Regulon of Crp in Shewanella piezotolerans WP3

Properties
Regulator type:	Transcription factor
TF locus tag:	swp_0755
Regulator family:	CRP
Regulation mode:	repressor (activator)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Regulog:	Crp - Shewanellaceae
Statistics of regulated genes:
- Genes	262
- Operons	136
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 2713 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Cyclic 3',5'-AMP
By pathway - Carbon catabolism

Regulated operons
	Locus Tag	Name	Function
Position: -162 Score: 4.4 Sequence: AAATGTGATGTTTAACTCAAAG Locus tag: swp_2633 Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
	swp_2633	fumB	Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -181 Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA Locus tag: swp_4724 Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) Locus tag: swp_4725 Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
	swp_4724	purH	IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
	swp_4725	purD	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -293 Score: 4.6 Sequence: AAACGTGAGATTGCTCACCTTT Locus tag: swp_3606 Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
	swp_3606	icd	Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -95 Score: 4.4 Sequence: AAATATTACCCCGATCACATAA Locus tag: swp_5075 Name: cytcB Funciton: diheme cytochrome c4
	swp_5075	cytcB	diheme cytochrome c4
Position: -283 Score: 4.4 Sequence: AAGTATGAATCAGATCACACTT Position: -177 Score: 3.7 Sequence: AACACTGAGATTAATCACATAA Position: -101 Score: 3.7 Sequence: TTTCGTAAAGCTAAACACAATA Locus tag: swp_4741 Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
	swp_4741	yniC	2-deoxyglucose-6-phosphate hydrolase YniC
Position: -67 Score: 4.4 Sequence: AAATTTGATCTGCCGCTCAATT Locus tag: swp_3422 Name: fadE Funciton: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	swp_3422	fadE	acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -184 Score: 4.4 Sequence: AACTGTGATCTCTATCACCGAC Locus tag: swp_3568 Name: SO1482 Funciton: tonB-dependent receptor, putative
	swp_3568	SO1482	tonB-dependent receptor, putative
Position: -217 Score: 4.4 Sequence: ATTCGTGCTGAAAATCAAATTT Locus tag: swp_4772 Name: pilZ Funciton: type IV pilus assembly PilZ
	swp_4772	pilZ	type IV pilus assembly PilZ
Position: -143 Score: 4.3 Sequence: ATTTGTGATCCATGTGGCAATT Locus tag: swp_1858 Name: SO2637 Funciton: hypothetical protein
	swp_1858	SO2637	hypothetical protein
Position: -127 Score: 3.9 Sequence: AAAGTTGTCATAGATCACATTT Locus tag: swp_0315 Name: SO0355 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) Locus tag: swp_0314 Name: SO0354 Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
	swp_0315	SO0355	long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	swp_0314	SO0354	inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
Position: -120 Score: 4.3 Sequence: ATGAGTGATCTTGTTCATAGTA Locus tag: swp_2077 Name: SO0296 Funciton: integral membrane domain protein
	swp_2077	SO0296	integral membrane domain protein
Position: -139 Score: 4.8 Sequence: AAGTGTGATCTAAATCTAATTA Locus tag: swp_1230 Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4) Locus tag: swp_1231 Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7) Locus tag: swp_1232 Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
	swp_1230	deoA	thymidine phosphorylase (EC 2.4.2.4)
	swp_1231	deoB	phosphopentomutase (EC 5.4.2.7)
	swp_1232	deoD-2	purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -64 Score: 4.1 Sequence: AAACGTGATCAACAGCATCTTT Locus tag: swp_4510 Name: Sputcn32_0777 Funciton: hypothetical protein
	swp_4510	Sputcn32_0777	hypothetical protein
Position: -119 Score: 4.5 Sequence: AAATGTTATCTCTGTCAAACAA Locus tag: swp_2516 Name: SO1419 Funciton: lipoprotein, putative Locus tag: swp_2517 Name: SO1420 Funciton: outer membrane porin, putative
	swp_2516	SO1419	lipoprotein, putative
	swp_2517	SO1420	outer membrane porin, putative
Position: -42 Score: 3.8 Sequence: TACATTGATATCTATCACTATT Locus tag: swp_3020 Name: yceI Funciton: hypothetical protein Locus tag: swp_3019 Name: SO2891 Funciton: type IIA topoisomerase, B subunit
	swp_3020	yceI	hypothetical protein
	swp_3019	SO2891	type IIA topoisomerase, B subunit
Position: -131 Score: 4.2 Sequence: AACTATGATCTGGTTCTAATTT Locus tag: swp_0793 Name: petA Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) Locus tag: swp_0794 Name: petB Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) Locus tag: swp_0795 Name: petC Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit Locus tag: swp_0796 Name: sspA Funciton: stringent starvation protein A Locus tag: swp_0797 Name: sspB Funciton: stringent starvation protein B
	swp_0793	petA	ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
	swp_0794	petB	ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
	swp_0795	petC	ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
	swp_0796	sspA	stringent starvation protein A
	swp_0797	sspB	stringent starvation protein B
Position: -271 Score: 4.4 Sequence: TTCCTTGATCGAGATCACACAA Locus tag: swp_3538 Name: null Funciton: hypothetical protein
	swp_3538		hypothetical protein
Position: -21 Score: 4.2 Sequence: AAGTGTGATCCGCAACTAAATT Locus tag: swp_1867 Name: null Funciton: hypothetical protein swp_1867 Locus tag: swp_1868 Name: icd Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
	swp_1867		hypothetical protein swp_1867
	swp_1868	icd	isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -156 Score: 4 Sequence: ATTCGTGACCTAGATTAGACTT Locus tag: swp_0168 Name: SO0141 Funciton: sensory box/GGDEF family protein
	swp_0168	SO0141	sensory box/GGDEF family protein
Position: -239 Score: 3.8 Sequence: TTTAATAATATAGATCATAAAA Position: -143 Score: 4.1 Sequence: TATTTTGATATTGATGAAATTA Position: -2 Score: 4 Sequence: ATATGGAATTTCTATCACCTTT Locus tag: swp_2809 Name: ycbW Funciton: probable membrane protein YcbW
	swp_2809	ycbW	probable membrane protein YcbW
Position: -100 Score: 4.1 Sequence: CTCTATGATATAGCTCACAGAT Locus tag: swp_1789 Name: Sfri_2271 Funciton: permease of the major facilitator superfamily Locus tag: swp_1790 Name: Sfri_2272 Funciton: hypothetical protein Locus tag: swp_1791 Name: Sfri_2273 Funciton: nitrogen regulatory protein P-II Locus tag: swp_1792 Name: Sfri_2274 Funciton: hypothetical protein
	swp_1789	Sfri_2271	permease of the major facilitator superfamily
	swp_1790	Sfri_2272	hypothetical protein
	swp_1791	Sfri_2273	nitrogen regulatory protein P-II
	swp_1792	Sfri_2274	hypothetical protein
Position: -148 Score: 4 Sequence: TTATGAGATTTCAATTACCTTT Position: -87 Score: 3.8 Sequence: AAGTTAGCTGCAGATCACACTT Locus tag: swp_5035 Name: null Funciton: hypothetical protein swp_5035 Locus tag: swp_5034 Name: null Funciton: hypothetical protein Locus tag: swp_5033 Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function Locus tag: swp_5032 Name: SO4506 Funciton: iron-sulfur cluster-binding protein Locus tag: swp_5031 Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone Locus tag: swp_5030 Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein Locus tag: swp_5029 Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2) Locus tag: swp_5028 Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2) Locus tag: swp_5027 Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
	swp_5035		hypothetical protein swp_5035
	swp_5034		hypothetical protein
	swp_5033	SO4505	hypothetical protein probably related to Formate dehydrogenase function
	swp_5032	SO4506	iron-sulfur cluster-binding protein
	swp_5031	SO4507	putative formate dehydrogenase-specific chaperone
	swp_5030	SO4508	formate dehydrogenase subunit or accessory protein
	swp_5029	SO4509	formate dehydrogenase-O, major subunit (EC 1.2.1.2)
	swp_5028	fdhB-1	formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
	swp_5027	SO4511	formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -181 Score: 3.8 Sequence: TATAGCGATAAAGTTAAAATTT Locus tag: swp_0481 Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
	swp_0481	SO4118	NADP-dependent malic enzyme (EC 1.1.1.40)
Position: -258 Score: 4.3 Sequence: TTTATTGATCTAGATCTAATAA Locus tag: swp_4010 Name: cadC Funciton: transcriptional regulator-related protein Locus tag: swp_4009 Name: SO0941 Funciton: hypothetical protein
	swp_4010	cadC	transcriptional regulator-related protein
	swp_4009	SO0941	hypothetical protein
Position: -113 Score: 4.9 Sequence: TTTTTTGATCTAGTCCACATAT Locus tag: swp_0182 Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
	swp_0182	pckA	phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -157 Score: 4.2 Sequence: TATTGTGACCGGTTACGCAGTA Locus tag: swp_4120 Name: Sama_2899 Funciton: transcriptional regulator, LysR family
	swp_4120	Sama_2899	transcriptional regulator, LysR family
Position: -4 Score: 4.6 Sequence: TACTGTGATCGATATCACGTCT Locus tag: swp_4346 Name: SO3987 Funciton: hypothetical protein
	swp_4346	SO3987	hypothetical protein
Position: -248 Score: 4.2 Sequence: TAACGTGCTAAAGCTCACGAAA Locus tag: swp_4239 Name: cadC Funciton: transcriptional regulator-related protein
	swp_4239	cadC	transcriptional regulator-related protein
Position: -222 Score: 3.7 Sequence: ATGCGCGATTTGCATTACCTTT Locus tag: swp_3965 Name: fadD-2 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	swp_3965	fadD-2	long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -100 Score: 5.7 Sequence: TTTTGTGATCTGCCTCACAAAT Locus tag: swp_0564 Name: Sama_3134 Funciton: membrane protein
	swp_0564	Sama_3134	membrane protein
Position: -119 Score: 4.3 Sequence: TTTTATGATATGCATCACCTCA Locus tag: swp_4059 Name: cobA Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Locus tag: swp_4058 Name: cysD Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) Locus tag: swp_4057 Name: cysN Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) Locus tag: swp_4056 Name: Shew_1424 Funciton: sulfate permease, Trk-type Locus tag: swp_4055 Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25)
	swp_4059	cobA	uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
	swp_4058	cysD	sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
	swp_4057	cysN	sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
	swp_4056	Shew_1424	sulfate permease, Trk-type
	swp_4055	cysC	adenylylsulfate kinase (EC 2.7.1.25)
Position: -204 Score: 3.9 Sequence: TTTTGTTATGACGGTTGCATTT Locus tag: swp_1592 Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25)
	swp_1592	cysC	adenylylsulfate kinase (EC 2.7.1.25)
Position: -131 Score: 3.8 Sequence: AAATGTGATCAGAACTGCGTTA Locus tag: swp_4841 Name: yhgI Funciton: NfuA Fe-S protein maturation
	swp_4841	yhgI	NfuA Fe-S protein maturation
Position: -20 Score: 4.6 Sequence: AACTGTGACCTAGTTCACGGAT Locus tag: swp_2955 Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit Locus tag: swp_2953 Name: SO1927.1 Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein Locus tag: swp_2952 Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: swp_2950 Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Locus tag: swp_2949 Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) Locus tag: swp_2948 Name: sucB Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) Locus tag: swp_2947 Name: sucC Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Locus tag: swp_2946 Name: sucD Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
	swp_2955	sdhC	Succinate dehydrogenase cytochrome b-556 subunit
	swp_2953	SO1927.1	Succinate dehydrogenase hydrophobic membrane anchor protein
	swp_2952	sdhA	succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	swp_2950	sdhB	succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	swp_2949	sucA	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
	swp_2948	sucB	dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
	swp_2947	sucC	succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
	swp_2946	sucD	succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -137 Score: 3.9 Sequence: AAAGGTGTCGCTCGTCACATTT Locus tag: swp_0809 Name: SO3774 Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
	swp_0809	SO3774	proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -150 Score: 4 Sequence: AAATGTGAGCAACAACACGTTC Locus tag: swp_3958 Name: nrfA Funciton: cytochrome c552 precursor (EC 1.7.2.2)
	swp_3958	nrfA	cytochrome c552 precursor (EC 1.7.2.2)
Position: -269 Score: 4.7 Sequence: AAGTGTGACGAACATAACATTA Locus tag: swp_4939 Name: fixA Funciton: electron transfer flavoprotein, beta subunit FixA Locus tag: swp_4940 Name: fixB Funciton: electron transfer flavoprotein, alpha subunit FixB Locus tag: swp_4941 Name: fixC Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-) Locus tag: swp_4942 Name: fixX Funciton: ferredoxin-like protein FixX
	swp_4939	fixA	electron transfer flavoprotein, beta subunit FixA
	swp_4940	fixB	electron transfer flavoprotein, alpha subunit FixB
	swp_4941	fixC	probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
	swp_4942	fixX	ferredoxin-like protein FixX
Position: -79 Score: 4.3 Sequence: TTTTGTGAGCAAGATCAACTTC Locus tag: swp_1054 Name: null Funciton: hypothetical protein Locus tag: swp_1055 Name: SO3681 Funciton: universal stress protein family
	swp_1054		hypothetical protein
	swp_1055	SO3681	universal stress protein family
Position: -123 Score: 3.8 Sequence: TTATGCGCCCTTCATCACCCTA Locus tag: swp_3241 Name: nadC Funciton: di-and tricarboxylate transporter
	swp_3241	nadC	di-and tricarboxylate transporter
Position: -141 Score: 4.7 Sequence: TTCTGTGATTCAGGTCGCAAAT Locus tag: swp_3809 Name: Sbal_1323 Funciton: HTH-type transcriptional regulator BetI Locus tag: swp_3810 Name: Sbal_1324 Funciton: betaine aldehyde dehydrogenase (EC 1.2.1.8) Locus tag: swp_3811 Name: Sbal_1325 Funciton: choline dehydrogenase (EC 1.1.99.1) Locus tag: swp_3812 Name: null Funciton: hypothetical protein swp_3812 Locus tag: swp_3813 Name: Sden_0716 Funciton: predicted choline transporter BetT-II Locus tag: swp_3814 Name: Sbal_1327 Funciton: conserved hypothetical protein 2001 Locus tag: swp_3815 Name: marR Funciton: transcriptional regulator, MarR family
	swp_3809	Sbal_1323	HTH-type transcriptional regulator BetI
	swp_3810	Sbal_1324	betaine aldehyde dehydrogenase (EC 1.2.1.8)
	swp_3811	Sbal_1325	choline dehydrogenase (EC 1.1.99.1)
	swp_3812		hypothetical protein swp_3812
	swp_3813	Sden_0716	predicted choline transporter BetT-II
	swp_3814	Sbal_1327	conserved hypothetical protein 2001
	swp_3815	marR	transcriptional regulator, MarR family
Position: -105 Score: 4.4 Sequence: TTGTTTGACAGAGATAACATTT Locus tag: swp_2515 Name: apbE Funciton: thiamin biosynthesis lipoprotein ApbE
	swp_2515	apbE	thiamin biosynthesis lipoprotein ApbE
Position: -97 Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT Locus tag: swp_3141 Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon Locus tag: swp_3143 Name: SO3091 Funciton: Conserved hypothetical protein Locus tag: swp_3144 Name: null Funciton: hypothetical protein Locus tag: swp_3145 Name: SO3093 Funciton: von Willebrand factor type A domain protein Locus tag: swp_3146 Name: SO3094 Funciton: TPR domain protein in aerotolerance operon Locus tag: swp_3148 Name: SO3095 Funciton: hypothetical protein
	swp_3141	SO3090	MoxR-like ATPase in aerotolerance operon
	swp_3143	SO3091	Conserved hypothetical protein
	swp_3144		hypothetical protein
	swp_3145	SO3093	von Willebrand factor type A domain protein
	swp_3146	SO3094	TPR domain protein in aerotolerance operon
	swp_3148	SO3095	hypothetical protein
Position: -98 Score: 4.6 Sequence: TCATTTGACTTAGATCACAAAT Locus tag: swp_3798 Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1)
	swp_3798	cyaC	Adenylate cyclase (EC 4.6.1.1)
Position: -96 Score: 4 Sequence: TTTTGTGCGCACCTTCAAACTT Locus tag: swp_2171 Name: ygbA Funciton: nitrosative stress induced protein
	swp_2171	ygbA	nitrosative stress induced protein
Position: -185 Score: 3.7 Sequence: AAACGCGATTTAAGTCACTTTC Locus tag: swp_1670 Name: SO3120 Funciton: oxidoreductase, Gfo/Idh/MocA family
	swp_1670	SO3120	oxidoreductase, Gfo/Idh/MocA family
Position: -117 Score: 4.3 Sequence: TGTTGTGCGCGAGTTCACATTG Locus tag: swp_5150 Name: SO4743 Funciton: ferrichrome-iron receptor Locus tag: swp_5149 Name: deoR Funciton: transcriptional regulator of glmS gene, DeoR family Locus tag: swp_5148 Name: glmS Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
	swp_5150	SO4743	ferrichrome-iron receptor
	swp_5149	deoR	transcriptional regulator of glmS gene, DeoR family
	swp_5148	glmS	glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Position: -140 Score: 4.1 Sequence: AACTGGTATTTTGATCACATTT Locus tag: swp_0747 Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) Locus tag: swp_0748 Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109) Locus tag: swp_0749 Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Locus tag: swp_0750 Name: SO0620 Funciton: FIG008480: hypothetical protein
	swp_0747	astC	Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
	swp_0748	astA	Arginine N-succinyltransferase (EC 2.3.1.109)
	swp_0749	astD	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
	swp_0750	SO0620	FIG008480: hypothetical protein
Position: -77 Score: 4.6 Sequence: TATAGTGATCTCAATCACAGCT Locus tag: swp_0358 Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
	swp_0358	ilvC	Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -231 Score: 4.4 Sequence: CAATTTGATGTAGTTCGAATAT Position: -131 Score: 4.8 Sequence: TAACGCGATTTAAATCACAAAT Locus tag: swp_2044 Name: scyA Funciton: cytochrome c-type protein
	swp_2044	scyA	cytochrome c-type protein
Position: -140 Score: 3.8 Sequence: ATTTATACTCTACATCATATTT Locus tag: swp_4101 Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
	swp_4101	argR	arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -245 Score: 3.9 Sequence: TTATGTGATTAATCTCAGTGTT Position: -139 Score: 4.9 Sequence: AAGTGTGATCTGATTCATACTT Locus tag: swp_4740 Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
	swp_4740	acnB	aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -124 Score: 3.9 Sequence: TTTTGTGAGGTAGGTAAAGGTA Position: -77 Score: 3.7 Sequence: TGATCTGATTCAATTAAAAATA Locus tag: swp_4046 Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) Locus tag: swp_4045 Name: SO3719 Funciton: hypothetical protein
	swp_4046	hemG	protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
	swp_4045	SO3719	hypothetical protein
Position: -310 Score: 4.7 Sequence: ATTTGTGAGTTAGATCATGTTT Position: -92 Score: 4.6 Sequence: AAGTGTGATCAGGTTAACCTTA Locus tag: swp_4702 Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3)
	swp_4702	udp	Uridine phosphorylase (EC 2.4.2.3)
Position: -77 Score: 4.1 Sequence: ATTTGAGAGCAATATCACTTTT Locus tag: swp_1820 Name: SO2757 Funciton: Histidine permease YuiF
	swp_1820	SO2757	Histidine permease YuiF
Position: -280 Score: 4.6 Sequence: AAGCGTGATCTACGTCACACTG Position: -157 Score: 4.2 Sequence: AGTTGAGAGATTTGTCACATAA Locus tag: swp_3271 Name: feoA Funciton: Ferrous iron transport protein A Locus tag: swp_3270 Name: feoB Funciton: Ferrous iron transport protein B
	swp_3271	feoA	Ferrous iron transport protein A
	swp_3270	feoB	Ferrous iron transport protein B
Position: -248 Score: 3.6 Sequence: TTGTGAGTCCTTAATCACGTTT Locus tag: swp_1825 Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26)
	swp_1825	SO2753	prolyl endopeptidase (EC 3.4.21.26)
Position: -144 Score: 4.2 Sequence: AAAGGTGAGCAATCTCACGTTT Locus tag: swp_3605 Name: SO1539 Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
	swp_3605	SO1539	Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Position: -175 Score: 4.4 Sequence: AATGTTGAGCGAGATCACATTT Locus tag: swp_3387 Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: swp_3386 Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: swp_3385 Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: swp_3384 Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: swp_3383 Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: swp_3382 Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: swp_3381 Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	swp_3387	atoB	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	swp_3386	mmsA	methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
	swp_3385	SO1679	branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	swp_3384	SO1680	enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	swp_3383	SO1681	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
	swp_3382	mmsB	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	swp_3381	fabG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -106 Score: 5.5 Sequence: AAATGTGATCGGAGTCACATTT Locus tag: swp_0403 Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1)
	swp_0403	cyaA	Adenylate cyclase (EC 4.6.1.1)
Position: -95 Score: 4.4 Sequence: AAATATTACCCCGATCACATAA Locus tag: swp_5075 Name: cytcB Funciton: Cytochrome c4
	swp_5075	cytcB	Cytochrome c4
Position: -93 Score: 4.2 Sequence: TATTTTGAAAAAAAGCACAAAT Locus tag: swp_3524 Name: map Funciton: methionine aminopeptidase (EC 3.4.11.18)
	swp_3524	map	methionine aminopeptidase (EC 3.4.11.18)
Position: -231 Score: 4.2 Sequence: AGGTGAGACGGTGATCACAATA Locus tag: swp_1469 Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA Locus tag: swp_1470 Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
	swp_1469	cydA	cytochrome d ubiquinol oxidase, subunit I, CydA
	swp_1470	cydB	cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -111 Score: 3.8 Sequence: TTATTTGAGCTAGCGCTAATAA Locus tag: swp_3802 Name: SO1326 Funciton: COG1242: Predicted Fe-S oxidoreductase
	swp_3802	SO1326	COG1242: Predicted Fe-S oxidoreductase
Position: -96 Score: 4.7 Sequence: TTATGTGATCGGGGTAATATTT Locus tag: swp_5074a Name: engB Funciton: GTP-binding protein EngB
	swp_5074a	engB	GTP-binding protein EngB
Position: -9 Score: 4.4 Sequence: ATATTTGATATGTACCACCTTA Locus tag: swp_4588 Name: SO4154 Funciton: transcriptional regulator, LysR family
	swp_4588	SO4154	transcriptional regulator, LysR family
Position: -84 Score: 3.5 Sequence: TTTTTTGCTGTTGTTAGCAACT Position: -61 Score: 4.1 Sequence: AATTGATAACAAGATCACATTA Locus tag: swp_2870 Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
	swp_2870	hmgA	Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -104 Score: 3.7 Sequence: TATTGCAAAGCGCCTCGCAAAT Locus tag: swp_4927 Name: null Funciton: hypothetical protein
	swp_4927		hypothetical protein
Position: -86 Score: 4.2 Sequence: AAGTGTGATCTGCAGCTAACTT Position: -25 Score: 4 Sequence: AAAGGTAATTGAAATCTCATAA Locus tag: swp_5036 Name: SO4503 Funciton: formate dehydrogenase chain D (EC 1.2.1.2) Locus tag: swp_5037 Name: SO4502 Funciton: conserved domain protein
	swp_5036	SO4503	formate dehydrogenase chain D (EC 1.2.1.2)
	swp_5037	SO4502	conserved domain protein
Position: -40 Score: 4.3 Sequence: AAATGTAATCCGTATCGCAACA Locus tag: swp_0402 Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61) Locus tag: swp_0400 Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75) Locus tag: swp_0399 Name: hemX Funciton: Homolog of E. coli HemX protein Locus tag: swp_0398 Name: hemY Funciton: HemY domain-containing protein
	swp_0402	hemC	Porphobilinogen deaminase (EC 2.5.1.61)
	swp_0400	hemD	Uroporphyrinogen-III synthase (EC 4.2.1.75)
	swp_0399	hemX	Homolog of E. coli HemX protein
	swp_0398	hemY	HemY domain-containing protein
Position: 27 Score: 4.3 Sequence: AACTGTGAAAGGTATCACACAC Locus tag: swp_1689 Name: SO2806 Funciton: hypothetical protein
	swp_1689	SO2806	hypothetical protein
Position: -214 Score: 4 Sequence: TTGCGTGTTGTATGTCACCAAA Position: -161 Score: 4.4 Sequence: AAATGTGATCGCGATCACTGCT Locus tag: swp_3395 Name: ompW Funciton: outer membrane protein W precursor
	swp_3395	ompW	outer membrane protein W precursor
Position: -161 Score: 4 Sequence: ATAAGCGATATAGCTCCCAATA Locus tag: swp_4263 Name: SO0919 Funciton: Serine transporter, putative Locus tag: swp_4262 Name: Sfri_0687 Funciton: L-serine dehydratase (EC 4.3.1.17)
	swp_4263	SO0919	Serine transporter, putative
	swp_4262	Sfri_0687	L-serine dehydratase (EC 4.3.1.17)
Position: -153 Score: 3.8 Sequence: TTTTTTGAACCTTATCAATAAA Locus tag: swp_0756 Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor
	swp_0756	sel1	Sel1 domain protein repeat-containing protein precursor
Position: -110 Score: 3.6 Sequence: TTTATTGACGATAGTCAAAAAA Locus tag: swp_0563 Name: SO0572 Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
	swp_0563	SO0572	enoyl-CoA hydratase (EC 4.2.1.17)
Position: -310 Score: 4.7 Sequence: AAGCGTGACCTGTGTCACACTT Locus tag: swp_2362 Name: null Funciton: TonB-dependent receptor
	swp_2362		TonB-dependent receptor
Position: -246 Score: 4.1 Sequence: TTATGTGCTCTAGCGCATGTTT Locus tag: swp_4657 Name: mccA Funciton: cytochrome c, putative
	swp_4657	mccA	cytochrome c, putative
Position: -132 Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT Locus tag: swp_1167 Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) Locus tag: swp_1168 Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-) Locus tag: swp_1169 Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-) Locus tag: swp_1170 Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-) Locus tag: swp_1171 Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-) Locus tag: swp_1172 Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
	swp_1167	nqrA-2	Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
	swp_1168	nqrB-2	Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
	swp_1169	nqrC-2	Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
	swp_1170	nqrD-1	Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
	swp_1171	nqrE-2	Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
	swp_1172	nqrF-2	Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -153 Score: 5 Sequence: ATATGTGATGATAATCAAAATT Locus tag: swp_2289 Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	swp_2289	fadD1	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -245 Score: 3.8 Sequence: CGATGTGATCTTGATCTGGTTT Position: -215 Score: 3.9 Sequence: ATGTGTGATATTAATCATAGGT Locus tag: swp_4512 Name: SO3895 Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
	swp_4512	SO3895	HesA/MoeB/ThiF family protein related to EC-YgdL
Position: -74 Score: 4.3 Sequence: ATATTTGATTCATCTCATATAC Locus tag: swp_4791 Name: SO4567 Funciton: transcriptional regulator, AsnC family Locus tag: swp_4792 Name: menD Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9) Locus tag: swp_4793 Name: SO4574 Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) Locus tag: swp_4795 Name: menC Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-) Locus tag: swp_4796 Name: SO4576 Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
	swp_4791	SO4567	transcriptional regulator, AsnC family
	swp_4792	menD	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
	swp_4793	SO4574	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
	swp_4795	menC	O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
	swp_4796	SO4576	O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
Position: -177 Score: 4.2 Sequence: ATTTGTGAGCTAGCTTGTATTT Locus tag: swp_0132 Name: hutC Funciton: histidine utilization repressor Locus tag: swp_0133 Name: hutU Funciton: urocanate hydratase (EC 4.2.1.49) Locus tag: swp_0134 Name: hutH Funciton: histidine ammonia-lyase (EC 4.3.1.3)
	swp_0132	hutC	histidine utilization repressor
	swp_0133	hutU	urocanate hydratase (EC 4.2.1.49)
	swp_0134	hutH	histidine ammonia-lyase (EC 4.3.1.3)
Position: -311 Score: 3.7 Sequence: ATTTGCGAGGCGCTTTGCAATA Position: -261 Score: 3.6 Sequence: AAAATTGACTTTAGTCAAAGAT Locus tag: swp_4926 Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70)
	swp_4926	prlC	Oligopeptidase A (EC 3.4.24.70)
Position: -72 Score: 3.7 Sequence: ATTATTGAGCTATAGCTCAAAT Position: -70 Score: 4.3 Sequence: TATTGAGCTATAGCTCAAATAT Locus tag: swp_3151 Name: putP Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
	swp_3151	putP	proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Position: -82 Score: 4.1 Sequence: AAGTGCGATCTCTGTCGCATTC Locus tag: swp_3037 Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5)
	swp_3037	cdd	cytidine deaminase (EC 3.5.4.5)
Position: -122 Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT Locus tag: swp_3140 Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) Locus tag: swp_3139 Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	swp_3140	fadI	3-ketoacyl-CoA thiolase (EC 2.3.1.16)
	swp_3139	fadJ	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -105 Score: 4.1 Sequence: TTCTGCGACTTACTTCAAATAA Locus tag: swp_0644 Name: modE Funciton: molybdate-binding domain of ModE
	swp_0644	modE	molybdate-binding domain of ModE
Position: -80 Score: 4.3 Sequence: TAATGTGCCCCAAGTTACATTT Locus tag: swp_4930 Name: swp_4930 Funciton: transcriptional regulator, LysR family
	swp_4930	swp_4930	transcriptional regulator, LysR family
Position: -156 Score: 4.6 Sequence: TTTTGTTACACAGATCGCATAT Locus tag: swp_0532 Name: SO0543 Funciton: hypothetical protein
	swp_0532	SO0543	hypothetical protein
Position: -76 Score: 5 Sequence: AACTGTGATCTGGTTAACAAAA Locus tag: swp_1650 Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1) Locus tag: swp_1651 Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
	swp_1650	phhA	Phenylalanine-4-hydroxylase (EC 1.14.16.1)
	swp_1651	phhB	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -221 Score: 4.3 Sequence: TAGCTTGATCTAGATCAACTTT Position: -178 Score: 4.4 Sequence: TTTTTTGACATAGCTCAAGTAT Locus tag: swp_2572 Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN Locus tag: swp_2573 Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO Locus tag: swp_2574 Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ Locus tag: swp_2575 Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
	swp_2572	ccoN	Cbb3-type cytochrome c oxidase, subunit I, CcoN
	swp_2573	ccoO	Cbb3-type cytochrome c oxidase, subunit II, CcoO
	swp_2574	ccoQ	Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
	swp_2575	ccoP	Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -21 Score: 4.1 Sequence: AAAATTGATCTAGATCAATAAA Locus tag: swp_1711 Name: null Funciton: hypothetical protein
	swp_1711		hypothetical protein
Position: -115 Score: 4.9 Sequence: TAATGTGATCTTGTTATCAATT Locus tag: swp_2869 Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family
	swp_2869	hmgR	Tyrosine degradation transcriptional regulator, LysR family
Position: -127 Score: 4.4 Sequence: TTATGTGATTAGTCGCACACTG Locus tag: swp_0035 Name: fadB Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Locus tag: swp_0034 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
	swp_0035	fadB	enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	swp_0034	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -311 Score: 4 Sequence: AGTTGTTAAGTCGCTCTCAATT Locus tag: swp_1953 Name: Spea_1673 Funciton: hypothetical protein
	swp_1953	Spea_1673	hypothetical protein
Position: -106 Score: 3.8 Sequence: TAGGGTGAGCAAAGTCACGATT Position: -94 Score: 3.9 Sequence: TTTGTTGATCTATCTCACTGTT Locus tag: swp_0428 Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit Locus tag: swp_0429 Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit Locus tag: swp_0430 Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: swp_0431 Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	swp_0428	frdC1	Fumarate reductase cytochrome b subunit
	swp_0429	fdrC2	Fumarate reductase cytochrome b subunit
	swp_0430	frdA	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	swp_0431	frdB	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -140 Score: 5 Sequence: TAGTGTGATTTAGCTCACGCTA Locus tag: swp_1653 Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein Locus tag: swp_1654 Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
	swp_1653	fahA	Fumarylacetoacetate hydrolase family protein
	swp_1654	maiA	Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -76 Score: 4.6 Sequence: AAACGTGATTTAGATCACGACT Locus tag: swp_3757 Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA
	swp_3757	yfiA-2	Ribosome hibernation protein YfiA
Position: -104 Score: 4.1 Sequence: AACCTTGATCTTAATCATAATT Locus tag: swp_4367 Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein Locus tag: swp_4368 Name: Sfri_4034 Funciton: FMN-binding domain-containing protein Locus tag: swp_4369 Name: Sfri_4033 Funciton: PepSY-associated TM helix domain-containing protein
	swp_4367	Sfri_4035	Conserved hypothetical signal peptide protein
	swp_4368	Sfri_4034	FMN-binding domain-containing protein
	swp_4369	Sfri_4033	PepSY-associated TM helix domain-containing protein
Position: -318 Score: 4.3 Sequence: TGAGGTGATGCATATCATAAAA Locus tag: swp_4060 Name: swp_4060 Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
	swp_4060	swp_4060	phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Position: -322 Score: 3.9 Sequence: TAATGCAATTGGTATTACAATA Locus tag: swp_4339 Name: Sputcn32_0834 Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) Locus tag: swp_4340 Name: asnC Funciton: regulatory protein AsnC
	swp_4339	Sputcn32_0834	ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
	swp_4340	asnC	regulatory protein AsnC
Position: -184 Score: 4.3 Sequence: TAGTTTGATGGAGCGCACGTTT Locus tag: swp_2923 Name: null Funciton: cytochrome c3
	swp_2923		cytochrome c3
Position: -191 Score: 4.4 Sequence: AACTGTGAAACAACTCACAAAG Locus tag: swp_1238 Name: psrA Funciton: polysulfide reductase, subunit A Locus tag: swp_1239 Name: psrB Funciton: polysulfide reductase, subunit B Locus tag: swp_1240 Name: psrC Funciton: polysulfide reductase, subunit C
	swp_1238	psrA	polysulfide reductase, subunit A
	swp_1239	psrB	polysulfide reductase, subunit B
	swp_1240	psrC	polysulfide reductase, subunit C
Position: -308 Score: 4.2 Sequence: TTATGTGACAAATCTCTCAACT Position: -185 Score: 4.6 Sequence: CAGTGTGACGTAGATCACGCTT Locus tag: swp_3272 Name: mtrD Funciton: periplasmic decaheme cytochrome c, MtrD Locus tag: swp_3273 Name: mtrE Funciton: outer membrane protein, MtrE Locus tag: swp_3274 Name: mtrF Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF Locus tag: swp_3275 Name: omcA Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
	swp_3272	mtrD	periplasmic decaheme cytochrome c, MtrD
	swp_3273	mtrE	outer membrane protein, MtrE
	swp_3274	mtrF	surface localized decaheme cytochrome c lipoprotein, MtrF
	swp_3275	omcA	surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -180 Score: 4.3 Sequence: TTTAGTGATAGAGCACACAGAA Locus tag: swp_4302 Name: swp_4302 Funciton: hypothetical protein
	swp_4302	swp_4302	hypothetical protein
Position: -276 Score: 3.7 Sequence: TATTTCAATAAGGATCAAATAT Locus tag: swp_3472 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: swp_3471 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	swp_3472	etfB	electron transfer flavoprotein, beta subunit
	swp_3471	etfA	electron transfer flavoprotein, alpha subunit
Position: -210 Score: 4.5 Sequence: ATGTGTGATCTGTATCACTCAG Locus tag: swp_3737 Name: SO3541 Funciton: sodium:alanine symporter family protein
	swp_3737	SO3541	sodium:alanine symporter family protein
Position: -147 Score: 4.1 Sequence: CAGCGTGATCTGCCGCACGTTT Locus tag: swp_4077 Name: purT Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
	swp_4077	purT	phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Position: -268 Score: 4.5 Sequence: ATATTAGATCTAAATCACACTT Position: -238 Score: 3.9 Sequence: TAACGTTAGTTACCACACAAAA Locus tag: swp_3549 Name: SO1603 Funciton: putative transcriptional regulator, inferred for PFA pathway Locus tag: swp_3550 Name: SO1602 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA Locus tag: swp_3551 Name: Sputcn32_1325 Funciton: omega-3 polyunsaturated fatty acid synthase PfaB Locus tag: swp_3553 Name: SO1599 Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
	swp_3549	SO1603	putative transcriptional regulator, inferred for PFA pathway
	swp_3550	SO1602	omega-3 polyunsaturated fatty acid synthase subunit, PfaA
	swp_3551	Sputcn32_1325	omega-3 polyunsaturated fatty acid synthase PfaB
	swp_3553	SO1599	omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Position: -150 Score: 4.1 Sequence: AAACTTGATCTAGCCCACAATC Locus tag: swp_4514 Name: omp35 Funciton: outer membrane porin
	swp_4514	omp35	outer membrane porin
Position: -87 Score: 4.2 Sequence: GAATGTGATCTAGCTCACAGGT Locus tag: swp_3059 Name: SO2589 Funciton: isopenicillin N synthase
	swp_3059	SO2589	isopenicillin N synthase
Position: -309 Score: 4.2 Sequence: TTTATTGATAAGGTTCAAAAAA Locus tag: swp_0755 Name: crp Funciton: Cyclic AMP receptor protein Crp
	swp_0755	crp	Cyclic AMP receptor protein Crp
Position: -212 Score: 5 Sequence: ATTTGTGATTTAAATCGCGTTA Position: -112 Score: 3.8 Sequence: ATATTCGAACTACATCAAATTG Locus tag: swp_2043 Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA Locus tag: swp_2042 Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit Locus tag: swp_2041 Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE Locus tag: swp_2040 Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE Locus tag: swp_2039 Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
	swp_2043	ccmA	ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
	swp_2042	ccmB	ABC transporter involved in cytochrome c biogenesis, CcmB subunit
	swp_2041	ccmC	cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
	swp_2040	ccmD	cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
	swp_2039	ccmE	cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -166 Score: 4.2 Sequence: AAGTATGACTTACTTAACAAAA Locus tag: swp_5018 Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
	swp_5018	SO4520	Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -97 Score: 3.3 Sequence: TTATATAATGATTTTTATATTT Locus tag: swp_4118 Name: null Funciton: hypothetical protein Locus tag: swp_4117 Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor Locus tag: swp_4116 Name: nrfC Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Locus tag: swp_4115 Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
	swp_4118		hypothetical protein
	swp_4117	nrfB	Cytochrome c-type protein NrfB precursor
	swp_4116	nrfC	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
	swp_4115	nrfD-2	nitrite reductase, quinol dehydrogenase component, NrfD
Position: -94 Score: 3.9 Sequence: TTTGTTGATCTATCTCACTGTT Locus tag: swp_0429 Name: fdrC Funciton: fumarate reductase cytochrome b subunit Locus tag: swp_0430 Name: frdA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Locus tag: swp_0431 Name: frdB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
	swp_0429	fdrC	fumarate reductase cytochrome b subunit
	swp_0430	frdA	succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
	swp_0431	frdB	succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -153 Score: 3.6 Sequence: ACTTGTGAAGTGTATCATTGTT Locus tag: swp_2753 Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD
	swp_2753	ydhD	Probable monothiol glutaredoxin ydhD
Position: -106 Score: 4.4 Sequence: TAAAGTGAGGTAGAGCACATTC Locus tag: swp_2053 Name: ppc Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31) Locus tag: swp_2052 Name: yceB Funciton: uncharacterized lipoprotein YceB precursor
	swp_2053	ppc	phosphoenolpyruvate carboxylase (EC 4.1.1.31)
	swp_2052	yceB	uncharacterized lipoprotein YceB precursor
Position: -113 Score: 4.5 Sequence: GATTGTGATCAGTATCAAACAA Locus tag: swp_4749 Name: lpdA Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
	swp_4749	lpdA	Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -177 Score: 4.1 Sequence: TGATGTGATAAAAAGCACTCAT Locus tag: swp_3409 Name: null Funciton: hypothetical protein swp_3409 Locus tag: swp_3408 Name: yfiA-1 Funciton: ribosomal subunit interface protein
	swp_3409		hypothetical protein swp_3409
	swp_3408	yfiA-1	ribosomal subunit interface protein
Position: -306 Score: 4 Sequence: TAAGGTTAACCTGATCACACTT Position: -88 Score: 4.8 Sequence: AAACATGATCTAACTCACAAAT Locus tag: swp_4703 Name: SO4134 Funciton: Protein of unknown function DUF465
	swp_4703	SO4134	Protein of unknown function DUF465
Position: -108 Score: 4.7 Sequence: AAAAGTGATATTGCTCTCAAAT Locus tag: swp_1821 Name: Swoo_2741 Funciton: Alkyl hydroperoxide reductase subunit C-like protein
	swp_1821	Swoo_2741	Alkyl hydroperoxide reductase subunit C-like protein
Position: -133 Score: 4 Sequence: GAAAGTGATCGAGCTCAACTAT Locus tag: swp_4577 Name: SO4142 Funciton: cytochrome c family protein Locus tag: swp_4578 Name: SO4143 Funciton: hypothetical protein Locus tag: swp_4579 Name: SO4144 Funciton: octaheme tetrathionate reductase
	swp_4577	SO4142	cytochrome c family protein
	swp_4578	SO4143	hypothetical protein
	swp_4579	SO4144	octaheme tetrathionate reductase
Position: -222 Score: 4.3 Sequence: TGAGGTGATTAGTGTCACAAAA Locus tag: swp_5009 Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA Locus tag: swp_5008 Name: moaB Funciton: molybdenum cofactor biosynthesis protein MoaB Locus tag: swp_5007 Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC Locus tag: swp_5006 Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD Locus tag: swp_5005 Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE Locus tag: swp_5004 Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) Locus tag: swp_5002 Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1) Locus tag: swp_5001 Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
	swp_5009	moaA	molybdenum cofactor biosynthesis protein MoaA
	swp_5008	moaB	molybdenum cofactor biosynthesis protein MoaB
	swp_5007	moaC	molybdenum cofactor biosynthesis protein MoaC
	swp_5006	moaD	molybdenum cofactor biosynthesis protein MoaD
	swp_5005	moaE	molybdenum cofactor biosynthesis protein MoaE
	swp_5004	modA	molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
	swp_5002	modB	molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
	swp_5001	modC	molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -276 Score: 3.8 Sequence: ATTTGAGATCTAAAAAAAAATA Locus tag: swp_4806 Name: cymA Funciton: membrane anchored tetraheme cytochrome c, CymA
	swp_4806	cymA	membrane anchored tetraheme cytochrome c, CymA
Position: -46 Score: 3.9 Sequence: AAAACAGATCTAAATCACAAAA Locus tag: swp_4100 Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37)
	swp_4100	mdh	malate dehydrogenase (EC 1.1.1.37)
Position: -69 Score: 5.2 Sequence: AAATGTGATCTGTCTTACATTT Locus tag: swp_3928 Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase Locus tag: swp_3930 Name: lipA Funciton: Lipoate synthase
	swp_3928	lipB	Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
	swp_3930	lipA	Lipoate synthase
Position: -97 Score: 3.5 Sequence: AATTGTGACGTAGACCCGCAAA Locus tag: swp_2312 Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	swp_2312	fadE2	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -286 Score: 4.5 Sequence: AATCGTGACTTTGCTCACCCTA Locus tag: swp_0427 Name: prmA Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-) Locus tag: swp_0426 Name: nifR3 Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-) Locus tag: swp_0425 Name: fis Funciton: DNA-binding protein Fis
	swp_0427	prmA	ribosomal protein L11 methyltransferase (EC 2.1.1.-)
	swp_0426	nifR3	tRNA dihydrouridine synthase B (EC 1.-.-.-)
	swp_0425	fis	DNA-binding protein Fis
Position: -105 Score: 4.5 Sequence: AAAGGTGAACTAGATCACAAAG Locus tag: swp_1085 Name: Shew_1222 Funciton: hypothetical protein
	swp_1085	Shew_1222	hypothetical protein
Position: -177 Score: 3.9 Sequence: ACCTATGATTAATATCACACAT Locus tag: swp_4513 Name: Shewana3_0734 Funciton: outer membrane porin, putative
	swp_4513	Shewana3_0734	outer membrane porin, putative
Position: -237 Score: 4.5 Sequence: CTGAGTGATACAGATCACACAT Position: -96 Score: 3.8 Sequence: AAATAAGATACAGGACACATTT Locus tag: swp_3738 Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
	swp_3738	phk	Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -366 Score: 4.9 Sequence: AGTCGTGATCTAAATCACGTTT Locus tag: swp_3756 Name: SO3421 Funciton: b-type cytochrome, putative
	swp_3756	SO3421	b-type cytochrome, putative
Position: -113 Score: 4 Sequence: GAAGTTGATCTTGCTCACAAAA Locus tag: swp_1052 Name: SO3683 Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) Locus tag: swp_1051 Name: SO3684 Funciton: transcriptional regulator, TetR family
	swp_1052	SO3683	aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
	swp_1051	SO3684	transcriptional regulator, TetR family
Position: -176 Score: 4.4 Sequence: TTTTGTGACACTAATCACCTCA Locus tag: swp_5010 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	swp_5010	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -220 Score: 3.8 Sequence: GAAAGTGACTTAAATCGCGTTT Locus tag: swp_1671 Name: null Funciton: hypothetical protein
	swp_1671		hypothetical protein
Position: -42 Score: 4.4 Sequence: TAAGGTGATCTCTTTCATAGTT Locus tag: swp_3762 Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-) Locus tag: swp_3761 Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
	swp_3762	hcp	Hydroxylamine reductase (EC 1.7.-.-)
	swp_3761	hcr	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Crp in Shewanella piezotolerans WP3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --