Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_0662
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 241
- Operons 130
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -298
Score: 4.3
Sequence: ATTAGTGATATAAGTCAACTAA
Locus tag: Swoo_0663
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
Swoo_0663
sel1
Sel1 domain protein repeat-containing protein precursor
Position: -82
Score: 3.4
Sequence: TTCTGTGCGCACCTTCATAGAT
Locus tag: Swoo_0395
Name: ygbA
Funciton: nitrosative stress induced protein
Swoo_0395
ygbA
nitrosative stress induced protein
Position: -192
Score: 3.6
Sequence: TATTGTGAAATCACATATAAAT
Locus tag: Swoo_0296
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Swoo_0295
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Swoo_0296
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Swoo_0295
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -157
Score: 4.2
Sequence: AAATATGATGTTTTGCACTTTA
Position: -96
Score: 4.4
Sequence: AAATATTACCTCGATCACAATA
Locus tag: Swoo_0057
Name: cytcB
Funciton: diheme cytochrome c4
Swoo_0057
cytcB
diheme cytochrome c4
Position: -154
Score: 4.2
Sequence: AACTGTGTTATTCATCACGATT
Locus tag: Swoo_4279
Name: scrA
Funciton: aminotransferase class V
Swoo_4279
scrA
aminotransferase class V
Position: -148
Score: 4.3
Sequence: AAACGTGAGACTGCTCACTATT
Locus tag: Swoo_3466
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Swoo_3466
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -78
Score: 3.9
Sequence: AAACAGGACGTAGATCACACTT
Locus tag: Swoo_0294
Name: SO0439
Funciton: hypothetical protein
Swoo_0294
SO0439
hypothetical protein
Position: -268
Score: 4.2
Sequence: TAATCAGACGTGCATCACATTT
Locus tag: Swoo_4104
Name: Swoo_4104
Funciton: choline-glycine betaine transporter
Swoo_4104
Swoo_4104
choline-glycine betaine transporter
Position: -173
Score: 3.8
Sequence: TTAGTTGACTTATATCACTAAT
Locus tag: Swoo_0662
Name: crp
Funciton: Cyclic AMP receptor protein Crp
Swoo_0662
crp
Cyclic AMP receptor protein Crp
Position: -44
Score: 4.5
Sequence: CATAGTGATCAATATCACATTC
Locus tag: Swoo_4258
Name: rarD
Funciton: RarD protein
Swoo_4258
rarD
RarD protein
Position: -312
Score: 4.8
Sequence: TTTTGTGAATTGTATCACTTAT
Locus tag: Swoo_3518
Name: SO1247
Funciton: hypothetical protein
Swoo_3518
SO1247
hypothetical protein
Position: -111
Score: 4.3
Sequence: ATTTTAGAGATAGCTCACATTT
Locus tag: Swoo_1224
Name: SO1328
Funciton: transcriptional regulator, LysR family
Swoo_1224
SO1328
transcriptional regulator, LysR family
Position: -98
Score: 4.2
Sequence: TTATGTGAACAACAGCTCAAAA
Locus tag: Swoo_4751
Name: Spea_3654
Funciton: histidinol-phosphate aminotransferase (EC 2.6.1.9)
Swoo_4751
Spea_3654
histidinol-phosphate aminotransferase (EC 2.6.1.9)
Position: -309
Score: 3.9
Sequence: TTGTGTGATAAGGGTCTTGTTT
Position: -206
Score: 3.9
Sequence: TTATGTGATGAATGATTCATTT
Locus tag: Swoo_1050
Name: SO3588
Funciton: gpr1/fun34/yaaH family protein
Swoo_1050
SO3588
gpr1/fun34/yaaH family protein
Position: -136
Score: 4.4
Sequence: AATTGTGATCTGTGTGGCAATT
Locus tag: Swoo_2709
Name: SO2637
Funciton: hypothetical protein
Swoo_2709
SO2637
hypothetical protein
Position: -157
Score: 4.2
Sequence: AAGTGTGATCTAAATCTAGTTG
Locus tag: Swoo_3548
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Swoo_3547
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Swoo_3546
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
Swoo_3548
deoA
thymidine phosphorylase (EC 2.4.2.4)
Swoo_3547
deoB
phosphopentomutase (EC 5.4.2.7)
Swoo_3546
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -66
Score: 4.2
Sequence: TAAAGTGATGAATCTTAAATTT
Locus tag: Swoo_1686
Name: cysD
Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: Swoo_1687
Name: cysN
Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: Swoo_1688
Name: Shew_1424
Funciton: sulfate permease, Trk-type
Locus tag: Swoo_1689
Name: cysC
Funciton: adenylylsulfate kinase (EC 2.7.1.25)
Swoo_1686
cysD
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Swoo_1687
cysN
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Swoo_1688
Shew_1424
sulfate permease, Trk-type
Swoo_1689
cysC
adenylylsulfate kinase (EC 2.7.1.25)
Position: -179
Score: 4.4
Sequence: AAATGTGAACTCCATCACGCAC
Position: -155
Score: 3.9
Sequence: AATATTGATCTTGATCGACTAA
Locus tag: Swoo_4109
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: Swoo_4110
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Swoo_4111
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
Swoo_4109
napD
periplasmic nitrate reductase component NapD
Swoo_4110
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
Swoo_4111
napB
nitrate reductase cytochrome c550-type subunit
Position: -81
Score: 3.9
Sequence: TTTATTGATCGAGATCAGCTTA
Locus tag: Swoo_4146
Name: Sputcn32_0777
Funciton: hypothetical protein
Swoo_4146
Sputcn32_0777
hypothetical protein
Position: -103
Score: 3.7
Sequence: TGTTGTGCTTTAGCACAGAATA
Locus tag: Swoo_3550
Name: tsx
Funciton: nucleoside-specific channel-forming protein, Tsx
Swoo_3550
tsx
nucleoside-specific channel-forming protein, Tsx
Position: -129
Score: 3.8
Sequence: TACTATGATCTGCTTCTGATTT
Locus tag: Swoo_4166
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Swoo_4165
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Swoo_4164
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Swoo_4163
Name: sspA
Funciton: stringent starvation protein A
Locus tag: Swoo_4162
Name: sspB
Funciton: stringent starvation protein B
Swoo_4166
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Swoo_4165
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Swoo_4164
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Swoo_4163
sspA
stringent starvation protein A
Swoo_4162
sspB
stringent starvation protein B
Position: -148
Score: 4.2
Sequence: TTTGATGATCTAGCTCAAAAAA
Locus tag: Swoo_4818
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_4817
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Swoo_4816
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Swoo_4815
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Swoo_4814
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Swoo_4813
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Swoo_4812
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Swoo_4811
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Swoo_4818
hypothetical protein
Swoo_4817
SO4505
hypothetical protein probably related to Formate dehydrogenase function
Swoo_4816
SO4506
iron-sulfur cluster-binding protein
Swoo_4815
SO4507
putative formate dehydrogenase-specific chaperone
Swoo_4814
SO4508
formate dehydrogenase subunit or accessory protein
Swoo_4813
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Swoo_4812
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Swoo_4811
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -304
Score: 3.9
Sequence: AAGTGTGATCTAAGCCAAGTTG
Locus tag: Swoo_2702
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Swoo_2702
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -240
Score: 4
Sequence: AATCGTGACTTAGATTAGACTT
Locus tag: Swoo_4765
Name: SO0141
Funciton: sensory box/GGDEF family protein
Swoo_4765
SO0141
sensory box/GGDEF family protein
Position: -52
Score: 4
Sequence: TACTTTGATATTGAACAAAATA
Locus tag: Swoo_2142
Name: ycbW
Funciton: probable membrane protein YcbW
Swoo_2142
ycbW
probable membrane protein YcbW
Position: -110
Score: 4.6
Sequence: ATCTGTGATCGGTTTAACACTA
Locus tag: Swoo_4860
Name: SO0075
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Swoo_4860
SO0075
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -220
Score: 4.1
Sequence: AAACTTGATTTCGCTCAAGTAA
Locus tag: Swoo_2762
Name: Sfri_2271
Funciton: permease of the major facilitator superfamily
Locus tag: Swoo_2761
Name: Sfri_2272
Funciton: hypothetical protein
Locus tag: Swoo_2760
Name: Sfri_2273
Funciton: nitrogen regulatory protein P-II
Locus tag: Swoo_2759
Name: Sfri_2274
Funciton: hypothetical protein
Swoo_2762
Sfri_2271
permease of the major facilitator superfamily
Swoo_2761
Sfri_2272
hypothetical protein
Swoo_2760
Sfri_2273
nitrogen regulatory protein P-II
Swoo_2759
Sfri_2274
hypothetical protein
Position: -345
Score: 3.8
Sequence: AAGTTTTATCTAGTTAACCCTT
Locus tag: Swoo_4423
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Swoo_4422
Name: mshH
Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Swoo_4421
Name: mshI
Funciton: MSHA biogenesis protein MshI
Swoo_4423
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)
Swoo_4422
mshH
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Swoo_4421
mshI
MSHA biogenesis protein MshI
Position: -100
Score: 3.8
Sequence: AATCGTGACATAGCGCAAAGAC
Locus tag: Swoo_4740
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Swoo_4740
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -82
Score: 4.3
Sequence: TTGTGTGACCTGCATCACGCCA
Locus tag: Swoo_3763
Name: SO3987
Funciton: hypothetical protein
Swoo_3763
SO3987
hypothetical protein
Position: -48
Score: 5.2
Sequence: AAGTGTGACTTAGATCACACAA
Locus tag: Swoo_3910
Name: Spea_3921
Funciton: hypothetical protein
Swoo_3910
Spea_3921
hypothetical protein
Position: -147
Score: 3.7
Sequence: AACCATGATCTATTTCGTAATT
Locus tag: Swoo_3995
Name: fadD-2
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Swoo_3995
fadD-2
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -95
Score: 4.2
Sequence: TAATGTAATTGGAATATCATAT
Locus tag: Swoo_0968
Name: fkpA
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Swoo_0968
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Position: -87
Score: 4.8
Sequence: ATTTGTGATCTAAATCACGCCT
Locus tag: Swoo_1833
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Swoo_1834
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Swoo_1835
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_1836
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Swoo_1837
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Swoo_1838
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Swoo_1839
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Swoo_1840
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Swoo_1833
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Swoo_1834
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
Swoo_1835
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Swoo_1836
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Swoo_1837
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Swoo_1838
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Swoo_1839
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Swoo_1840
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -176
Score: 3.9
Sequence: AAGAGTGTCCCTCGTCACATTT
Locus tag: Swoo_0714
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Swoo_0714
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -140
Score: 4.1
Sequence: ATTTTTGATGCTAATCAAATGA
Locus tag: Swoo_2219
Name: resA
Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: Swoo_2220
Name: SO2101
Funciton: lipoprotein, putative
Locus tag: Swoo_2221
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_2222
Name: null
Funciton: transposase and inactivated derivative
Swoo_2219
resA
C-type cytochrome biogenesis protein ResA (thioredoxin)
Swoo_2220
SO2101
lipoprotein, putative
Swoo_2221
hypothetical protein
Swoo_2222
transposase and inactivated derivative
Position: -288
Score: 3.7
Sequence: TCCAGCGACTTAGATCACATTT
Locus tag: Swoo_3320
Name: SO3553
Funciton: putative sulfate permease
Swoo_3320
SO3553
putative sulfate permease
Position: -154
Score: 4.4
Sequence: AAATGTGAGCAACAACACGTTT
Locus tag: Swoo_0972
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
Swoo_0972
nrfA
cytochrome c552 precursor (EC 1.7.2.2)
Position: -140
Score: 4.7
Sequence: ATGTGTGATCAAGATCAACATT
Locus tag: Swoo_4060
Name: SO3681
Funciton: universal stress protein family
Locus tag: Swoo_4059
Name: Shewana3_3248
Funciton: UspA domain-containing protein
Swoo_4060
SO3681
universal stress protein family
Swoo_4059
Shewana3_3248
UspA domain-containing protein
Position: -243
Score: 3.8
Sequence: TTTTATGACTCTATTAATATAA
Locus tag: Swoo_2563
Name: gloA
Funciton: lactoylglutathione lyase (EC 4.4.1.5)
Swoo_2563
gloA
lactoylglutathione lyase (EC 4.4.1.5)
Position: -306
Score: 4.8
Sequence: AAATGTGATCTGATTCTAACTT
Locus tag: Swoo_3028
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Swoo_3029
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Swoo_3030
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_3031
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Swoo_3032
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Swoo_3033
Name: SO3095
Funciton: hypothetical protein
Swoo_3028
SO3090
MoxR-like ATPase in aerotolerance operon
Swoo_3029
SO3091
Conserved hypothetical protein
Swoo_3030
hypothetical protein
Swoo_3031
SO3093
von Willebrand factor type A domain protein
Swoo_3032
SO3094
TPR domain protein in aerotolerance operon
Swoo_3033
SO3095
hypothetical protein
Position: -96
Score: 4.3
Sequence: TCATTTGACTAAGATCACAAAT
Locus tag: Swoo_1225
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
Swoo_1225
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -214
Score: 4.2
Sequence: AAACGCGATCTAAGTCACTTAA
Locus tag: Swoo_1749
Name: SO3120
Funciton: oxidoreductase, Gfo/Idh/MocA family
Swoo_1749
SO3120
oxidoreductase, Gfo/Idh/MocA family
Position: -148
Score: 4.4
Sequence: TTAAGTGACTTAGATCGCGTTT
Locus tag: Swoo_1750
Name: null
Funciton: hypothetical protein
Swoo_1750
hypothetical protein
Position: -139
Score: 4.4
Sequence: GAGTGTGATCTGATTCAAACTT
Locus tag: Swoo_0285
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Swoo_0285
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -78
Score: 3.5
Sequence: TATAGTGAATTCAATCACTGCT
Locus tag: Swoo_0441
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Swoo_0441
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -256
Score: 3.8
Sequence: CAATTTGATATGCTTCCAAAAA
Position: -144
Score: 3.9
Sequence: TACTTTGATTAAAGTCATAAAA
Locus tag: Swoo_4658
Name: scyA
Funciton: cytochrome c-type protein
Swoo_4658
scyA
cytochrome c-type protein
Position: -311
Score: 4.5
Sequence: TTTTGTGATGTAGGTCTACATT
Locus tag: Swoo_1001
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
Swoo_1001
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -204
Score: 3.8
Sequence: TTTTGTGAGATCGGTCGGAAAG
Locus tag: Swoo_1565
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Swoo_1566
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
Swoo_1565
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
Swoo_1566
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -123
Score: 4.3
Sequence: AATTGTGATATAGGTAAGAGTA
Locus tag: Swoo_0793
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Swoo_0794
Name: SO3719
Funciton: hypothetical protein
Swoo_0793
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Swoo_0794
SO3719
hypothetical protein
Position: -127
Score: 3.9
Sequence: ATTCATGATCCTCTTCACGCAG
Locus tag: Swoo_4512
Name: Sputcn32_0539
Funciton: mechanosensitive ion channel
Swoo_4512
Sputcn32_0539
mechanosensitive ion channel
Position: -112
Score: 4.8
Sequence: AAACGTGTTGTTGCTCACATTT
Locus tag: Swoo_0971
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Swoo_0970
Name: narP
Funciton: Nitrate/nitrite response regulator protein
Swoo_0971
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
Swoo_0970
narP
Nitrate/nitrite response regulator protein
Position: -272
Score: 4.9
Sequence: AAATGTGATGTGGGTCAACAAA
Position: -92
Score: 4.7
Sequence: AAGTGTGATCAAGTTAACCTTA
Locus tag: Swoo_4509
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Swoo_4509
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -184
Score: 4
Sequence: AAACATGACTCGCTTAACAAAA
Locus tag: Swoo_4806
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
Swoo_4806
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -155
Score: 4
Sequence: TTTAGTGCTGTTATTTACACTT
Locus tag: Swoo_2742
Name: SO2757
Funciton: Histidine permease YuiF
Swoo_2742
SO2757
Histidine permease YuiF
Position: -229
Score: 3.8
Sequence: AAATATGAGTTCTATTGCAAAT
Locus tag: Swoo_1222
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
Swoo_1222
SO1326
COG1242: Predicted Fe-S oxidoreductase
Position: -272
Score: 4.7
Sequence: AATCGTGACTTATATCACTTAA
Position: -157
Score: 4.2
Sequence: AGTTGGGACTTTTGTCACATAA
Locus tag: Swoo_3123
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Swoo_3122
Name: feoB
Funciton: Ferrous iron transport protein B
Swoo_3123
feoA
Ferrous iron transport protein A
Swoo_3122
feoB
Ferrous iron transport protein B
Position: -73
Score: 4.8
Sequence: AATTGTGATATCGATCAATATA
Locus tag: Swoo_2604
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Swoo_2604
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -190
Score: 4.8
Sequence: TATATTGATCGATATCACAATT
Locus tag: Swoo_2603
Name: SO2535
Funciton: Predicted glutamine amidotransferase
Swoo_2603
SO2535
Predicted glutamine amidotransferase
Position: -157
Score: 4.2
Sequence: AAATATGATGTTTTGCACTTTA
Position: -96
Score: 4.4
Sequence: AAATATTACCTCGATCACAATA
Locus tag: Swoo_0057
Name: cytcB
Funciton: Cytochrome c4
Swoo_0057
cytcB
Cytochrome c4
Position: -9
Score: 4.2
Sequence: ATTTTTGACATGTATCACCTCA
Locus tag: Swoo_0591
Name: SO4154
Funciton: transcriptional regulator, LysR family
Swoo_0591
SO4154
transcriptional regulator, LysR family
Position: -159
Score: 4.4
Sequence: AATAGTGAGCAGTCTCACGTTT
Locus tag: Swoo_3465
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Swoo_3465
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Position: -110
Score: 4.8
Sequence: TATTGTGATCGAGGTAATATTT
Locus tag: Swoo_0058
Name: engB
Funciton: GTP-binding protein EngB
Swoo_0058
engB
GTP-binding protein EngB
Position: -153
Score: 4.3
Sequence: TACTTTGACCCAGCTCAAAAAA
Position: -78
Score: 3.9
Sequence: AAGCGTTATCATTTACACATTA
Locus tag: Swoo_0123
Name: null
Funciton: hypothetical protein
Swoo_0123
hypothetical protein
Position: -229
Score: 4.6
Sequence: AAATGAGACCAAGATCACACTT
Locus tag: Swoo_0483
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Swoo_0482
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Swoo_0481
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Swoo_0480
Name: hemY
Funciton: HemY domain-containing protein
Swoo_0483
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
Swoo_0482
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
Swoo_0481
hemX
Homolog of E. coli HemX protein
Swoo_0480
hemY
HemY domain-containing protein
Position: -233
Score: 4.5
Sequence: TTTTTTGAACCACATCACAAAC
Locus tag: Swoo_0506
Name: prmA
Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Swoo_0505
Name: nifR3
Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Swoo_0504
Name: fis
Funciton: DNA-binding protein Fis
Swoo_0506
prmA
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Swoo_0505
nifR3
tRNA dihydrouridine synthase B (EC 1.-.-.-)
Swoo_0504
fis
DNA-binding protein Fis
Position: -259
Score: 3.7
Sequence: TAGTGTGATCTAGGTTGGGTAA
Locus tag: Swoo_2736
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
Swoo_2736
SO2753
prolyl endopeptidase (EC 3.4.21.26)
Position: -196
Score: 4.2
Sequence: AACTGAGAGGTGGATCACATTG
Locus tag: Swoo_0863
Name: SO0919
Funciton: Serine transporter, putative
Locus tag: Swoo_0864
Name: Sfri_0687
Funciton: L-serine dehydratase (EC 4.3.1.17)
Swoo_0863
SO0919
Serine transporter, putative
Swoo_0864
Sfri_0687
L-serine dehydratase (EC 4.3.1.17)
Position: -74
Score: 5.1
Sequence: AAGTGTGATCTAGCTTACAATT
Locus tag: Swoo_3714
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Swoo_3715
Name: lipA
Funciton: Lipoate synthase
Swoo_3714
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Swoo_3715
lipA
Lipoate synthase
Position: -82
Score: 3.9
Sequence: AAATGGGAGAAAGATCCCATTA
Locus tag: Swoo_2048
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
Swoo_2048
cdd
cytidine deaminase (EC 3.5.4.5)
Position: -163
Score: 4.3
Sequence: TTTTTTGAGCTAGATCATCAAA
Locus tag: Swoo_4819
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Swoo_4820
Name: SO4502
Funciton: conserved domain protein
Swoo_4819
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
Swoo_4820
SO4502
conserved domain protein
Position: -290
Score: 5.1
Sequence: CTTTGTGATATCAATCACAATA
Locus tag: Swoo_4150
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
Swoo_4150
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL
Position: -321
Score: 4.9
Sequence: TTCTGTGACCTGTGTCACAAAA
Locus tag: Swoo_2565
Name: null
Funciton: TonB-dependent receptor
Swoo_2565
TonB-dependent receptor
Position: -288
Score: 3.7
Sequence: TCCAGCGACTTAGATCACATTT
Locus tag: Swoo_3320
Name: SO3553
Funciton: putative sulfate permease
Locus tag: Swoo_3321
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Swoo_3322
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Swoo_3320
SO3553
putative sulfate permease
Swoo_3321
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Swoo_3322
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Position: -232
Score: 4.2
Sequence: AATGGTGAGCTGGATCATGTTA
Position: -145
Score: 4.5
Sequence: CAATGTGATCCTCTTCGCAAAC
Locus tag: Swoo_0885
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Swoo_0886
Name: SO0941
Funciton: hypothetical protein
Swoo_0885
cadC
transcriptional regulator-related protein
Swoo_0886
SO0941
hypothetical protein
Position: -153
Score: 5.1
Sequence: TTATGTGATGATGTTCAAAATT
Locus tag: Swoo_2110
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Swoo_2110
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -149
Score: 4.1
Sequence: TTTATTGATCTAGCTCAATTTT
Position: -130
Score: 4.7
Sequence: TTTTGTGAATCTCTTAACATTT
Locus tag: Swoo_0710
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Swoo_0711
Name: cydC
Funciton: Transport ATP-binding protein CydC
Swoo_0710
cydD
Transport ATP-binding protein CydD
Swoo_0711
cydC
Transport ATP-binding protein CydC
Position: -81
Score: 4.6
Sequence: TATTGTGAAAGTCATCACACAG
Locus tag: Swoo_1771
Name: SO2806
Funciton: hypothetical protein
Swoo_1771
SO2806
hypothetical protein
Position: -82
Score: 4.2
Sequence: CAAGGTGATTTATCTCACACAG
Locus tag: Swoo_2030
Name: SO2589
Funciton: isopenicillin N synthase
Swoo_2030
SO2589
isopenicillin N synthase
Position: -172
Score: 4.2
Sequence: TTTTTTGAGCTGGGTCAAAGTA
Locus tag: Swoo_0124
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
Swoo_0124
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -86
Score: 4.4
Sequence: GTATATGACCCAGTTCACATTT
Locus tag: Swoo_3036
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Swoo_3036
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Position: -215
Score: 3.8
Sequence: AATTGCTAGATAGATCTCACTT
Locus tag: Swoo_4355
Name: SO0543
Funciton: hypothetical protein
Swoo_4355
SO0543
hypothetical protein
Position: -98
Score: 5
Sequence: AAGTGTGATCTTGGTCTCATTT
Locus tag: Swoo_0484
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
Swoo_0484
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -234
Score: 4.9
Sequence: AGTCGTGATCTTGATCACGTTT
Locus tag: Swoo_1265
Name: SO3421
Funciton: b-type cytochrome, putative
Swoo_1265
SO3421
b-type cytochrome, putative
Position: -201
Score: 4.1
Sequence: AAGTGTGATCCAACTTGTATTT
Locus tag: Swoo_4839
Name: hutC
Funciton: histidine utilization repressor
Locus tag: Swoo_4838
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Swoo_4837
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
Swoo_4839
hutC
histidine utilization repressor
Swoo_4838
hutU
urocanate hydratase (EC 4.2.1.49)
Swoo_4837
hutH
histidine ammonia-lyase (EC 4.3.1.3)
Position: -138
Score: 4.1
Sequence: AAGTTAGAATCAGATCACATTT
Locus tag: Swoo_3027
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Swoo_3026
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Swoo_3027
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Swoo_3026
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -48
Score: 4.1
Sequence: TAAATTGATCTAGATCAATAAA
Locus tag: Swoo_1790
Name: null
Funciton: hypothetical protein
Swoo_1790
hypothetical protein
Position: -74
Score: 4.7
Sequence: AAGTGTGAAGTGGTTAACAAAA
Locus tag: Swoo_1715
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Swoo_1716
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Swoo_1715
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Swoo_1716
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -220
Score: 4.3
Sequence: TAGCTTGATCTAGATCAACTTT
Position: -177
Score: 4.4
Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: Swoo_2425
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Swoo_2424
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Swoo_2423
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Swoo_2422
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
Swoo_2425
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
Swoo_2424
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
Swoo_2423
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Swoo_2422
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -172
Score: 4.3
Sequence: ATATGTGCTGCTGATCTTATTT
Locus tag: Swoo_0655
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Swoo_0656
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Swoo_0657
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Swoo_0658
Name: SO0620
Funciton: FIG008480: hypothetical protein
Swoo_0655
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Swoo_0656
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Swoo_0657
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Swoo_0658
SO0620
FIG008480: hypothetical protein
Position: -125
Score: 4.2
Sequence: GAATTTGATCTGTCTCAAACTT
Locus tag: Swoo_1260
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Swoo_1261
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Swoo_1260
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Swoo_1261
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Position: -337
Score: 3.7
Sequence: GTTTGCGAAGAGGATCACATTG
Position: -250
Score: 4.5
Sequence: TAACATGATCCAGCTCACCATT
Locus tag: Swoo_0884
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Swoo_0883
Name: null
Funciton: hypothetical protein
Swoo_0884
SO0939
split-soret diheme cytochrome c
Swoo_0883
hypothetical protein
Position: -116
Score: 4.5
Sequence: ATGTGTGATCTAAGTATCAATT
Locus tag: Swoo_1933
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
Swoo_1933
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -211
Score: 4.3
Sequence: AATTATGACGTCGCTCACTAAA
Position: -158
Score: 4.5
Sequence: AAGTGTGAGTTCGATCAAGTAT
Position: -108
Score: 3.9
Sequence: TTTATTGATTTGGATCAATAAA
Locus tag: Swoo_3207
Name: ompW
Funciton: outer membrane protein W precursor
Swoo_3207
ompW
outer membrane protein W precursor
Position: -116
Score: 3.7
Sequence: ATATGAGCGCTAAATCACGCTT
Locus tag: Swoo_0881
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Swoo_0882
Name: null
Funciton: hypothetical protein
Swoo_0881
cadC
transcriptional regulator-related protein
Swoo_0882
hypothetical protein
Position: -310
Score: 4.2
Sequence: AGTTGTTAACTGGATCTCAAAT
Locus tag: Swoo_2882
Name: Spea_1673
Funciton: hypothetical protein
Swoo_2882
Spea_1673
hypothetical protein
Position: -109
Score: 4.7
Sequence: TGATTTGATCTGTCTCACAGTA
Position: -79
Score: 4
Sequence: ATTTGTGAGCGACATTATCTAA
Locus tag: Swoo_0508
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Swoo_0509
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_0510
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Swoo_0508
fdrC2
Fumarate reductase cytochrome b subunit
Swoo_0509
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Swoo_0510
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -138
Score: 4.8
Sequence: GTTTGTGATGTGGTTCAAAAAA
Locus tag: Swoo_0507
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Swoo_0507
frdC1
Fumarate reductase cytochrome b subunit
Position: -76
Score: 4.5
Sequence: AAACGTGATCAAGATCACGACT
Locus tag: Swoo_1264
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
Swoo_1264
yfiA-2
Ribosome hibernation protein YfiA
Position: -133
Score: 5
Sequence: TATTGTGATTTGTGTCACGCTA
Locus tag: Swoo_1718
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Swoo_1719
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Swoo_1718
fahA
Fumarylacetoacetate hydrolase family protein
Swoo_1719
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -106
Score: 3.9
Sequence: TTTGTTGATCTTAATCAAAAAC
Locus tag: Swoo_3788
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Swoo_3789
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Swoo_3790
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Swoo_3788
Sfri_4035
Conserved hypothetical signal peptide protein
Swoo_3789
Sfri_4034
FMN-binding domain-containing protein
Swoo_3790
Sfri_4033
PepSY-associated TM helix domain-containing protein
Position: -241
Score: 3.3
Sequence: AATTATTAACTCTTTCTTAAAT
Locus tag: Swoo_4152
Name: omp35
Funciton: outer membrane porin
Swoo_4152
omp35
outer membrane porin
Position: -91
Score: 3.8
Sequence: CTTTTTGATCTTTATCTAGTTT
Locus tag: Swoo_4894
Name: SO4743
Funciton: ferrichrome-iron receptor
Locus tag: Swoo_4893
Name: deoR
Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: Swoo_4892
Name: glmS
Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Swoo_4894
SO4743
ferrichrome-iron receptor
Swoo_4893
deoR
transcriptional regulator of glmS gene, DeoR family
Swoo_4892
glmS
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Position: -67
Score: 3.7
Sequence: TATTTTTACTTGCCTCAACTAA
Locus tag: Swoo_0917
Name: Sputcn32_0834
Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Swoo_0916
Name: asnC
Funciton: regulatory protein AsnC
Swoo_0917
Sputcn32_0834
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Swoo_0916
asnC
regulatory protein AsnC
Position: -91
Score: 3.8
Sequence: AAGTGTTATAAACATCATTTTA
Locus tag: Swoo_4247
Name: SO3967
Funciton: Molybdenum-binding periplasmic protein
Swoo_4247
SO3967
Molybdenum-binding periplasmic protein
Position: -185
Score: 4
Sequence: TTCAGTGATGTAGAACTCAAAA
Locus tag: Swoo_2973
Name: swp_4302
Funciton: hypothetical protein
Swoo_2973
swp_4302
hypothetical protein
Position: -214
Score: 4.5
Sequence: ATTTGTGAATGTACTCATATAT
Locus tag: Swoo_3236
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Swoo_3235
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
Swoo_3236
etfB
electron transfer flavoprotein, beta subunit
Swoo_3235
etfA
electron transfer flavoprotein, alpha subunit
Position: -215
Score: 4.2
Sequence: AAGTGTGATCGTGATCACGCGA
Locus tag: Swoo_1283
Name: SO3541
Funciton: sodium:alanine symporter family protein
Swoo_1283
SO3541
sodium:alanine symporter family protein
Position: -127
Score: 3.9
Sequence: ATTCATGATCCTCTTCACGCAG
Locus tag: Swoo_4512
Name: kefA
Funciton: mechanosensitive ion channel
Swoo_4512
kefA
mechanosensitive ion channel
Position: -228
Score: 4
Sequence: AAATGAAACATCTATCACACAT
Locus tag: Swoo_1424
Name: SO1603
Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: Swoo_1423
Name: SO1602
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: Swoo_1422
Name: Sputcn32_1325
Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: Swoo_1421
Name: SO1599
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Swoo_1424
SO1603
putative transcriptional regulator, inferred for PFA pathway
Swoo_1423
SO1602
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Swoo_1422
Sputcn32_1325
omega-3 polyunsaturated fatty acid synthase PfaB
Swoo_1421
SO1599
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Position: -149
Score: 4.3
Sequence: AAGTTTGATCTAGTCCACAATC
Locus tag: Swoo_4151
Name: omp35
Funciton: outer membrane porin
Swoo_4151
omp35
outer membrane porin
Position: -92
Score: 4
Sequence: TAACTTGATTTGAATCAATATT
Locus tag: Swoo_0239
Name: null
Funciton: hypothetical protein
Locus tag: Swoo_0240
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Swoo_0241
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Swoo_0242
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Swoo_0239
hypothetical protein
Swoo_0240
nrfB
Cytochrome c-type protein NrfB precursor
Swoo_0241
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Swoo_0242
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD
Position: -160
Score: 4
Sequence: AAGTGTGCTTTAGCGCAGATTT
Locus tag: Swoo_4456
Name: mccA
Funciton: cytochrome c, putative
Swoo_4456
mccA
cytochrome c, putative
Position: -342
Score: 4.2
Sequence: TTTTGTGACCTCTCTATCCTTT
Position: -87
Score: 3.9
Sequence: AATTGTTAAGTTGTTCAGCTAA
Locus tag: Swoo_4477
Name: mccA
Funciton: cytochrome c, putative
Swoo_4477
mccA
cytochrome c, putative
Position: -296
Score: 4.2
Sequence: AAGTTTGAATCAGATCACACTC
Locus tag: Swoo_0284
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
Swoo_0284
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -224
Score: 4.2
Sequence: TTTTATGACTTTAATCAAAGTA
Locus tag: Swoo_4659
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Swoo_4660
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Swoo_4661
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Swoo_4662
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Swoo_4663
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
Swoo_4659
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Swoo_4660
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Swoo_4661
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Swoo_4662
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Swoo_4663
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -111
Score: 4.7
Sequence: AGAAGTGATGTAGAACACATAA
Locus tag: Swoo_0327
Name: ppc
Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Swoo_0326
Name: yceB
Funciton: uncharacterized lipoprotein YceB precursor
Swoo_0327
ppc
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Swoo_0326
yceB
uncharacterized lipoprotein YceB precursor
Position: -92
Score: 3.8
Sequence: ATATGATATTCCAATTACATTA
Locus tag: Swoo_0967
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Swoo_0966
Name: slyX
Funciton: protein SlyX
Locus tag: Swoo_0965
Name: SO1061
Funciton: TPR domain protein
Locus tag: Swoo_0964
Name: spaP
Funciton: Putative lipoprotein
Swoo_0967
SO1064
FOG: WD40 repeat
Swoo_0966
slyX
protein SlyX
Swoo_0965
SO1061
TPR domain protein
Swoo_0964
spaP
Putative lipoprotein
Position: -288
Score: 3.7
Sequence: ATGAGTTACAACTTTCACACAT
Locus tag: Swoo_3125
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Swoo_3126
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Swoo_3127
Name: mtrB
Funciton: outer membrane protein, MtrB
Swoo_3125
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
Swoo_3126
mtrA
periplasmic decaheme cytochrome c, MtrA
Swoo_3127
mtrB
outer membrane protein, MtrB
Position: -238
Score: 4.4
Sequence: TCGCGTGATCACGATCACACTT
Position: -97
Score: 3.8
Sequence: AAACAAGATATAGAACACATTT
Locus tag: Swoo_1282
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Swoo_1282
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -152
Score: 4.3
Sequence: AATTTTTATATTTATCAAAATA
Locus tag: Swoo_0195
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
Swoo_0195
cymA
membrane anchored tetraheme cytochrome c, CymA
Position: -222
Score: 4.3
Sequence: GAATGTGAGTGTCGTCACAAAA
Locus tag: Swoo_4793
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Swoo_4792
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Swoo_4791
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Swoo_4790
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Swoo_4789
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Swoo_4788
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Swoo_4787
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Swoo_4786
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Swoo_4793
moaA
molybdenum cofactor biosynthesis protein MoaA
Swoo_4792
moaB
molybdenum cofactor biosynthesis protein MoaB
Swoo_4791
moaC
molybdenum cofactor biosynthesis protein MoaC
Swoo_4790
moaD
molybdenum cofactor biosynthesis protein MoaD
Swoo_4789
moaE
molybdenum cofactor biosynthesis protein MoaE
Swoo_4788
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Swoo_4787
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Swoo_4786
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -47
Score: 3.8
Sequence: AATGTAGACCTACATCACAAAA
Locus tag: Swoo_1002
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
Swoo_1002
mdh
malate dehydrogenase (EC 1.1.1.37)
Position: -141
Score: 4.1
Sequence: ATATGAGATGCAGCTCTCATCT
Locus tag: Swoo_3307
Name: SO3406
Funciton: FIG024006: iron uptake protein
Locus tag: Swoo_3308
Name: SO3407
Funciton: FIG138928: iron-regulated membrane protein
Locus tag: Swoo_3309
Name: SO3408
Funciton: FIG016502: iron uptake protein
Swoo_3307
SO3406
FIG024006: iron uptake protein
Swoo_3308
SO3407
FIG138928: iron-regulated membrane protein
Swoo_3309
SO3408
FIG016502: iron uptake protein
Position: -66
Score: 4.2
Sequence: CCTTGTGACTTCGCTCACCTTT
Locus tag: Swoo_2168
Name: SO2871
Funciton: arsenate reductase (EC 1.20.4.1)
Locus tag: Swoo_2167
Name: SO2872
Funciton: hypothetical protein
Swoo_2168
SO2871
arsenate reductase (EC 1.20.4.1)
Swoo_2167
SO2872
hypothetical protein
Position: -44
Score: 4.5
Sequence: AAGTTTGAGCTTGTTCAAATAT
Locus tag: Swoo_4177
Name: null
Funciton: hypothetical protein
Swoo_4177
hypothetical protein
Position: -69
Score: 4
Sequence: GAAGGTGATTAATATCACGTTA
Locus tag: Swoo_3332
Name: Shew_1222
Funciton: hypothetical protein
Swoo_3332
Shew_1222
hypothetical protein
Position: -109
Score: 4.7
Sequence: TGATTTGATCTGTCTCACAGTA
Position: -79
Score: 4
Sequence: ATTTGTGAGCGACATTATCTAA
Locus tag: Swoo_0508
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: Swoo_0509
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Swoo_0510
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Swoo_0508
fdrC
fumarate reductase cytochrome b subunit
Swoo_0509
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Swoo_0510
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -135
Score: 4.7
Sequence: TTTTGTGACGACACTCACATTC
Locus tag: Swoo_4794
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Swoo_4794
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -46
Score: 4
Sequence: CAGCGTGATTGCGGTCGCAAAT
Locus tag: Swoo_3617
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Swoo_3616
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Swoo_3615
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Swoo_3614
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Swoo_3613
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Swoo_3612
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Swoo_3617
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Swoo_3616
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Swoo_3615
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Swoo_3614
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Swoo_3613
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Swoo_3612
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
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