	Sama_1793	ccoQ	Cytochrome c oxidase, cbb3-type, subunit CcoQ (EC 1.9.3.1)
	Sama_1794	ccoP	Cytochrome c oxidase, cbb3-type, subunit CcoP (EC 1.9.3.1)
	Sama_1795	ccoH	Cytochrome c oxidase, cbb3-type, biogenesis protein CcoH
	Sama_1796	ccoI	Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
	Sama_1797	ccoS	Cytochrome c oxidase, maturation protein CcoS, involved in heme b insertion
	Sama_1798	ccoX	Cytochrome c oxidase, cbb3-type, predicted component
	Sama_1799	fnr	Anaerobic metabolism transcriptional regulator Fnr, Fnr family
Position: -96 Score: 4.7 Sequence: TTGAGATAGATCAT Locus tag: Sama_1814 Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40)
	Sama_1814	pykA	Pyruvate kinase (EC 2.7.1.40)
Position: -41 Score: 5.4 Sequence: TTGATGTAGATCAA Locus tag: Sama_2530 Name: bfr2 Funciton: Bacterioferritin Locus tag: Sama_2529 Name: bfr1 Funciton: Bacterioferritin
	Sama_2530	bfr2	Bacterioferritin
	Sama_2529	bfr1	Bacterioferritin
Position: -83 Score: 4.1 Sequence: TTGATGAGGATCAC Locus tag: Sama_2599 Name: Sama_2599 Funciton: Predicted lipoprotein
	Sama_2599	Sama_2599	Predicted lipoprotein
Position: -165 Score: 4 Sequence: ATGATATAGCTCAG Locus tag: Sama_1427 Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Locus tag: Sama_1428 Name: sucB Funciton: 2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2) Locus tag: Sama_1429 Name: sucC Funciton: Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5) Locus tag: Sama_1430 Name: sucD Funciton: Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
	Sama_1427	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	Sama_1428	sucB	2-oxoglutarate dehydrogenase, E2 component (EC 1.2.4.2)
	Sama_1429	sucC	Succinyl-CoA ligase, ADP-forming, beta chain (EC 6.2.1.5)
	Sama_1430	sucD	Succinyl-CoA ligase, alpha chain (EC 6.2.1.5)
Position: -107 Score: 4.2 Sequence: TTGACGTGTATCAA Locus tag: Sama_1679 Name: hyaA Funciton: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) Locus tag: Sama_1678 Name: hyaB Funciton: Ni/Fe-hydrogenase, large chain (EC 1.12.5.1) Locus tag: Sama_1677 Name: hyaC Funciton: Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1) Locus tag: Sama_1676 Name: hyaD Funciton: Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1) Locus tag: Sama_1675 Name: hyaE Funciton: Ni/Fe hydrogenase, predicted component (EC 1.12.5.1) Locus tag: Sama_1674 Name: hyaF Funciton: Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
	Sama_1679	hyaA	Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
	Sama_1678	hyaB	Ni/Fe-hydrogenase, large chain (EC 1.12.5.1)
	Sama_1677	hyaC	Ni/Fe hydrogenase, cytochrome b subunit (EC 1.12.5.1)
	Sama_1676	hyaD	Ni/Fe hydrogenase, maturation protease (EC 1.12.5.1)
	Sama_1675	hyaE	Ni/Fe hydrogenase, predicted component (EC 1.12.5.1)
	Sama_1674	hyaF	Ni/Fe hydrogenase, metallocenter assembly protein (EC 1.12.5.1)
Position: -114 Score: 4.6 Sequence: ATGATCCATATCAA Locus tag: Sama_1275 Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) Locus tag: Sama_1276 Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
	Sama_1275	nrdD	Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
	Sama_1276	nrdG	Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Position: -256 Score: 4.4 Sequence: GTGATCTGGCGCAT Locus tag: Sama_2981 Name: nqrA1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) Locus tag: Sama_2980 Name: nqrB1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-) Locus tag: Sama_2979 Name: nqrC1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-) Locus tag: Sama_2978 Name: nqrD1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-) Locus tag: Sama_2977 Name: nqrE1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-) Locus tag: Sama_2976 Name: nqrF1 Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
	Sama_2981	nqrA1	Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
	Sama_2980	nqrB1	Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
	Sama_2979	nqrC1	Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
	Sama_2978	nqrD1	Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
	Sama_2977	nqrE1	Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
	Sama_2976	nqrF1	Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
Position: -132 Score: 4.9 Sequence: ATGATCTGTATCAA Locus tag: Sama_2439 Name: lldP Funciton: L-lactate permease Locus tag: Sama_2440 Name: dld Funciton: Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
	Sama_2439	lldP	L-lactate permease
	Sama_2440	dld	Predicted lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -118 Score: 4.9 Sequence: TTGATTTGCATCAA Locus tag: Sama_0541 Name: SO0579 Funciton: Predicted serine/threonine protein kinase
	Sama_0541	SO0579	Predicted serine/threonine protein kinase
Position: -145 Score: 4.6 Sequence: ATGATCCAGACCAA Locus tag: Sama_3524 Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA Locus tag: Sama_3525 Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB Locus tag: Sama_3526 Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC Locus tag: Sama_3527 Name: moaD Funciton: Molybdenum cofactor biosynthesis protein D Locus tag: Sama_3528 Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE Locus tag: Sama_3529 Name: modA Funciton: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) Locus tag: Sama_3530 Name: modB Funciton: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1) Locus tag: Sama_3531 Name: modC Funciton: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
	Sama_3524	moaA	Molybdenum cofactor biosynthesis protein MoaA
	Sama_3525	moaB	Molybdenum cofactor biosynthesis protein MoaB
	Sama_3526	moaC	Molybdenum cofactor biosynthesis protein MoaC
	Sama_3527	moaD	Molybdenum cofactor biosynthesis protein D
	Sama_3528	moaE	Molybdenum cofactor biosynthesis protein MoaE
	Sama_3529	modA	Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
	Sama_3530	modB	Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
	Sama_3531	modC	Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)
Position: -74 Score: 4.6 Sequence: TTGATCTAAAACAA Locus tag: Sama_1800 Name: uspE Funciton: Universal stress protein E
	Sama_1800	uspE	Universal stress protein E
Position: -109 Score: 4.2 Sequence: ATGATCCACTTCAA Locus tag: Sama_3618 Name: SO4504 Funciton: Conserved hypothetical protein Locus tag: Sama_3617 Name: SO4505 Funciton: Predicted formate dehydrogenase associated protein Locus tag: Sama_3616 Name: SO4506 Funciton: Predicted iron-sulfur cluster-binding protein Locus tag: Sama_3615 Name: SO4507 Funciton: Predicted formate dehydrogenase-specific chaperone Locus tag: Sama_3614 Name: fdhX Funciton: Formate dehydrogenase subunit or accessory protein Locus tag: Sama_3613 Name: fdhA1 Funciton: Formate dehydrogenase, major subunit (EC 1.2.1.2) Locus tag: Sama_3612 Name: fdhB1 Funciton: Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2) Locus tag: Sama_3611 Name: fdhC1 Funciton: Formate dehydrogenase, gamma subunit
	Sama_3618	SO4504	Conserved hypothetical protein
	Sama_3617	SO4505	Predicted formate dehydrogenase associated protein
	Sama_3616	SO4506	Predicted iron-sulfur cluster-binding protein
	Sama_3615	SO4507	Predicted formate dehydrogenase-specific chaperone
	Sama_3614	fdhX	Formate dehydrogenase subunit or accessory protein
	Sama_3613	fdhA1	Formate dehydrogenase, major subunit (EC 1.2.1.2)
	Sama_3612	fdhB1	Formate dehydrogenase, iron-sulfur subunit (EC 1.2.1.2)
	Sama_3611	fdhC1	Formate dehydrogenase, gamma subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Fnr in Shewanella amazonensis SB2B

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --