Regulon of Crp in Shewanella woodyi ATCC 51908
| Regulator type: | Transcription factor |
| TF locus tag: | Swoo_0662 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 241 |
| - Operons | 130 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -298
Score: 4.3 Sequence: ATTAGTGATATAAGTCAACTAA
Locus tag: Swoo_0663
Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor |
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sel1
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Sel1 domain protein repeat-containing protein precursor
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Position: -82
Score: 3.4 Sequence: TTCTGTGCGCACCTTCATAGAT
Locus tag: Swoo_0395
Name: ygbA Funciton: nitrosative stress induced protein |
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ygbA
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nitrosative stress induced protein
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Position: -192
Score: 3.6 Sequence: TATTGTGAAATCACATATAAAT
Locus tag: Swoo_0296
Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Swoo_0295
Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) |
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purH
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IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
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purD
|
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
|
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Position: -157
Score: 4.2 Sequence: AAATATGATGTTTTGCACTTTA
Position: -96
Score: 4.4 Sequence: AAATATTACCTCGATCACAATA
Locus tag: Swoo_0057
Name: cytcB Funciton: diheme cytochrome c4 |
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cytcB
|
diheme cytochrome c4
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Position: -154
Score: 4.2 Sequence: AACTGTGTTATTCATCACGATT
Locus tag: Swoo_4279
Name: scrA Funciton: aminotransferase class V |
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scrA
|
aminotransferase class V
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Position: -148
Score: 4.3 Sequence: AAACGTGAGACTGCTCACTATT
Locus tag: Swoo_3466
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
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icd
|
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
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Position: -78
Score: 3.9 Sequence: AAACAGGACGTAGATCACACTT
Locus tag: Swoo_0294
Name: SO0439 Funciton: hypothetical protein |
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SO0439
|
hypothetical protein
|
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Position: -268
Score: 4.2 Sequence: TAATCAGACGTGCATCACATTT
Locus tag: Swoo_4104
Name: Swoo_4104 Funciton: choline-glycine betaine transporter |
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Swoo_4104
|
choline-glycine betaine transporter
|
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Position: -173
Score: 3.8 Sequence: TTAGTTGACTTATATCACTAAT
Locus tag: Swoo_0662
Name: crp Funciton: Cyclic AMP receptor protein Crp |
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crp
|
Cyclic AMP receptor protein Crp
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Position: -44
Score: 4.5 Sequence: CATAGTGATCAATATCACATTC
Locus tag: Swoo_4258
Name: rarD Funciton: RarD protein |
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rarD
|
RarD protein
|
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Position: -312
Score: 4.8 Sequence: TTTTGTGAATTGTATCACTTAT
Locus tag: Swoo_3518
Name: SO1247 Funciton: hypothetical protein |
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SO1247
|
hypothetical protein
|
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Position: -111
Score: 4.3 Sequence: ATTTTAGAGATAGCTCACATTT
Locus tag: Swoo_1224
Name: SO1328 Funciton: transcriptional regulator, LysR family |
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SO1328
|
transcriptional regulator, LysR family
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Position: -98
Score: 4.2 Sequence: TTATGTGAACAACAGCTCAAAA
Locus tag: Swoo_4751
Name: Spea_3654 Funciton: histidinol-phosphate aminotransferase (EC 2.6.1.9) |
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Spea_3654
|
histidinol-phosphate aminotransferase (EC 2.6.1.9)
|
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Position: -309
Score: 3.9 Sequence: TTGTGTGATAAGGGTCTTGTTT
Position: -206
Score: 3.9 Sequence: TTATGTGATGAATGATTCATTT
Locus tag: Swoo_1050
Name: SO3588 Funciton: gpr1/fun34/yaaH family protein |
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SO3588
|
gpr1/fun34/yaaH family protein
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Position: -136
Score: 4.4 Sequence: AATTGTGATCTGTGTGGCAATT
Locus tag: Swoo_2709
Name: SO2637 Funciton: hypothetical protein |
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SO2637
|
hypothetical protein
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Position: -157
Score: 4.2 Sequence: AAGTGTGATCTAAATCTAGTTG
Locus tag: Swoo_3548
Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Swoo_3547
Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Swoo_3546
Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
|
thymidine phosphorylase (EC 2.4.2.4)
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deoB
|
phosphopentomutase (EC 5.4.2.7)
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deoD-2
|
purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -66
Score: 4.2 Sequence: TAAAGTGATGAATCTTAAATTT
Locus tag: Swoo_1686
Name: cysD Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: Swoo_1687
Name: cysN Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: Swoo_1688
Name: Shew_1424 Funciton: sulfate permease, Trk-type
Locus tag: Swoo_1689
Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25) |
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cysD
|
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
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cysN
|
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
|
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Shew_1424
|
sulfate permease, Trk-type
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cysC
|
adenylylsulfate kinase (EC 2.7.1.25)
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Position: -179
Score: 4.4 Sequence: AAATGTGAACTCCATCACGCAC
Position: -155
Score: 3.9 Sequence: AATATTGATCTTGATCGACTAA
Locus tag: Swoo_4109
Name: napD Funciton: periplasmic nitrate reductase component NapD
Locus tag: Swoo_4110
Name: napA Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Swoo_4111
Name: napB Funciton: nitrate reductase cytochrome c550-type subunit |
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napD
|
periplasmic nitrate reductase component NapD
|
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napA
|
periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB
|
nitrate reductase cytochrome c550-type subunit
|
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Position: -81
Score: 3.9 Sequence: TTTATTGATCGAGATCAGCTTA
Locus tag: Swoo_4146
Name: Sputcn32_0777 Funciton: hypothetical protein |
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Sputcn32_0777
|
hypothetical protein
|
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Position: -103
Score: 3.7 Sequence: TGTTGTGCTTTAGCACAGAATA
Locus tag: Swoo_3550
Name: tsx Funciton: nucleoside-specific channel-forming protein, Tsx |
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tsx
|
nucleoside-specific channel-forming protein, Tsx
|
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Position: -129
Score: 3.8 Sequence: TACTATGATCTGCTTCTGATTT
Locus tag: Swoo_4166
Name: petA Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Swoo_4165
Name: petB Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Swoo_4164
Name: petC Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Swoo_4163
Name: sspA Funciton: stringent starvation protein A
Locus tag: Swoo_4162
Name: sspB Funciton: stringent starvation protein B |
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petA
|
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
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petB
|
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
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petC
|
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
|
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sspA
|
stringent starvation protein A
|
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sspB
|
stringent starvation protein B
|
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Position: -148
Score: 4.2 Sequence: TTTGATGATCTAGCTCAAAAAA
Locus tag: Swoo_4818
Name: null Funciton: hypothetical protein
Locus tag: Swoo_4817
Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Swoo_4816
Name: SO4506 Funciton: iron-sulfur cluster-binding protein
Locus tag: Swoo_4815
Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Swoo_4814
Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Swoo_4813
Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Swoo_4812
Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Swoo_4811
Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) |
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hypothetical protein
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SO4505
|
hypothetical protein probably related to Formate dehydrogenase function
|
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SO4506
|
iron-sulfur cluster-binding protein
|
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SO4507
|
putative formate dehydrogenase-specific chaperone
|
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SO4508
|
formate dehydrogenase subunit or accessory protein
|
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SO4509
|
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
|
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fdhB-1
|
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
|
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SO4511
|
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
|
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Position: -304
Score: 3.9 Sequence: AAGTGTGATCTAAGCCAAGTTG
Locus tag: Swoo_2702
Name: icd Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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icd
|
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
|
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Position: -240
Score: 4 Sequence: AATCGTGACTTAGATTAGACTT
Locus tag: Swoo_4765
Name: SO0141 Funciton: sensory box/GGDEF family protein |
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SO0141
|
sensory box/GGDEF family protein
|
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Position: -52
Score: 4 Sequence: TACTTTGATATTGAACAAAATA
Locus tag: Swoo_2142
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
|
probable membrane protein YcbW
|
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Position: -110
Score: 4.6 Sequence: ATCTGTGATCGGTTTAACACTA
Locus tag: Swoo_4860
Name: SO0075 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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SO0075
|
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
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Position: -220
Score: 4.1 Sequence: AAACTTGATTTCGCTCAAGTAA
Locus tag: Swoo_2762
Name: Sfri_2271 Funciton: permease of the major facilitator superfamily
Locus tag: Swoo_2761
Name: Sfri_2272 Funciton: hypothetical protein
Locus tag: Swoo_2760
Name: Sfri_2273 Funciton: nitrogen regulatory protein P-II
Locus tag: Swoo_2759
Name: Sfri_2274 Funciton: hypothetical protein |
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Sfri_2271
|
permease of the major facilitator superfamily
|
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Sfri_2272
|
hypothetical protein
|
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Sfri_2273
|
nitrogen regulatory protein P-II
|
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Sfri_2274
|
hypothetical protein
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Position: -345
Score: 3.8 Sequence: AAGTTTTATCTAGTTAACCCTT
Locus tag: Swoo_4423
Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Swoo_4422
Name: mshH Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Swoo_4421
Name: mshI Funciton: MSHA biogenesis protein MshI |
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SO4118
|
NADP-dependent malic enzyme (EC 1.1.1.40)
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mshH
|
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
|
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mshI
|
MSHA biogenesis protein MshI
|
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Position: -100
Score: 3.8 Sequence: AATCGTGACATAGCGCAAAGAC
Locus tag: Swoo_4740
Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
|
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
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Position: -82
Score: 4.3 Sequence: TTGTGTGACCTGCATCACGCCA
Locus tag: Swoo_3763
Name: SO3987 Funciton: hypothetical protein |
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SO3987
|
hypothetical protein
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Position: -48
Score: 5.2 Sequence: AAGTGTGACTTAGATCACACAA
Locus tag: Swoo_3910
Name: Spea_3921 Funciton: hypothetical protein |
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Spea_3921
|
hypothetical protein
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Position: -147
Score: 3.7 Sequence: AACCATGATCTATTTCGTAATT
Locus tag: Swoo_3995
Name: fadD-2 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD-2
|
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
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Position: -95
Score: 4.2 Sequence: TAATGTAATTGGAATATCATAT
Locus tag: Swoo_0968
Name: fkpA Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) |
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fkpA
|
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
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Position: -87
Score: 4.8 Sequence: ATTTGTGATCTAAATCACGCCT
Locus tag: Swoo_1833
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Swoo_1834
Name: SO1927.1 Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Swoo_1835
Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_1836
Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Swoo_1837
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Swoo_1838
Name: sucB Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Swoo_1839
Name: sucC Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Swoo_1840
Name: sucD Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
|
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SO1927.1
|
Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
|
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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sucA
|
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
|
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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sucC
|
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
|
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Position: -176
Score: 3.9 Sequence: AAGAGTGTCCCTCGTCACATTT
Locus tag: Swoo_0714
Name: SO3774 Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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SO3774
|
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Position: -140
Score: 4.1 Sequence: ATTTTTGATGCTAATCAAATGA
Locus tag: Swoo_2219
Name: resA Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: Swoo_2220
Name: SO2101 Funciton: lipoprotein, putative
Locus tag: Swoo_2221
Name: null Funciton: hypothetical protein
Locus tag: Swoo_2222
Name: null Funciton: transposase and inactivated derivative |
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resA
|
C-type cytochrome biogenesis protein ResA (thioredoxin)
|
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SO2101
|
lipoprotein, putative
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hypothetical protein
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transposase and inactivated derivative
|
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Position: -288
Score: 3.7 Sequence: TCCAGCGACTTAGATCACATTT
Locus tag: Swoo_3320
Name: SO3553 Funciton: putative sulfate permease |
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SO3553
|
putative sulfate permease
|
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Position: -154
Score: 4.4 Sequence: AAATGTGAGCAACAACACGTTT
Locus tag: Swoo_0972
Name: nrfA Funciton: cytochrome c552 precursor (EC 1.7.2.2) |
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nrfA
|
cytochrome c552 precursor (EC 1.7.2.2)
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Position: -140
Score: 4.7 Sequence: ATGTGTGATCAAGATCAACATT
Locus tag: Swoo_4060
Name: SO3681 Funciton: universal stress protein family
Locus tag: Swoo_4059
Name: Shewana3_3248 Funciton: UspA domain-containing protein |
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SO3681
|
universal stress protein family
|
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Shewana3_3248
|
UspA domain-containing protein
|
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Position: -243
Score: 3.8 Sequence: TTTTATGACTCTATTAATATAA
Locus tag: Swoo_2563
Name: gloA Funciton: lactoylglutathione lyase (EC 4.4.1.5) |
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gloA
|
lactoylglutathione lyase (EC 4.4.1.5)
|
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Position: -306
Score: 4.8 Sequence: AAATGTGATCTGATTCTAACTT
Locus tag: Swoo_3028
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Swoo_3029
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: Swoo_3030
Name: null Funciton: hypothetical protein
Locus tag: Swoo_3031
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: Swoo_3032
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: Swoo_3033
Name: SO3095 Funciton: hypothetical protein |
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SO3090
|
MoxR-like ATPase in aerotolerance operon
|
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SO3091
|
Conserved hypothetical protein
|
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|
hypothetical protein
|
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SO3093
|
von Willebrand factor type A domain protein
|
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SO3094
|
TPR domain protein in aerotolerance operon
|
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SO3095
|
hypothetical protein
|
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Position: -96
Score: 4.3 Sequence: TCATTTGACTAAGATCACAAAT
Locus tag: Swoo_1225
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaC
|
Adenylate cyclase (EC 4.6.1.1)
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Position: -214
Score: 4.2 Sequence: AAACGCGATCTAAGTCACTTAA
Locus tag: Swoo_1749
Name: SO3120 Funciton: oxidoreductase, Gfo/Idh/MocA family |
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SO3120
|
oxidoreductase, Gfo/Idh/MocA family
|
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Position: -148
Score: 4.4 Sequence: TTAAGTGACTTAGATCGCGTTT
Locus tag: Swoo_1750
Name: null Funciton: hypothetical protein |
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|
hypothetical protein
|
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Position: -139
Score: 4.4 Sequence: GAGTGTGATCTGATTCAAACTT
Locus tag: Swoo_0285
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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acnB
|
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
|
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Position: -78
Score: 3.5 Sequence: TATAGTGAATTCAATCACTGCT
Locus tag: Swoo_0441
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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ilvC
|
Ketol-acid reductoisomerase (EC 1.1.1.86)
|
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|
Position: -256
Score: 3.8 Sequence: CAATTTGATATGCTTCCAAAAA
Position: -144
Score: 3.9 Sequence: TACTTTGATTAAAGTCATAAAA
Locus tag: Swoo_4658
Name: scyA Funciton: cytochrome c-type protein |
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scyA
|
cytochrome c-type protein
|
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|
Position: -311
Score: 4.5 Sequence: TTTTGTGATGTAGGTCTACATT
Locus tag: Swoo_1001
Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon |
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argR
|
arginine pathway regulatory protein ArgR, repressor of arg regulon
|
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|
Position: -204
Score: 3.8 Sequence: TTTTGTGAGATCGGTCGGAAAG
Locus tag: Swoo_1565
Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Swoo_1566
Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB |
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cydA
|
cytochrome d ubiquinol oxidase, subunit I, CydA
|
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|
cydB
|
cytochrome d ubiquinol oxidase, subunit II, CydB
|
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|
Position: -123
Score: 4.3 Sequence: AATTGTGATATAGGTAAGAGTA
Locus tag: Swoo_0793
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Swoo_0794
Name: SO3719 Funciton: hypothetical protein |
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|
hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
|
||
|
SO3719
|
hypothetical protein
|
||
|
Position: -127
Score: 3.9 Sequence: ATTCATGATCCTCTTCACGCAG
Locus tag: Swoo_4512
Name: Sputcn32_0539 Funciton: mechanosensitive ion channel |
|||
|
Sputcn32_0539
|
mechanosensitive ion channel
|
||
|
Position: -112
Score: 4.8 Sequence: AAACGTGTTGTTGCTCACATTT
Locus tag: Swoo_0971
Name: narQ Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Swoo_0970
Name: narP Funciton: Nitrate/nitrite response regulator protein |
|||
|
narQ
|
Nitrate/nitrite sensor protein (EC 2.7.3.-)
|
||
|
narP
|
Nitrate/nitrite response regulator protein
|
||
|
Position: -272
Score: 4.9 Sequence: AAATGTGATGTGGGTCAACAAA
Position: -92
Score: 4.7 Sequence: AAGTGTGATCAAGTTAACCTTA
Locus tag: Swoo_4509
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -184
Score: 4 Sequence: AAACATGACTCGCTTAACAAAA
Locus tag: Swoo_4806
Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
|||
|
SO4520
|
Oxygen-independent coproporphyrinogen III oxidase, putative
|
||
|
Position: -155
Score: 4 Sequence: TTTAGTGCTGTTATTTACACTT
Locus tag: Swoo_2742
Name: SO2757 Funciton: Histidine permease YuiF |
|||
|
SO2757
|
Histidine permease YuiF
|
||
|
Position: -229
Score: 3.8 Sequence: AAATATGAGTTCTATTGCAAAT
Locus tag: Swoo_1222
Name: SO1326 Funciton: COG1242: Predicted Fe-S oxidoreductase |
|||
|
SO1326
|
COG1242: Predicted Fe-S oxidoreductase
|
||
|
Position: -272
Score: 4.7 Sequence: AATCGTGACTTATATCACTTAA
Position: -157
Score: 4.2 Sequence: AGTTGGGACTTTTGTCACATAA
Locus tag: Swoo_3123
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: Swoo_3122
Name: feoB Funciton: Ferrous iron transport protein B |
|||
|
feoA
|
Ferrous iron transport protein A
|
||
|
feoB
|
Ferrous iron transport protein B
|
||
|
Position: -73
Score: 4.8 Sequence: AATTGTGATATCGATCAATATA
Locus tag: Swoo_2604
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE2
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -190
Score: 4.8 Sequence: TATATTGATCGATATCACAATT
Locus tag: Swoo_2603
Name: SO2535 Funciton: Predicted glutamine amidotransferase |
|||
|
SO2535
|
Predicted glutamine amidotransferase
|
||
|
Position: -157
Score: 4.2 Sequence: AAATATGATGTTTTGCACTTTA
Position: -96
Score: 4.4 Sequence: AAATATTACCTCGATCACAATA
Locus tag: Swoo_0057
Name: cytcB Funciton: Cytochrome c4 |
|||
|
cytcB
|
Cytochrome c4
|
||
|
Position: -9
Score: 4.2 Sequence: ATTTTTGACATGTATCACCTCA
Locus tag: Swoo_0591
Name: SO4154 Funciton: transcriptional regulator, LysR family |
|||
|
SO4154
|
transcriptional regulator, LysR family
|
||
|
Position: -159
Score: 4.4 Sequence: AATAGTGAGCAGTCTCACGTTT
Locus tag: Swoo_3465
Name: SO1539 Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1) |
|||
|
SO1539
|
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
|
||
|
Position: -110
Score: 4.8 Sequence: TATTGTGATCGAGGTAATATTT
Locus tag: Swoo_0058
Name: engB Funciton: GTP-binding protein EngB |
|||
|
engB
|
GTP-binding protein EngB
|
||
|
Position: -153
Score: 4.3 Sequence: TACTTTGACCCAGCTCAAAAAA
Position: -78
Score: 3.9 Sequence: AAGCGTTATCATTTACACATTA
Locus tag: Swoo_0123
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -229
Score: 4.6 Sequence: AAATGAGACCAAGATCACACTT
Locus tag: Swoo_0483
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Swoo_0482
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Swoo_0481
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: Swoo_0480
Name: hemY Funciton: HemY domain-containing protein |
|||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemX
|
Homolog of E. coli HemX protein
|
||
|
hemY
|
HemY domain-containing protein
|
||
|
Position: -233
Score: 4.5 Sequence: TTTTTTGAACCACATCACAAAC
Locus tag: Swoo_0506
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Swoo_0505
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Swoo_0504
Name: fis Funciton: DNA-binding protein Fis |
|||
|
prmA
|
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
|
||
|
nifR3
|
tRNA dihydrouridine synthase B (EC 1.-.-.-)
|
||
|
fis
|
DNA-binding protein Fis
|
||
|
Position: -259
Score: 3.7 Sequence: TAGTGTGATCTAGGTTGGGTAA
Locus tag: Swoo_2736
Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26) |
|||
|
SO2753
|
prolyl endopeptidase (EC 3.4.21.26)
|
||
|
Position: -196
Score: 4.2 Sequence: AACTGAGAGGTGGATCACATTG
Locus tag: Swoo_0863
Name: SO0919 Funciton: Serine transporter, putative
Locus tag: Swoo_0864
Name: Sfri_0687 Funciton: L-serine dehydratase (EC 4.3.1.17) |
|||
|
SO0919
|
Serine transporter, putative
|
||
|
Sfri_0687
|
L-serine dehydratase (EC 4.3.1.17)
|
||
|
Position: -74
Score: 5.1 Sequence: AAGTGTGATCTAGCTTACAATT
Locus tag: Swoo_3714
Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Swoo_3715
Name: lipA Funciton: Lipoate synthase |
|||
|
lipB
|
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
|
||
|
lipA
|
Lipoate synthase
|
||
|
Position: -82
Score: 3.9 Sequence: AAATGGGAGAAAGATCCCATTA
Locus tag: Swoo_2048
Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5) |
|||
|
cdd
|
cytidine deaminase (EC 3.5.4.5)
|
||
|
Position: -163
Score: 4.3 Sequence: TTTTTTGAGCTAGATCATCAAA
Locus tag: Swoo_4819
Name: SO4503 Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Swoo_4820
Name: SO4502 Funciton: conserved domain protein |
|||
|
SO4503
|
formate dehydrogenase chain D (EC 1.2.1.2)
|
||
|
SO4502
|
conserved domain protein
|
||
|
Position: -290
Score: 5.1 Sequence: CTTTGTGATATCAATCACAATA
Locus tag: Swoo_4150
Name: SO3895 Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL |
|||
|
SO3895
|
HesA/MoeB/ThiF family protein related to EC-YgdL
|
||
|
Position: -321
Score: 4.9 Sequence: TTCTGTGACCTGTGTCACAAAA
Locus tag: Swoo_2565
Name: null Funciton: TonB-dependent receptor |
|||
|
TonB-dependent receptor
|
|||
|
Position: -288
Score: 3.7 Sequence: TCCAGCGACTTAGATCACATTT
Locus tag: Swoo_3320
Name: SO3553 Funciton: putative sulfate permease
Locus tag: Swoo_3321
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Swoo_3322
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) |
|||
|
SO3553
|
putative sulfate permease
|
||
|
purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
||
|
purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
||
|
Position: -232
Score: 4.2 Sequence: AATGGTGAGCTGGATCATGTTA
Position: -145
Score: 4.5 Sequence: CAATGTGATCCTCTTCGCAAAC
Locus tag: Swoo_0885
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: Swoo_0886
Name: SO0941 Funciton: hypothetical protein |
|||
|
cadC
|
transcriptional regulator-related protein
|
||
|
SO0941
|
hypothetical protein
|
||
|
Position: -153
Score: 5.1 Sequence: TTATGTGATGATGTTCAAAATT
Locus tag: Swoo_2110
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
fadD1
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -149
Score: 4.1 Sequence: TTTATTGATCTAGCTCAATTTT
Position: -130
Score: 4.7 Sequence: TTTTGTGAATCTCTTAACATTT
Locus tag: Swoo_0710
Name: cydD Funciton: Transport ATP-binding protein CydD
Locus tag: Swoo_0711
Name: cydC Funciton: Transport ATP-binding protein CydC |
|||
|
cydD
|
Transport ATP-binding protein CydD
|
||
|
cydC
|
Transport ATP-binding protein CydC
|
||
|
Position: -81
Score: 4.6 Sequence: TATTGTGAAAGTCATCACACAG
Locus tag: Swoo_1771
Name: SO2806 Funciton: hypothetical protein |
|||
|
SO2806
|
hypothetical protein
|
||
|
Position: -82
Score: 4.2 Sequence: CAAGGTGATTTATCTCACACAG
Locus tag: Swoo_2030
Name: SO2589 Funciton: isopenicillin N synthase |
|||
|
SO2589
|
isopenicillin N synthase
|
||
|
Position: -172
Score: 4.2 Sequence: TTTTTTGAGCTGGGTCAAAGTA
Locus tag: Swoo_0124
Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70) |
|||
|
prlC
|
Oligopeptidase A (EC 3.4.24.70)
|
||
|
Position: -86
Score: 4.4 Sequence: GTATATGACCCAGTTCACATTT
Locus tag: Swoo_3036
Name: putP Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter |
|||
|
putP
|
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
|
||
|
Position: -215
Score: 3.8 Sequence: AATTGCTAGATAGATCTCACTT
Locus tag: Swoo_4355
Name: SO0543 Funciton: hypothetical protein |
|||
|
SO0543
|
hypothetical protein
|
||
|
Position: -98
Score: 5 Sequence: AAGTGTGATCTTGGTCTCATTT
Locus tag: Swoo_0484
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -234
Score: 4.9 Sequence: AGTCGTGATCTTGATCACGTTT
Locus tag: Swoo_1265
Name: SO3421 Funciton: b-type cytochrome, putative |
|||
|
SO3421
|
b-type cytochrome, putative
|
||
|
Position: -201
Score: 4.1 Sequence: AAGTGTGATCCAACTTGTATTT
Locus tag: Swoo_4839
Name: hutC Funciton: histidine utilization repressor
Locus tag: Swoo_4838
Name: hutU Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Swoo_4837
Name: hutH Funciton: histidine ammonia-lyase (EC 4.3.1.3) |
|||
|
hutC
|
histidine utilization repressor
|
||
|
hutU
|
urocanate hydratase (EC 4.2.1.49)
|
||
|
hutH
|
histidine ammonia-lyase (EC 4.3.1.3)
|
||
|
Position: -138
Score: 4.1 Sequence: AAGTTAGAATCAGATCACATTT
Locus tag: Swoo_3027
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Swoo_3026
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|||
|
fadI
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
|
||
|
fadJ
|
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
Position: -48
Score: 4.1 Sequence: TAAATTGATCTAGATCAATAAA
Locus tag: Swoo_1790
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -74
Score: 4.7 Sequence: AAGTGTGAAGTGGTTAACAAAA
Locus tag: Swoo_1715
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Swoo_1716
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
|||
|
phhA
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
|
||
|
phhB
|
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
|
||
|
Position: -220
Score: 4.3 Sequence: TAGCTTGATCTAGATCAACTTT
Position: -177
Score: 4.4 Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: Swoo_2425
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Swoo_2424
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Swoo_2423
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Swoo_2422
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
|||
|
ccoN
|
Cbb3-type cytochrome c oxidase, subunit I, CcoN
|
||
|
ccoO
|
Cbb3-type cytochrome c oxidase, subunit II, CcoO
|
||
|
ccoQ
|
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
|
||
|
ccoP
|
Cbb3-type cytochrome c oxidase, subunit III, CcoP
|
||
|
Position: -172
Score: 4.3 Sequence: ATATGTGCTGCTGATCTTATTT
Locus tag: Swoo_0655
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Swoo_0656
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Swoo_0657
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Swoo_0658
Name: SO0620 Funciton: FIG008480: hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
FIG008480: hypothetical protein
|
||
|
Position: -125
Score: 4.2 Sequence: GAATTTGATCTGTCTCAAACTT
Locus tag: Swoo_1260
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Swoo_1261
Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|||
|
hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
|
||
|
hcr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
Position: -337
Score: 3.7 Sequence: GTTTGCGAAGAGGATCACATTG
Position: -250
Score: 4.5 Sequence: TAACATGATCCAGCTCACCATT
Locus tag: Swoo_0884
Name: SO0939 Funciton: split-soret diheme cytochrome c
Locus tag: Swoo_0883
Name: null Funciton: hypothetical protein |
|||
|
SO0939
|
split-soret diheme cytochrome c
|
||
|
hypothetical protein
|
|||
|
Position: -116
Score: 4.5 Sequence: ATGTGTGATCTAAGTATCAATT
Locus tag: Swoo_1933
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
|||
|
hmgR
|
Tyrosine degradation transcriptional regulator, LysR family
|
||
|
Position: -211
Score: 4.3 Sequence: AATTATGACGTCGCTCACTAAA
Position: -158
Score: 4.5 Sequence: AAGTGTGAGTTCGATCAAGTAT
Position: -108
Score: 3.9 Sequence: TTTATTGATTTGGATCAATAAA
Locus tag: Swoo_3207
Name: ompW Funciton: outer membrane protein W precursor |
|||
|
ompW
|
outer membrane protein W precursor
|
||
|
Position: -116
Score: 3.7 Sequence: ATATGAGCGCTAAATCACGCTT
Locus tag: Swoo_0881
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: Swoo_0882
Name: null Funciton: hypothetical protein |
|||
|
cadC
|
transcriptional regulator-related protein
|
||
|
hypothetical protein
|
|||
|
Position: -310
Score: 4.2 Sequence: AGTTGTTAACTGGATCTCAAAT
Locus tag: Swoo_2882
Name: Spea_1673 Funciton: hypothetical protein |
|||
|
Spea_1673
|
hypothetical protein
|
||
|
Position: -109
Score: 4.7 Sequence: TGATTTGATCTGTCTCACAGTA
Position: -79
Score: 4 Sequence: ATTTGTGAGCGACATTATCTAA
Locus tag: Swoo_0508
Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Swoo_0509
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_0510
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
fdrC2
|
Fumarate reductase cytochrome b subunit
|
||
|
frdA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -138
Score: 4.8 Sequence: GTTTGTGATGTGGTTCAAAAAA
Locus tag: Swoo_0507
Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit |
|||
|
frdC1
|
Fumarate reductase cytochrome b subunit
|
||
|
Position: -76
Score: 4.5 Sequence: AAACGTGATCAAGATCACGACT
Locus tag: Swoo_1264
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
|||
|
yfiA-2
|
Ribosome hibernation protein YfiA
|
||
|
Position: -133
Score: 5 Sequence: TATTGTGATTTGTGTCACGCTA
Locus tag: Swoo_1718
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Swoo_1719
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|||
|
fahA
|
Fumarylacetoacetate hydrolase family protein
|
||
|
maiA
|
Maleylacetoacetate isomerase (EC 5.2.1.2)
|
||
|
Position: -106
Score: 3.9 Sequence: TTTGTTGATCTTAATCAAAAAC
Locus tag: Swoo_3788
Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein
Locus tag: Swoo_3789
Name: Sfri_4034 Funciton: FMN-binding domain-containing protein
Locus tag: Swoo_3790
Name: Sfri_4033 Funciton: PepSY-associated TM helix domain-containing protein |
|||
|
Sfri_4035
|
Conserved hypothetical signal peptide protein
|
||
|
Sfri_4034
|
FMN-binding domain-containing protein
|
||
|
Sfri_4033
|
PepSY-associated TM helix domain-containing protein
|
||
|
Position: -241
Score: 3.3 Sequence: AATTATTAACTCTTTCTTAAAT
Locus tag: Swoo_4152
Name: omp35 Funciton: outer membrane porin |
|||
|
omp35
|
outer membrane porin
|
||
|
Position: -91
Score: 3.8 Sequence: CTTTTTGATCTTTATCTAGTTT
Locus tag: Swoo_4894
Name: SO4743 Funciton: ferrichrome-iron receptor
Locus tag: Swoo_4893
Name: deoR Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: Swoo_4892
Name: glmS Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
|||
|
SO4743
|
ferrichrome-iron receptor
|
||
|
deoR
|
transcriptional regulator of glmS gene, DeoR family
|
||
|
glmS
|
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
|
||
|
Position: -67
Score: 3.7 Sequence: TATTTTTACTTGCCTCAACTAA
Locus tag: Swoo_0917
Name: Sputcn32_0834 Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Swoo_0916
Name: asnC Funciton: regulatory protein AsnC |
|||
|
Sputcn32_0834
|
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
|
||
|
asnC
|
regulatory protein AsnC
|
||
|
Position: -91
Score: 3.8 Sequence: AAGTGTTATAAACATCATTTTA
Locus tag: Swoo_4247
Name: SO3967 Funciton: Molybdenum-binding periplasmic protein |
|||
|
SO3967
|
Molybdenum-binding periplasmic protein
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Position: -185
Score: 4 Sequence: TTCAGTGATGTAGAACTCAAAA
Locus tag: Swoo_2973
Name: swp_4302 Funciton: hypothetical protein |
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swp_4302
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hypothetical protein
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Position: -214
Score: 4.5 Sequence: ATTTGTGAATGTACTCATATAT
Locus tag: Swoo_3236
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Swoo_3235
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
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electron transfer flavoprotein, alpha subunit
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Position: -215
Score: 4.2 Sequence: AAGTGTGATCGTGATCACGCGA
Locus tag: Swoo_1283
Name: SO3541 Funciton: sodium:alanine symporter family protein |
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SO3541
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sodium:alanine symporter family protein
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Position: -127
Score: 3.9 Sequence: ATTCATGATCCTCTTCACGCAG
Locus tag: Swoo_4512
Name: kefA Funciton: mechanosensitive ion channel |
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kefA
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mechanosensitive ion channel
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Position: -228
Score: 4 Sequence: AAATGAAACATCTATCACACAT
Locus tag: Swoo_1424
Name: SO1603 Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: Swoo_1423
Name: SO1602 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: Swoo_1422
Name: Sputcn32_1325 Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: Swoo_1421
Name: SO1599 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC |
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SO1603
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putative transcriptional regulator, inferred for PFA pathway
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SO1602
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omega-3 polyunsaturated fatty acid synthase subunit, PfaA
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Sputcn32_1325
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omega-3 polyunsaturated fatty acid synthase PfaB
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SO1599
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omega-3 polyunsaturated fatty acid synthase subunit, PfaC
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Position: -149
Score: 4.3 Sequence: AAGTTTGATCTAGTCCACAATC
Locus tag: Swoo_4151
Name: omp35 Funciton: outer membrane porin |
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omp35
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outer membrane porin
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Position: -92
Score: 4 Sequence: TAACTTGATTTGAATCAATATT
Locus tag: Swoo_0239
Name: null Funciton: hypothetical protein
Locus tag: Swoo_0240
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Swoo_0241
Name: nrfC Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Swoo_0242
Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD |
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hypothetical protein
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nrfB
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Cytochrome c-type protein NrfB precursor
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nrfC
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4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
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nrfD-2
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nitrite reductase, quinol dehydrogenase component, NrfD
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Position: -160
Score: 4 Sequence: AAGTGTGCTTTAGCGCAGATTT
Locus tag: Swoo_4456
Name: mccA Funciton: cytochrome c, putative |
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mccA
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cytochrome c, putative
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Position: -342
Score: 4.2 Sequence: TTTTGTGACCTCTCTATCCTTT
Position: -87
Score: 3.9 Sequence: AATTGTTAAGTTGTTCAGCTAA
Locus tag: Swoo_4477
Name: mccA Funciton: cytochrome c, putative |
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mccA
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cytochrome c, putative
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Position: -296
Score: 4.2 Sequence: AAGTTTGAATCAGATCACACTC
Locus tag: Swoo_0284
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
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2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -224
Score: 4.2 Sequence: TTTTATGACTTTAATCAAAGTA
Locus tag: Swoo_4659
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Swoo_4660
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Swoo_4661
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Swoo_4662
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Swoo_4663
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
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ccmA
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ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
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ccmB
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ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
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ccmD
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cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
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ccmE
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cytochrome c-type biogenesis protein CcmE, heme chaperone
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Position: -111
Score: 4.7 Sequence: AGAAGTGATGTAGAACACATAA
Locus tag: Swoo_0327
Name: ppc Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Swoo_0326
Name: yceB Funciton: uncharacterized lipoprotein YceB precursor |
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ppc
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phosphoenolpyruvate carboxylase (EC 4.1.1.31)
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yceB
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uncharacterized lipoprotein YceB precursor
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Position: -92
Score: 3.8 Sequence: ATATGATATTCCAATTACATTA
Locus tag: Swoo_0967
Name: SO1064 Funciton: FOG: WD40 repeat
Locus tag: Swoo_0966
Name: slyX Funciton: protein SlyX
Locus tag: Swoo_0965
Name: SO1061 Funciton: TPR domain protein
Locus tag: Swoo_0964
Name: spaP Funciton: Putative lipoprotein |
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SO1064
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FOG: WD40 repeat
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slyX
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protein SlyX
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SO1061
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TPR domain protein
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spaP
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Putative lipoprotein
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Position: -288
Score: 3.7 Sequence: ATGAGTTACAACTTTCACACAT
Locus tag: Swoo_3125
Name: mtrC Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Swoo_3126
Name: mtrA Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Swoo_3127
Name: mtrB Funciton: outer membrane protein, MtrB |
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mtrC
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surface localized decaheme cytochrome c lipoprotein, MtrC
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mtrA
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periplasmic decaheme cytochrome c, MtrA
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mtrB
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outer membrane protein, MtrB
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Position: -238
Score: 4.4 Sequence: TCGCGTGATCACGATCACACTT
Position: -97
Score: 3.8 Sequence: AAACAAGATATAGAACACATTT
Locus tag: Swoo_1282
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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phk
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Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
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Position: -152
Score: 4.3 Sequence: AATTTTTATATTTATCAAAATA
Locus tag: Swoo_0195
Name: cymA Funciton: membrane anchored tetraheme cytochrome c, CymA |
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cymA
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membrane anchored tetraheme cytochrome c, CymA
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Position: -222
Score: 4.3 Sequence: GAATGTGAGTGTCGTCACAAAA
Locus tag: Swoo_4793
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Swoo_4792
Name: moaB Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Swoo_4791
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Swoo_4790
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Swoo_4789
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Swoo_4788
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Swoo_4787
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Swoo_4786
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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moaA
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molybdenum cofactor biosynthesis protein MoaA
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moaB
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molybdenum cofactor biosynthesis protein MoaB
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moaC
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molybdenum cofactor biosynthesis protein MoaC
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moaD
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molybdenum cofactor biosynthesis protein MoaD
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moaE
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molybdenum cofactor biosynthesis protein MoaE
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modA
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molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
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molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
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modC
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molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
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Position: -47
Score: 3.8 Sequence: AATGTAGACCTACATCACAAAA
Locus tag: Swoo_1002
Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37) |
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mdh
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malate dehydrogenase (EC 1.1.1.37)
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Position: -141
Score: 4.1 Sequence: ATATGAGATGCAGCTCTCATCT
Locus tag: Swoo_3307
Name: SO3406 Funciton: FIG024006: iron uptake protein
Locus tag: Swoo_3308
Name: SO3407 Funciton: FIG138928: iron-regulated membrane protein
Locus tag: Swoo_3309
Name: SO3408 Funciton: FIG016502: iron uptake protein |
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SO3406
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FIG024006: iron uptake protein
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SO3407
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FIG138928: iron-regulated membrane protein
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SO3408
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FIG016502: iron uptake protein
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Position: -66
Score: 4.2 Sequence: CCTTGTGACTTCGCTCACCTTT
Locus tag: Swoo_2168
Name: SO2871 Funciton: arsenate reductase (EC 1.20.4.1)
Locus tag: Swoo_2167
Name: SO2872 Funciton: hypothetical protein |
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SO2871
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arsenate reductase (EC 1.20.4.1)
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SO2872
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hypothetical protein
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Position: -44
Score: 4.5 Sequence: AAGTTTGAGCTTGTTCAAATAT
Locus tag: Swoo_4177
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -69
Score: 4 Sequence: GAAGGTGATTAATATCACGTTA
Locus tag: Swoo_3332
Name: Shew_1222 Funciton: hypothetical protein |
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Shew_1222
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hypothetical protein
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Position: -109
Score: 4.7 Sequence: TGATTTGATCTGTCTCACAGTA
Position: -79
Score: 4 Sequence: ATTTGTGAGCGACATTATCTAA
Locus tag: Swoo_0508
Name: fdrC Funciton: fumarate reductase cytochrome b subunit
Locus tag: Swoo_0509
Name: frdA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_0510
Name: frdB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
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fdrC
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fumarate reductase cytochrome b subunit
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frdA
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succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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frdB
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succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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Position: -135
Score: 4.7 Sequence: TTTTGTGACGACACTCACATTC
Locus tag: Swoo_4794
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -46
Score: 4 Sequence: CAGCGTGATTGCGGTCGCAAAT
Locus tag: Swoo_3617
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Swoo_3616
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Swoo_3615
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Swoo_3614
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Swoo_3613
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Swoo_3612
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
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nqrA-2
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Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
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nqrB-2
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Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
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nqrC-2
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Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
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nqrD-1
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Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
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nqrE-2
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Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
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nqrF-2
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Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |