Regulon of Crp in Shewanella piezotolerans WP3
| Regulator type: | Transcription factor |
| TF locus tag: | swp_0755 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 262 |
| - Operons | 136 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -162
Score: 4.4 Sequence: AAATGTGATGTTTAACTCAAAG
Locus tag: swp_2633
Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
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fumB
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Fumarate hydratase class I, aerobic (EC 4.2.1.2)
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Position: -181
Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: swp_4724
Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: swp_4725
Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) |
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purH
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IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
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purD
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Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
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Position: -293
Score: 4.6 Sequence: AAACGTGAGATTGCTCACCTTT
Locus tag: swp_3606
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
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icd
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Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
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Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATAA
Locus tag: swp_5075
Name: cytcB Funciton: diheme cytochrome c4 |
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cytcB
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diheme cytochrome c4
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Position: -283
Score: 4.4 Sequence: AAGTATGAATCAGATCACACTT
Position: -177
Score: 3.7 Sequence: AACACTGAGATTAATCACATAA
Position: -101
Score: 3.7 Sequence: TTTCGTAAAGCTAAACACAATA
Locus tag: swp_4741
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
|
2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -67
Score: 4.4 Sequence: AAATTTGATCTGCCGCTCAATT
Locus tag: swp_3422
Name: fadE Funciton: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE
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acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -184
Score: 4.4 Sequence: AACTGTGATCTCTATCACCGAC
Locus tag: swp_3568
Name: SO1482 Funciton: tonB-dependent receptor, putative |
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SO1482
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tonB-dependent receptor, putative
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Position: -217
Score: 4.4 Sequence: ATTCGTGCTGAAAATCAAATTT
Locus tag: swp_4772
Name: pilZ Funciton: type IV pilus assembly PilZ |
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pilZ
|
type IV pilus assembly PilZ
|
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Position: -143
Score: 4.3 Sequence: ATTTGTGATCCATGTGGCAATT
Locus tag: swp_1858
Name: SO2637 Funciton: hypothetical protein |
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SO2637
|
hypothetical protein
|
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Position: -127
Score: 3.9 Sequence: AAAGTTGTCATAGATCACATTT
Locus tag: swp_0315
Name: SO0355 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: swp_0314
Name: SO0354 Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
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SO0355
|
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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SO0354
|
inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
|
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Position: -120
Score: 4.3 Sequence: ATGAGTGATCTTGTTCATAGTA
Locus tag: swp_2077
Name: SO0296 Funciton: integral membrane domain protein |
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SO0296
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integral membrane domain protein
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Position: -139
Score: 4.8 Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: swp_1230
Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: swp_1231
Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: swp_1232
Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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thymidine phosphorylase (EC 2.4.2.4)
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deoB
|
phosphopentomutase (EC 5.4.2.7)
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deoD-2
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purine nucleoside phosphorylase (EC 2.4.2.1)
|
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Position: -64
Score: 4.1 Sequence: AAACGTGATCAACAGCATCTTT
Locus tag: swp_4510
Name: Sputcn32_0777 Funciton: hypothetical protein |
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Sputcn32_0777
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hypothetical protein
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Position: -119
Score: 4.5 Sequence: AAATGTTATCTCTGTCAAACAA
Locus tag: swp_2516
Name: SO1419 Funciton: lipoprotein, putative
Locus tag: swp_2517
Name: SO1420 Funciton: outer membrane porin, putative |
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SO1419
|
lipoprotein, putative
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SO1420
|
outer membrane porin, putative
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Position: -42
Score: 3.8 Sequence: TACATTGATATCTATCACTATT
Locus tag: swp_3020
Name: yceI Funciton: hypothetical protein
Locus tag: swp_3019
Name: SO2891 Funciton: type IIA topoisomerase, B subunit |
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yceI
|
hypothetical protein
|
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SO2891
|
type IIA topoisomerase, B subunit
|
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Position: -131
Score: 4.2 Sequence: AACTATGATCTGGTTCTAATTT
Locus tag: swp_0793
Name: petA Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: swp_0794
Name: petB Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: swp_0795
Name: petC Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: swp_0796
Name: sspA Funciton: stringent starvation protein A
Locus tag: swp_0797
Name: sspB Funciton: stringent starvation protein B |
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petA
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ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
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petB
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ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
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petC
|
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
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sspA
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stringent starvation protein A
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sspB
|
stringent starvation protein B
|
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Position: -271
Score: 4.4 Sequence: TTCCTTGATCGAGATCACACAA
Locus tag: swp_3538
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -21
Score: 4.2 Sequence: AAGTGTGATCCGCAACTAAATT
Locus tag: swp_1867
Name: null Funciton: hypothetical protein swp_1867
Locus tag: swp_1868
Name: icd Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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hypothetical protein swp_1867
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icd
|
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Position: -156
Score: 4 Sequence: ATTCGTGACCTAGATTAGACTT
Locus tag: swp_0168
Name: SO0141 Funciton: sensory box/GGDEF family protein |
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SO0141
|
sensory box/GGDEF family protein
|
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Position: -239
Score: 3.8 Sequence: TTTAATAATATAGATCATAAAA
Position: -143
Score: 4.1 Sequence: TATTTTGATATTGATGAAATTA
Position: -2
Score: 4 Sequence: ATATGGAATTTCTATCACCTTT
Locus tag: swp_2809
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
|
probable membrane protein YcbW
|
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Position: -100
Score: 4.1 Sequence: CTCTATGATATAGCTCACAGAT
Locus tag: swp_1789
Name: Sfri_2271 Funciton: permease of the major facilitator superfamily
Locus tag: swp_1790
Name: Sfri_2272 Funciton: hypothetical protein
Locus tag: swp_1791
Name: Sfri_2273 Funciton: nitrogen regulatory protein P-II
Locus tag: swp_1792
Name: Sfri_2274 Funciton: hypothetical protein |
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Sfri_2271
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permease of the major facilitator superfamily
|
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Sfri_2272
|
hypothetical protein
|
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Sfri_2273
|
nitrogen regulatory protein P-II
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Sfri_2274
|
hypothetical protein
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Position: -148
Score: 4 Sequence: TTATGAGATTTCAATTACCTTT
Position: -87
Score: 3.8 Sequence: AAGTTAGCTGCAGATCACACTT
Locus tag: swp_5035
Name: null Funciton: hypothetical protein swp_5035
Locus tag: swp_5034
Name: null Funciton: hypothetical protein
Locus tag: swp_5033
Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: swp_5032
Name: SO4506 Funciton: iron-sulfur cluster-binding protein
Locus tag: swp_5031
Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: swp_5030
Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: swp_5029
Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: swp_5028
Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: swp_5027
Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) |
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hypothetical protein swp_5035
|
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hypothetical protein
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SO4505
|
hypothetical protein probably related to Formate dehydrogenase function
|
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SO4506
|
iron-sulfur cluster-binding protein
|
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SO4507
|
putative formate dehydrogenase-specific chaperone
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SO4508
|
formate dehydrogenase subunit or accessory protein
|
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SO4509
|
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
|
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fdhB-1
|
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
|
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SO4511
|
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
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Position: -181
Score: 3.8 Sequence: TATAGCGATAAAGTTAAAATTT
Locus tag: swp_0481
Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40) |
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SO4118
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NADP-dependent malic enzyme (EC 1.1.1.40)
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Position: -258
Score: 4.3 Sequence: TTTATTGATCTAGATCTAATAA
Locus tag: swp_4010
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: swp_4009
Name: SO0941 Funciton: hypothetical protein |
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cadC
|
transcriptional regulator-related protein
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SO0941
|
hypothetical protein
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Position: -113
Score: 4.9 Sequence: TTTTTTGATCTAGTCCACATAT
Locus tag: swp_0182
Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
|
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
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Position: -157
Score: 4.2 Sequence: TATTGTGACCGGTTACGCAGTA
Locus tag: swp_4120
Name: Sama_2899 Funciton: transcriptional regulator, LysR family |
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Sama_2899
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transcriptional regulator, LysR family
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Position: -4
Score: 4.6 Sequence: TACTGTGATCGATATCACGTCT
Locus tag: swp_4346
Name: SO3987 Funciton: hypothetical protein |
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SO3987
|
hypothetical protein
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Position: -248
Score: 4.2 Sequence: TAACGTGCTAAAGCTCACGAAA
Locus tag: swp_4239
Name: cadC Funciton: transcriptional regulator-related protein |
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cadC
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transcriptional regulator-related protein
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Position: -222
Score: 3.7 Sequence: ATGCGCGATTTGCATTACCTTT
Locus tag: swp_3965
Name: fadD-2 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD-2
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long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
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Position: -100
Score: 5.7 Sequence: TTTTGTGATCTGCCTCACAAAT
Locus tag: swp_0564
Name: Sama_3134 Funciton: membrane protein |
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Sama_3134
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membrane protein
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Position: -119
Score: 4.3 Sequence: TTTTATGATATGCATCACCTCA
Locus tag: swp_4059
Name: cobA Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: swp_4058
Name: cysD Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: swp_4057
Name: cysN Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: swp_4056
Name: Shew_1424 Funciton: sulfate permease, Trk-type
Locus tag: swp_4055
Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25) |
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cobA
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uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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cysD
|
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
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cysN
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sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
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Shew_1424
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sulfate permease, Trk-type
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cysC
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adenylylsulfate kinase (EC 2.7.1.25)
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Position: -204
Score: 3.9 Sequence: TTTTGTTATGACGGTTGCATTT
Locus tag: swp_1592
Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25) |
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cysC
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adenylylsulfate kinase (EC 2.7.1.25)
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Position: -131
Score: 3.8 Sequence: AAATGTGATCAGAACTGCGTTA
Locus tag: swp_4841
Name: yhgI Funciton: NfuA Fe-S protein maturation |
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yhgI
|
NfuA Fe-S protein maturation
|
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Position: -20
Score: 4.6 Sequence: AACTGTGACCTAGTTCACGGAT
Locus tag: swp_2955
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: swp_2953
Name: SO1927.1 Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: swp_2952
Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_2950
Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: swp_2949
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: swp_2948
Name: sucB Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: swp_2947
Name: sucC Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: swp_2946
Name: sucD Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sdhC
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Succinate dehydrogenase cytochrome b-556 subunit
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SO1927.1
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Succinate dehydrogenase hydrophobic membrane anchor protein
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sdhA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
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succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
|
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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sucC
|
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
|
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Position: -137
Score: 3.9 Sequence: AAAGGTGTCGCTCGTCACATTT
Locus tag: swp_0809
Name: SO3774 Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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SO3774
|
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
|
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Position: -150
Score: 4 Sequence: AAATGTGAGCAACAACACGTTC
Locus tag: swp_3958
Name: nrfA Funciton: cytochrome c552 precursor (EC 1.7.2.2) |
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nrfA
|
cytochrome c552 precursor (EC 1.7.2.2)
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Position: -269
Score: 4.7 Sequence: AAGTGTGACGAACATAACATTA
Locus tag: swp_4939
Name: fixA Funciton: electron transfer flavoprotein, beta subunit FixA
Locus tag: swp_4940
Name: fixB Funciton: electron transfer flavoprotein, alpha subunit FixB
Locus tag: swp_4941
Name: fixC Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Locus tag: swp_4942
Name: fixX Funciton: ferredoxin-like protein FixX |
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fixA
|
electron transfer flavoprotein, beta subunit FixA
|
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fixB
|
electron transfer flavoprotein, alpha subunit FixB
|
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fixC
|
probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
|
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fixX
|
ferredoxin-like protein FixX
|
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Position: -79
Score: 4.3 Sequence: TTTTGTGAGCAAGATCAACTTC
Locus tag: swp_1054
Name: null Funciton: hypothetical protein
Locus tag: swp_1055
Name: SO3681 Funciton: universal stress protein family |
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hypothetical protein
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SO3681
|
universal stress protein family
|
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Position: -123
Score: 3.8 Sequence: TTATGCGCCCTTCATCACCCTA
Locus tag: swp_3241
Name: nadC Funciton: di-and tricarboxylate transporter |
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nadC
|
di-and tricarboxylate transporter
|
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Position: -141
Score: 4.7 Sequence: TTCTGTGATTCAGGTCGCAAAT
Locus tag: swp_3809
Name: Sbal_1323 Funciton: HTH-type transcriptional regulator BetI
Locus tag: swp_3810
Name: Sbal_1324 Funciton: betaine aldehyde dehydrogenase (EC 1.2.1.8)
Locus tag: swp_3811
Name: Sbal_1325 Funciton: choline dehydrogenase (EC 1.1.99.1)
Locus tag: swp_3812
Name: null Funciton: hypothetical protein swp_3812
Locus tag: swp_3813
Name: Sden_0716 Funciton: predicted choline transporter BetT-II
Locus tag: swp_3814
Name: Sbal_1327 Funciton: conserved hypothetical protein 2001
Locus tag: swp_3815
Name: marR Funciton: transcriptional regulator, MarR family |
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Sbal_1323
|
HTH-type transcriptional regulator BetI
|
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Sbal_1324
|
betaine aldehyde dehydrogenase (EC 1.2.1.8)
|
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Sbal_1325
|
choline dehydrogenase (EC 1.1.99.1)
|
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|
hypothetical protein swp_3812
|
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Sden_0716
|
predicted choline transporter BetT-II
|
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Sbal_1327
|
conserved hypothetical protein 2001
|
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marR
|
transcriptional regulator, MarR family
|
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Position: -105
Score: 4.4 Sequence: TTGTTTGACAGAGATAACATTT
Locus tag: swp_2515
Name: apbE Funciton: thiamin biosynthesis lipoprotein ApbE |
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apbE
|
thiamin biosynthesis lipoprotein ApbE
|
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Position: -97
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: swp_3141
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: swp_3143
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: swp_3144
Name: null Funciton: hypothetical protein
Locus tag: swp_3145
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: swp_3146
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: swp_3148
Name: SO3095 Funciton: hypothetical protein |
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SO3090
|
MoxR-like ATPase in aerotolerance operon
|
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SO3091
|
Conserved hypothetical protein
|
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|
hypothetical protein
|
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SO3093
|
von Willebrand factor type A domain protein
|
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SO3094
|
TPR domain protein in aerotolerance operon
|
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SO3095
|
hypothetical protein
|
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|
Position: -98
Score: 4.6 Sequence: TCATTTGACTTAGATCACAAAT
Locus tag: swp_3798
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaC
|
Adenylate cyclase (EC 4.6.1.1)
|
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Position: -96
Score: 4 Sequence: TTTTGTGCGCACCTTCAAACTT
Locus tag: swp_2171
Name: ygbA Funciton: nitrosative stress induced protein |
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ygbA
|
nitrosative stress induced protein
|
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Position: -185
Score: 3.7 Sequence: AAACGCGATTTAAGTCACTTTC
Locus tag: swp_1670
Name: SO3120 Funciton: oxidoreductase, Gfo/Idh/MocA family |
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SO3120
|
oxidoreductase, Gfo/Idh/MocA family
|
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Position: -117
Score: 4.3 Sequence: TGTTGTGCGCGAGTTCACATTG
Locus tag: swp_5150
Name: SO4743 Funciton: ferrichrome-iron receptor
Locus tag: swp_5149
Name: deoR Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: swp_5148
Name: glmS Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
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SO4743
|
ferrichrome-iron receptor
|
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|
deoR
|
transcriptional regulator of glmS gene, DeoR family
|
||
|
glmS
|
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
|
||
|
Position: -140
Score: 4.1 Sequence: AACTGGTATTTTGATCACATTT
Locus tag: swp_0747
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: swp_0748
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: swp_0749
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: swp_0750
Name: SO0620 Funciton: FIG008480: hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
FIG008480: hypothetical protein
|
||
|
Position: -77
Score: 4.6 Sequence: TATAGTGATCTCAATCACAGCT
Locus tag: swp_0358
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) |
|||
|
ilvC
|
Ketol-acid reductoisomerase (EC 1.1.1.86)
|
||
|
Position: -231
Score: 4.4 Sequence: CAATTTGATGTAGTTCGAATAT
Position: -131
Score: 4.8 Sequence: TAACGCGATTTAAATCACAAAT
Locus tag: swp_2044
Name: scyA Funciton: cytochrome c-type protein |
|||
|
scyA
|
cytochrome c-type protein
|
||
|
Position: -140
Score: 3.8 Sequence: ATTTATACTCTACATCATATTT
Locus tag: swp_4101
Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon |
|||
|
argR
|
arginine pathway regulatory protein ArgR, repressor of arg regulon
|
||
|
Position: -245
Score: 3.9 Sequence: TTATGTGATTAATCTCAGTGTT
Position: -139
Score: 4.9 Sequence: AAGTGTGATCTGATTCATACTT
Locus tag: swp_4740
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
|||
|
acnB
|
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
|
||
|
Position: -124
Score: 3.9 Sequence: TTTTGTGAGGTAGGTAAAGGTA
Position: -77
Score: 3.7 Sequence: TGATCTGATTCAATTAAAAATA
Locus tag: swp_4046
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: swp_4045
Name: SO3719 Funciton: hypothetical protein |
|||
|
hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
|
||
|
SO3719
|
hypothetical protein
|
||
|
Position: -310
Score: 4.7 Sequence: ATTTGTGAGTTAGATCATGTTT
Position: -92
Score: 4.6 Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: swp_4702
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -77
Score: 4.1 Sequence: ATTTGAGAGCAATATCACTTTT
Locus tag: swp_1820
Name: SO2757 Funciton: Histidine permease YuiF |
|||
|
SO2757
|
Histidine permease YuiF
|
||
|
Position: -280
Score: 4.6 Sequence: AAGCGTGATCTACGTCACACTG
Position: -157
Score: 4.2 Sequence: AGTTGAGAGATTTGTCACATAA
Locus tag: swp_3271
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB Funciton: Ferrous iron transport protein B |
|||
|
feoA
|
Ferrous iron transport protein A
|
||
|
feoB
|
Ferrous iron transport protein B
|
||
|
Position: -248
Score: 3.6 Sequence: TTGTGAGTCCTTAATCACGTTT
Locus tag: swp_1825
Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26) |
|||
|
SO2753
|
prolyl endopeptidase (EC 3.4.21.26)
|
||
|
Position: -144
Score: 4.2 Sequence: AAAGGTGAGCAATCTCACGTTT
Locus tag: swp_3605
Name: SO1539 Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1) |
|||
|
SO1539
|
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
|
||
|
Position: -175
Score: 4.4 Sequence: AATGTTGAGCGAGATCACATTT
Locus tag: swp_3387
Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: swp_3386
Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: swp_3385
Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: swp_3384
Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: swp_3383
Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: swp_3382
Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: swp_3381
Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
|||
|
atoB
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
|
||
|
mmsA
|
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
|
||
|
SO1679
|
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
|
||
|
SO1680
|
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
|
||
|
SO1681
|
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
|
||
|
mmsB
|
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
|
||
|
fabG
|
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
|
||
|
Position: -106
Score: 5.5 Sequence: AAATGTGATCGGAGTCACATTT
Locus tag: swp_0403
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATAA
Locus tag: swp_5075
Name: cytcB Funciton: Cytochrome c4 |
|||
|
cytcB
|
Cytochrome c4
|
||
|
Position: -93
Score: 4.2 Sequence: TATTTTGAAAAAAAGCACAAAT
Locus tag: swp_3524
Name: map Funciton: methionine aminopeptidase (EC 3.4.11.18) |
|||
|
map
|
methionine aminopeptidase (EC 3.4.11.18)
|
||
|
Position: -231
Score: 4.2 Sequence: AGGTGAGACGGTGATCACAATA
Locus tag: swp_1469
Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: swp_1470
Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB |
|||
|
cydA
|
cytochrome d ubiquinol oxidase, subunit I, CydA
|
||
|
cydB
|
cytochrome d ubiquinol oxidase, subunit II, CydB
|
||
|
Position: -111
Score: 3.8 Sequence: TTATTTGAGCTAGCGCTAATAA
Locus tag: swp_3802
Name: SO1326 Funciton: COG1242: Predicted Fe-S oxidoreductase |
|||
|
SO1326
|
COG1242: Predicted Fe-S oxidoreductase
|
||
|
Position: -96
Score: 4.7 Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: swp_5074a
Name: engB Funciton: GTP-binding protein EngB |
|||
|
engB
|
GTP-binding protein EngB
|
||
|
Position: -9
Score: 4.4 Sequence: ATATTTGATATGTACCACCTTA
Locus tag: swp_4588
Name: SO4154 Funciton: transcriptional regulator, LysR family |
|||
|
SO4154
|
transcriptional regulator, LysR family
|
||
|
Position: -84
Score: 3.5 Sequence: TTTTTTGCTGTTGTTAGCAACT
Position: -61
Score: 4.1 Sequence: AATTGATAACAAGATCACATTA
Locus tag: swp_2870
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
|||
|
hmgA
|
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
|
||
|
Position: -104
Score: 3.7 Sequence: TATTGCAAAGCGCCTCGCAAAT
Locus tag: swp_4927
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -86
Score: 4.2 Sequence: AAGTGTGATCTGCAGCTAACTT
Position: -25
Score: 4 Sequence: AAAGGTAATTGAAATCTCATAA
Locus tag: swp_5036
Name: SO4503 Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: swp_5037
Name: SO4502 Funciton: conserved domain protein |
|||
|
SO4503
|
formate dehydrogenase chain D (EC 1.2.1.2)
|
||
|
SO4502
|
conserved domain protein
|
||
|
Position: -40
Score: 4.3 Sequence: AAATGTAATCCGTATCGCAACA
Locus tag: swp_0402
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: swp_0400
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: swp_0399
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: swp_0398
Name: hemY Funciton: HemY domain-containing protein |
|||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemX
|
Homolog of E. coli HemX protein
|
||
|
hemY
|
HemY domain-containing protein
|
||
|
Position: 27
Score: 4.3 Sequence: AACTGTGAAAGGTATCACACAC
Locus tag: swp_1689
Name: SO2806 Funciton: hypothetical protein |
|||
|
SO2806
|
hypothetical protein
|
||
|
Position: -214
Score: 4 Sequence: TTGCGTGTTGTATGTCACCAAA
Position: -161
Score: 4.4 Sequence: AAATGTGATCGCGATCACTGCT
Locus tag: swp_3395
Name: ompW Funciton: outer membrane protein W precursor |
|||
|
ompW
|
outer membrane protein W precursor
|
||
|
Position: -161
Score: 4 Sequence: ATAAGCGATATAGCTCCCAATA
Locus tag: swp_4263
Name: SO0919 Funciton: Serine transporter, putative
Locus tag: swp_4262
Name: Sfri_0687 Funciton: L-serine dehydratase (EC 4.3.1.17) |
|||
|
SO0919
|
Serine transporter, putative
|
||
|
Sfri_0687
|
L-serine dehydratase (EC 4.3.1.17)
|
||
|
Position: -153
Score: 3.8 Sequence: TTTTTTGAACCTTATCAATAAA
Locus tag: swp_0756
Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor |
|||
|
sel1
|
Sel1 domain protein repeat-containing protein precursor
|
||
|
Position: -110
Score: 3.6 Sequence: TTTATTGACGATAGTCAAAAAA
Locus tag: swp_0563
Name: SO0572 Funciton: enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
SO0572
|
enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -310
Score: 4.7 Sequence: AAGCGTGACCTGTGTCACACTT
Locus tag: swp_2362
Name: null Funciton: TonB-dependent receptor |
|||
|
TonB-dependent receptor
|
|||
|
Position: -246
Score: 4.1 Sequence: TTATGTGCTCTAGCGCATGTTT
Locus tag: swp_4657
Name: mccA Funciton: cytochrome c, putative |
|||
|
mccA
|
cytochrome c, putative
|
||
|
Position: -132
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: swp_1167
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: swp_1168
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: swp_1169
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: swp_1170
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: swp_1171
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: swp_1172
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
|||
|
nqrA-2
|
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
|
||
|
nqrB-2
|
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
|
||
|
nqrC-2
|
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
|
||
|
nqrD-1
|
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
|
||
|
nqrE-2
|
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
|
||
|
nqrF-2
|
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
|
||
|
Position: -153
Score: 5 Sequence: ATATGTGATGATAATCAAAATT
Locus tag: swp_2289
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
fadD1
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -245
Score: 3.8 Sequence: CGATGTGATCTTGATCTGGTTT
Position: -215
Score: 3.9 Sequence: ATGTGTGATATTAATCATAGGT
Locus tag: swp_4512
Name: SO3895 Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL |
|||
|
SO3895
|
HesA/MoeB/ThiF family protein related to EC-YgdL
|
||
|
Position: -74
Score: 4.3 Sequence: ATATTTGATTCATCTCATATAC
Locus tag: swp_4791
Name: SO4567 Funciton: transcriptional regulator, AsnC family
Locus tag: swp_4792
Name: menD Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: swp_4793
Name: SO4574 Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: swp_4795
Name: menC Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: swp_4796
Name: SO4576 Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) |
|||
|
SO4567
|
transcriptional regulator, AsnC family
|
||
|
menD
|
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
|
||
|
SO4574
|
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
|
||
|
menC
|
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
|
||
|
SO4576
|
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
|
||
|
Position: -177
Score: 4.2 Sequence: ATTTGTGAGCTAGCTTGTATTT
Locus tag: swp_0132
Name: hutC Funciton: histidine utilization repressor
Locus tag: swp_0133
Name: hutU Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: swp_0134
Name: hutH Funciton: histidine ammonia-lyase (EC 4.3.1.3) |
|||
|
hutC
|
histidine utilization repressor
|
||
|
hutU
|
urocanate hydratase (EC 4.2.1.49)
|
||
|
hutH
|
histidine ammonia-lyase (EC 4.3.1.3)
|
||
|
Position: -311
Score: 3.7 Sequence: ATTTGCGAGGCGCTTTGCAATA
Position: -261
Score: 3.6 Sequence: AAAATTGACTTTAGTCAAAGAT
Locus tag: swp_4926
Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70) |
|||
|
prlC
|
Oligopeptidase A (EC 3.4.24.70)
|
||
|
Position: -72
Score: 3.7 Sequence: ATTATTGAGCTATAGCTCAAAT
Position: -70
Score: 4.3 Sequence: TATTGAGCTATAGCTCAAATAT
Locus tag: swp_3151
Name: putP Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter |
|||
|
putP
|
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
|
||
|
Position: -82
Score: 4.1 Sequence: AAGTGCGATCTCTGTCGCATTC
Locus tag: swp_3037
Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5) |
|||
|
cdd
|
cytidine deaminase (EC 3.5.4.5)
|
||
|
Position: -122
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: swp_3140
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: swp_3139
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|||
|
fadI
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
|
||
|
fadJ
|
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
Position: -105
Score: 4.1 Sequence: TTCTGCGACTTACTTCAAATAA
Locus tag: swp_0644
Name: modE Funciton: molybdate-binding domain of ModE |
|||
|
modE
|
molybdate-binding domain of ModE
|
||
|
Position: -80
Score: 4.3 Sequence: TAATGTGCCCCAAGTTACATTT
Locus tag: swp_4930
Name: swp_4930 Funciton: transcriptional regulator, LysR family |
|||
|
swp_4930
|
transcriptional regulator, LysR family
|
||
|
Position: -156
Score: 4.6 Sequence: TTTTGTTACACAGATCGCATAT
Locus tag: swp_0532
Name: SO0543 Funciton: hypothetical protein |
|||
|
SO0543
|
hypothetical protein
|
||
|
Position: -76
Score: 5 Sequence: AACTGTGATCTGGTTAACAAAA
Locus tag: swp_1650
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: swp_1651
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
|||
|
phhA
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
|
||
|
phhB
|
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
|
||
|
Position: -221
Score: 4.3 Sequence: TAGCTTGATCTAGATCAACTTT
Position: -178
Score: 4.4 Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: swp_2572
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: swp_2573
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: swp_2574
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: swp_2575
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
|||
|
ccoN
|
Cbb3-type cytochrome c oxidase, subunit I, CcoN
|
||
|
ccoO
|
Cbb3-type cytochrome c oxidase, subunit II, CcoO
|
||
|
ccoQ
|
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
|
||
|
ccoP
|
Cbb3-type cytochrome c oxidase, subunit III, CcoP
|
||
|
Position: -21
Score: 4.1 Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: swp_1711
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -115
Score: 4.9 Sequence: TAATGTGATCTTGTTATCAATT
Locus tag: swp_2869
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
|||
|
hmgR
|
Tyrosine degradation transcriptional regulator, LysR family
|
||
|
Position: -127
Score: 4.4 Sequence: TTATGTGATTAGTCGCACACTG
Locus tag: swp_0035
Name: fadB Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: swp_0034
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|||
|
fadB
|
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
fadA
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Position: -311
Score: 4 Sequence: AGTTGTTAAGTCGCTCTCAATT
Locus tag: swp_1953
Name: Spea_1673 Funciton: hypothetical protein |
|||
|
Spea_1673
|
hypothetical protein
|
||
|
Position: -106
Score: 3.8 Sequence: TAGGGTGAGCAAAGTCACGATT
Position: -94
Score: 3.9 Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0428
Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0429
Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0430
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_0431
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
frdC1
|
Fumarate reductase cytochrome b subunit
|
||
|
fdrC2
|
Fumarate reductase cytochrome b subunit
|
||
|
frdA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -140
Score: 5 Sequence: TAGTGTGATTTAGCTCACGCTA
Locus tag: swp_1653
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: swp_1654
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|||
|
fahA
|
Fumarylacetoacetate hydrolase family protein
|
||
|
maiA
|
Maleylacetoacetate isomerase (EC 5.2.1.2)
|
||
|
Position: -76
Score: 4.6 Sequence: AAACGTGATTTAGATCACGACT
Locus tag: swp_3757
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
|||
|
yfiA-2
|
Ribosome hibernation protein YfiA
|
||
|
Position: -104
Score: 4.1 Sequence: AACCTTGATCTTAATCATAATT
Locus tag: swp_4367
Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein
Locus tag: swp_4368
Name: Sfri_4034 Funciton: FMN-binding domain-containing protein
Locus tag: swp_4369
Name: Sfri_4033 Funciton: PepSY-associated TM helix domain-containing protein |
|||
|
Sfri_4035
|
Conserved hypothetical signal peptide protein
|
||
|
Sfri_4034
|
FMN-binding domain-containing protein
|
||
|
Sfri_4033
|
PepSY-associated TM helix domain-containing protein
|
||
|
Position: -318
Score: 4.3 Sequence: TGAGGTGATGCATATCATAAAA
Locus tag: swp_4060
Name: swp_4060 Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A |
|||
|
swp_4060
|
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
|
||
|
Position: -322
Score: 3.9 Sequence: TAATGCAATTGGTATTACAATA
Locus tag: swp_4339
Name: Sputcn32_0834 Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: swp_4340
Name: asnC Funciton: regulatory protein AsnC |
|||
|
Sputcn32_0834
|
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
|
||
|
asnC
|
regulatory protein AsnC
|
||
|
Position: -184
Score: 4.3 Sequence: TAGTTTGATGGAGCGCACGTTT
Locus tag: swp_2923
Name: null Funciton: cytochrome c3 |
|||
|
cytochrome c3
|
|||
|
Position: -191
Score: 4.4 Sequence: AACTGTGAAACAACTCACAAAG
Locus tag: swp_1238
Name: psrA Funciton: polysulfide reductase, subunit A
Locus tag: swp_1239
Name: psrB Funciton: polysulfide reductase, subunit B
Locus tag: swp_1240
Name: psrC Funciton: polysulfide reductase, subunit C |
|||
|
psrA
|
polysulfide reductase, subunit A
|
||
|
psrB
|
polysulfide reductase, subunit B
|
||
|
psrC
|
polysulfide reductase, subunit C
|
||
|
Position: -308
Score: 4.2 Sequence: TTATGTGACAAATCTCTCAACT
Position: -185
Score: 4.6 Sequence: CAGTGTGACGTAGATCACGCTT
Locus tag: swp_3272
Name: mtrD Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE Funciton: outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA |
|||
|
mtrD
|
periplasmic decaheme cytochrome c, MtrD
|
||
|
mtrE
|
outer membrane protein, MtrE
|
||
|
mtrF
|
surface localized decaheme cytochrome c lipoprotein, MtrF
|
||
|
omcA
|
surface localized decaheme cytochrome c lipoprotein, OmcA
|
||
|
Position: -180
Score: 4.3 Sequence: TTTAGTGATAGAGCACACAGAA
Locus tag: swp_4302
Name: swp_4302 Funciton: hypothetical protein |
|||
|
swp_4302
|
hypothetical protein
|
||
|
Position: -276
Score: 3.7 Sequence: TATTTCAATAAGGATCAAATAT
Locus tag: swp_3472
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: swp_3471
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
|||
|
etfB
|
electron transfer flavoprotein, beta subunit
|
||
|
etfA
|
electron transfer flavoprotein, alpha subunit
|
||
|
Position: -210
Score: 4.5 Sequence: ATGTGTGATCTGTATCACTCAG
Locus tag: swp_3737
Name: SO3541 Funciton: sodium:alanine symporter family protein |
|||
|
SO3541
|
sodium:alanine symporter family protein
|
||
|
Position: -147
Score: 4.1 Sequence: CAGCGTGATCTGCCGCACGTTT
Locus tag: swp_4077
Name: purT Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) |
|||
|
purT
|
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
|
||
|
Position: -268
Score: 4.5 Sequence: ATATTAGATCTAAATCACACTT
Position: -238
Score: 3.9 Sequence: TAACGTTAGTTACCACACAAAA
Locus tag: swp_3549
Name: SO1603 Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: swp_3550
Name: SO1602 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: swp_3551
Name: Sputcn32_1325 Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: swp_3553
Name: SO1599 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC |
|||
|
SO1603
|
putative transcriptional regulator, inferred for PFA pathway
|
||
|
SO1602
|
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
|
||
|
Sputcn32_1325
|
omega-3 polyunsaturated fatty acid synthase PfaB
|
||
|
SO1599
|
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
|
||
|
Position: -150
Score: 4.1 Sequence: AAACTTGATCTAGCCCACAATC
Locus tag: swp_4514
Name: omp35 Funciton: outer membrane porin |
|||
|
omp35
|
outer membrane porin
|
||
|
Position: -87
Score: 4.2 Sequence: GAATGTGATCTAGCTCACAGGT
Locus tag: swp_3059
Name: SO2589 Funciton: isopenicillin N synthase |
|||
|
SO2589
|
isopenicillin N synthase
|
||
|
Position: -309
Score: 4.2 Sequence: TTTATTGATAAGGTTCAAAAAA
Locus tag: swp_0755
Name: crp Funciton: Cyclic AMP receptor protein Crp |
|||
|
crp
|
Cyclic AMP receptor protein Crp
|
||
|
Position: -212
Score: 5 Sequence: ATTTGTGATTTAAATCGCGTTA
Position: -112
Score: 3.8 Sequence: ATATTCGAACTACATCAAATTG
Locus tag: swp_2043
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: swp_2042
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: swp_2041
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: swp_2040
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: swp_2039
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
|||
|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
|
||
|
ccmC
|
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
Position: -166
Score: 4.2 Sequence: AAGTATGACTTACTTAACAAAA
Locus tag: swp_5018
Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
|||
|
SO4520
|
Oxygen-independent coproporphyrinogen III oxidase, putative
|
||
|
Position: -97
Score: 3.3 Sequence: TTATATAATGATTTTTATATTT
Locus tag: swp_4118
Name: null Funciton: hypothetical protein
Locus tag: swp_4117
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: swp_4116
Name: nrfC Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: swp_4115
Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD |
|||
|
hypothetical protein
|
|||
|
nrfB
|
Cytochrome c-type protein NrfB precursor
|
||
|
nrfC
|
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
|
||
|
nrfD-2
|
nitrite reductase, quinol dehydrogenase component, NrfD
|
||
|
Position: -94
Score: 3.9 Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0429
Name: fdrC Funciton: fumarate reductase cytochrome b subunit
Locus tag: swp_0430
Name: frdA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_0431
Name: frdB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
fdrC
|
fumarate reductase cytochrome b subunit
|
||
|
frdA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -153
Score: 3.6 Sequence: ACTTGTGAAGTGTATCATTGTT
Locus tag: swp_2753
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
|||
|
ydhD
|
Probable monothiol glutaredoxin ydhD
|
||
|
Position: -106
Score: 4.4 Sequence: TAAAGTGAGGTAGAGCACATTC
Locus tag: swp_2053
Name: ppc Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: swp_2052
Name: yceB Funciton: uncharacterized lipoprotein YceB precursor |
|||
|
ppc
|
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
|
||
|
yceB
|
uncharacterized lipoprotein YceB precursor
|
||
|
Position: -113
Score: 4.5 Sequence: GATTGTGATCAGTATCAAACAA
Locus tag: swp_4749
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
|||
|
lpdA
|
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
|
||
|
Position: -177
Score: 4.1 Sequence: TGATGTGATAAAAAGCACTCAT
Locus tag: swp_3409
Name: null Funciton: hypothetical protein swp_3409
Locus tag: swp_3408
Name: yfiA-1 Funciton: ribosomal subunit interface protein |
|||
|
hypothetical protein swp_3409
|
|||
|
yfiA-1
|
ribosomal subunit interface protein
|
||
|
Position: -306
Score: 4 Sequence: TAAGGTTAACCTGATCACACTT
Position: -88
Score: 4.8 Sequence: AAACATGATCTAACTCACAAAT
Locus tag: swp_4703
Name: SO4134 Funciton: Protein of unknown function DUF465 |
|||
|
SO4134
|
Protein of unknown function DUF465
|
||
|
Position: -108
Score: 4.7 Sequence: AAAAGTGATATTGCTCTCAAAT
Locus tag: swp_1821
Name: Swoo_2741 Funciton: Alkyl hydroperoxide reductase subunit C-like protein |
|||
|
Swoo_2741
|
Alkyl hydroperoxide reductase subunit C-like protein
|
||
|
Position: -133
Score: 4 Sequence: GAAAGTGATCGAGCTCAACTAT
Locus tag: swp_4577
Name: SO4142 Funciton: cytochrome c family protein
Locus tag: swp_4578
Name: SO4143 Funciton: hypothetical protein
Locus tag: swp_4579
Name: SO4144 Funciton: octaheme tetrathionate reductase |
|||
|
SO4142
|
cytochrome c family protein
|
||
|
SO4143
|
hypothetical protein
|
||
|
SO4144
|
octaheme tetrathionate reductase
|
||
|
Position: -222
Score: 4.3 Sequence: TGAGGTGATTAGTGTCACAAAA
Locus tag: swp_5009
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: swp_5008
Name: moaB Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: swp_5007
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: swp_5006
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: swp_5005
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: swp_5004
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: swp_5002
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: swp_5001
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
|||
|
moaA
|
molybdenum cofactor biosynthesis protein MoaA
|
||
|
moaB
|
molybdenum cofactor biosynthesis protein MoaB
|
||
|
moaC
|
molybdenum cofactor biosynthesis protein MoaC
|
||
|
moaD
|
molybdenum cofactor biosynthesis protein MoaD
|
||
|
moaE
|
molybdenum cofactor biosynthesis protein MoaE
|
||
|
modA
|
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
|
||
|
modB
|
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
|
||
|
modC
|
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
|
||
|
Position: -276
Score: 3.8 Sequence: ATTTGAGATCTAAAAAAAAATA
Locus tag: swp_4806
Name: cymA Funciton: membrane anchored tetraheme cytochrome c, CymA |
|||
|
cymA
|
membrane anchored tetraheme cytochrome c, CymA
|
||
|
Position: -46
Score: 3.9 Sequence: AAAACAGATCTAAATCACAAAA
Locus tag: swp_4100
Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37) |
|||
|
mdh
|
malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -69
Score: 5.2 Sequence: AAATGTGATCTGTCTTACATTT
Locus tag: swp_3928
Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: swp_3930
Name: lipA Funciton: Lipoate synthase |
|||
|
lipB
|
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
|
||
|
lipA
|
Lipoate synthase
|
||
|
Position: -97
Score: 3.5 Sequence: AATTGTGACGTAGACCCGCAAA
Locus tag: swp_2312
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE2
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -286
Score: 4.5 Sequence: AATCGTGACTTTGCTCACCCTA
Locus tag: swp_0427
Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: swp_0426
Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: swp_0425
Name: fis Funciton: DNA-binding protein Fis |
|||
|
prmA
|
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
|
||
|
nifR3
|
tRNA dihydrouridine synthase B (EC 1.-.-.-)
|
||
|
fis
|
DNA-binding protein Fis
|
||
|
Position: -105
Score: 4.5 Sequence: AAAGGTGAACTAGATCACAAAG
Locus tag: swp_1085
Name: Shew_1222 Funciton: hypothetical protein |
|||
|
Shew_1222
|
hypothetical protein
|
||
|
Position: -177
Score: 3.9 Sequence: ACCTATGATTAATATCACACAT
Locus tag: swp_4513
Name: Shewana3_0734 Funciton: outer membrane porin, putative |
|||
|
Shewana3_0734
|
outer membrane porin, putative
|
||
|
Position: -237
Score: 4.5 Sequence: CTGAGTGATACAGATCACACAT
Position: -96
Score: 3.8 Sequence: AAATAAGATACAGGACACATTT
Locus tag: swp_3738
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
|||
|
phk
|
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
|
||
|
Position: -366
Score: 4.9 Sequence: AGTCGTGATCTAAATCACGTTT
Locus tag: swp_3756
Name: SO3421 Funciton: b-type cytochrome, putative |
|||
|
SO3421
|
b-type cytochrome, putative
|
||
|
Position: -113
Score: 4 Sequence: GAAGTTGATCTTGCTCACAAAA
Locus tag: swp_1052
Name: SO3683 Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: swp_1051
Name: SO3684 Funciton: transcriptional regulator, TetR family |
|||
|
SO3683
|
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
|
||
|
SO3684
|
transcriptional regulator, TetR family
|
||
|
Position: -176
Score: 4.4 Sequence: TTTTGTGACACTAATCACCTCA
Locus tag: swp_5010
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
|||
|
etfD
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
|
||
|
Position: -220
Score: 3.8 Sequence: GAAAGTGACTTAAATCGCGTTT
Locus tag: swp_1671
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -42
Score: 4.4 Sequence: TAAGGTGATCTCTTTCATAGTT
Locus tag: swp_3762
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: swp_3761
Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|||
|
hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
|
||
|
hcr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |