Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_0755
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 262
- Operons 136
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -162
Score: 4.4
Sequence: AAATGTGATGTTTAACTCAAAG
Locus tag: swp_2633
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)

Position: -181
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: swp_4724
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: swp_4725
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)

Position: -293
Score: 4.6
Sequence: AAACGTGAGATTGCTCACCTTT
Locus tag: swp_3606
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)

Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: swp_5075
Name: cytcB
Funciton: diheme cytochrome c4
cytcB
diheme cytochrome c4

Position: -283
Score: 4.4
Sequence: AAGTATGAATCAGATCACACTT
Position: -177
Score: 3.7
Sequence: AACACTGAGATTAATCACATAA
Position: -101
Score: 3.7
Sequence: TTTCGTAAAGCTAAACACAATA
Locus tag: swp_4741
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
yniC
2-deoxyglucose-6-phosphate hydrolase YniC

Position: -67
Score: 4.4
Sequence: AAATTTGATCTGCCGCTCAATT
Locus tag: swp_3422
Name: fadE
Funciton: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE
acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -184
Score: 4.4
Sequence: AACTGTGATCTCTATCACCGAC
Locus tag: swp_3568
Name: SO1482
Funciton: tonB-dependent receptor, putative
SO1482
tonB-dependent receptor, putative

Position: -217
Score: 4.4
Sequence: ATTCGTGCTGAAAATCAAATTT
Locus tag: swp_4772
Name: pilZ
Funciton: type IV pilus assembly PilZ
pilZ
type IV pilus assembly PilZ

Position: -143
Score: 4.3
Sequence: ATTTGTGATCCATGTGGCAATT
Locus tag: swp_1858
Name: SO2637
Funciton: hypothetical protein
SO2637
hypothetical protein

Position: -127
Score: 3.9
Sequence: AAAGTTGTCATAGATCACATTT
Locus tag: swp_0315
Name: SO0355
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: swp_0314
Name: SO0354
Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
SO0355
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO0354
inner membrane protein YrbG, predicted calcium/sodium:proton antiporter

Position: -120
Score: 4.3
Sequence: ATGAGTGATCTTGTTCATAGTA
Locus tag: swp_2077
Name: SO0296
Funciton: integral membrane domain protein
SO0296
integral membrane domain protein

Position: -139
Score: 4.8
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: swp_1230
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: swp_1231
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: swp_1232
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA
thymidine phosphorylase (EC 2.4.2.4)
deoB
phosphopentomutase (EC 5.4.2.7)
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)

Position: -64
Score: 4.1
Sequence: AAACGTGATCAACAGCATCTTT
Locus tag: swp_4510
Name: Sputcn32_0777
Funciton: hypothetical protein
Sputcn32_0777
hypothetical protein

Position: -119
Score: 4.5
Sequence: AAATGTTATCTCTGTCAAACAA
Locus tag: swp_2516
Name: SO1419
Funciton: lipoprotein, putative
Locus tag: swp_2517
Name: SO1420
Funciton: outer membrane porin, putative
SO1419
lipoprotein, putative
SO1420
outer membrane porin, putative

Position: -42
Score: 3.8
Sequence: TACATTGATATCTATCACTATT
Locus tag: swp_3020
Name: yceI
Funciton: hypothetical protein
Locus tag: swp_3019
Name: SO2891
Funciton: type IIA topoisomerase, B subunit
yceI
hypothetical protein
SO2891
type IIA topoisomerase, B subunit

Position: -131
Score: 4.2
Sequence: AACTATGATCTGGTTCTAATTT
Locus tag: swp_0793
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: swp_0794
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: swp_0795
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: swp_0796
Name: sspA
Funciton: stringent starvation protein A
Locus tag: swp_0797
Name: sspB
Funciton: stringent starvation protein B
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
sspA
stringent starvation protein A
sspB
stringent starvation protein B

Position: -271
Score: 4.4
Sequence: TTCCTTGATCGAGATCACACAA
Locus tag: swp_3538
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -21
Score: 4.2
Sequence: AAGTGTGATCCGCAACTAAATT
Locus tag: swp_1867
Name: null
Funciton: hypothetical protein swp_1867
Locus tag: swp_1868
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
hypothetical protein swp_1867
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Position: -156
Score: 4
Sequence: ATTCGTGACCTAGATTAGACTT
Locus tag: swp_0168
Name: SO0141
Funciton: sensory box/GGDEF family protein
SO0141
sensory box/GGDEF family protein

Position: -239
Score: 3.8
Sequence: TTTAATAATATAGATCATAAAA
Position: -143
Score: 4.1
Sequence: TATTTTGATATTGATGAAATTA
Position: -2
Score: 4
Sequence: ATATGGAATTTCTATCACCTTT
Locus tag: swp_2809
Name: ycbW
Funciton: probable membrane protein YcbW
ycbW
probable membrane protein YcbW

Position: -100
Score: 4.1
Sequence: CTCTATGATATAGCTCACAGAT
Locus tag: swp_1789
Name: Sfri_2271
Funciton: permease of the major facilitator superfamily
Locus tag: swp_1790
Name: Sfri_2272
Funciton: hypothetical protein
Locus tag: swp_1791
Name: Sfri_2273
Funciton: nitrogen regulatory protein P-II
Locus tag: swp_1792
Name: Sfri_2274
Funciton: hypothetical protein
Sfri_2271
permease of the major facilitator superfamily
Sfri_2272
hypothetical protein
Sfri_2273
nitrogen regulatory protein P-II
Sfri_2274
hypothetical protein

Position: -148
Score: 4
Sequence: TTATGAGATTTCAATTACCTTT
Position: -87
Score: 3.8
Sequence: AAGTTAGCTGCAGATCACACTT
Locus tag: swp_5035
Name: null
Funciton: hypothetical protein swp_5035
Locus tag: swp_5034
Name: null
Funciton: hypothetical protein
Locus tag: swp_5033
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: swp_5032
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: swp_5031
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: swp_5030
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: swp_5029
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: swp_5028
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: swp_5027
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
hypothetical protein swp_5035
hypothetical protein
SO4505
hypothetical protein probably related to Formate dehydrogenase function
SO4506
iron-sulfur cluster-binding protein
SO4507
putative formate dehydrogenase-specific chaperone
SO4508
formate dehydrogenase subunit or accessory protein
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)

Position: -181
Score: 3.8
Sequence: TATAGCGATAAAGTTAAAATTT
Locus tag: swp_0481
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)

Position: -258
Score: 4.3
Sequence: TTTATTGATCTAGATCTAATAA
Locus tag: swp_4010
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: swp_4009
Name: SO0941
Funciton: hypothetical protein
cadC
transcriptional regulator-related protein
SO0941
hypothetical protein

Position: -113
Score: 4.9
Sequence: TTTTTTGATCTAGTCCACATAT
Locus tag: swp_0182
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)

Position: -157
Score: 4.2
Sequence: TATTGTGACCGGTTACGCAGTA
Locus tag: swp_4120
Name: Sama_2899
Funciton: transcriptional regulator, LysR family
Sama_2899
transcriptional regulator, LysR family

Position: -4
Score: 4.6
Sequence: TACTGTGATCGATATCACGTCT
Locus tag: swp_4346
Name: SO3987
Funciton: hypothetical protein
SO3987
hypothetical protein

Position: -248
Score: 4.2
Sequence: TAACGTGCTAAAGCTCACGAAA
Locus tag: swp_4239
Name: cadC
Funciton: transcriptional regulator-related protein
cadC
transcriptional regulator-related protein

Position: -222
Score: 3.7
Sequence: ATGCGCGATTTGCATTACCTTT
Locus tag: swp_3965
Name: fadD-2
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD-2
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -100
Score: 5.7
Sequence: TTTTGTGATCTGCCTCACAAAT
Locus tag: swp_0564
Name: Sama_3134
Funciton: membrane protein
Sama_3134
membrane protein

Position: -119
Score: 4.3
Sequence: TTTTATGATATGCATCACCTCA
Locus tag: swp_4059
Name: cobA
Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: swp_4058
Name: cysD
Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: swp_4057
Name: cysN
Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: swp_4056
Name: Shew_1424
Funciton: sulfate permease, Trk-type
Locus tag: swp_4055
Name: cysC
Funciton: adenylylsulfate kinase (EC 2.7.1.25)
cobA
uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
cysD
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
cysN
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Shew_1424
sulfate permease, Trk-type
cysC
adenylylsulfate kinase (EC 2.7.1.25)

Position: -204
Score: 3.9
Sequence: TTTTGTTATGACGGTTGCATTT
Locus tag: swp_1592
Name: cysC
Funciton: adenylylsulfate kinase (EC 2.7.1.25)
cysC
adenylylsulfate kinase (EC 2.7.1.25)

Position: -131
Score: 3.8
Sequence: AAATGTGATCAGAACTGCGTTA
Locus tag: swp_4841
Name: yhgI
Funciton: NfuA Fe-S protein maturation
yhgI
NfuA Fe-S protein maturation

Position: -20
Score: 4.6
Sequence: AACTGTGACCTAGTTCACGGAT
Locus tag: swp_2955
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: swp_2953
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: swp_2952
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_2950
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: swp_2949
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: swp_2948
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: swp_2947
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: swp_2946
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)

Position: -137
Score: 3.9
Sequence: AAAGGTGTCGCTCGTCACATTT
Locus tag: swp_0809
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

Position: -150
Score: 4
Sequence: AAATGTGAGCAACAACACGTTC
Locus tag: swp_3958
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
nrfA
cytochrome c552 precursor (EC 1.7.2.2)

Position: -269
Score: 4.7
Sequence: AAGTGTGACGAACATAACATTA
Locus tag: swp_4939
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit FixA
Locus tag: swp_4940
Name: fixB
Funciton: electron transfer flavoprotein, alpha subunit FixB
Locus tag: swp_4941
Name: fixC
Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Locus tag: swp_4942
Name: fixX
Funciton: ferredoxin-like protein FixX
fixA
electron transfer flavoprotein, beta subunit FixA
fixB
electron transfer flavoprotein, alpha subunit FixB
fixC
probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
fixX
ferredoxin-like protein FixX

Position: -79
Score: 4.3
Sequence: TTTTGTGAGCAAGATCAACTTC
Locus tag: swp_1054
Name: null
Funciton: hypothetical protein
Locus tag: swp_1055
Name: SO3681
Funciton: universal stress protein family
hypothetical protein
SO3681
universal stress protein family

Position: -123
Score: 3.8
Sequence: TTATGCGCCCTTCATCACCCTA
Locus tag: swp_3241
Name: nadC
Funciton: di-and tricarboxylate transporter
nadC
di-and tricarboxylate transporter

Position: -141
Score: 4.7
Sequence: TTCTGTGATTCAGGTCGCAAAT
Locus tag: swp_3809
Name: Sbal_1323
Funciton: HTH-type transcriptional regulator BetI
Locus tag: swp_3810
Name: Sbal_1324
Funciton: betaine aldehyde dehydrogenase (EC 1.2.1.8)
Locus tag: swp_3811
Name: Sbal_1325
Funciton: choline dehydrogenase (EC 1.1.99.1)
Locus tag: swp_3812
Name: null
Funciton: hypothetical protein swp_3812
Locus tag: swp_3813
Name: Sden_0716
Funciton: predicted choline transporter BetT-II
Locus tag: swp_3814
Name: Sbal_1327
Funciton: conserved hypothetical protein 2001
Locus tag: swp_3815
Name: marR
Funciton: transcriptional regulator, MarR family
Sbal_1323
HTH-type transcriptional regulator BetI
Sbal_1324
betaine aldehyde dehydrogenase (EC 1.2.1.8)
Sbal_1325
choline dehydrogenase (EC 1.1.99.1)
hypothetical protein swp_3812
Sden_0716
predicted choline transporter BetT-II
Sbal_1327
conserved hypothetical protein 2001
marR
transcriptional regulator, MarR family

Position: -105
Score: 4.4
Sequence: TTGTTTGACAGAGATAACATTT
Locus tag: swp_2515
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
apbE
thiamin biosynthesis lipoprotein ApbE

Position: -97
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: swp_3141
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: swp_3143
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: swp_3144
Name: null
Funciton: hypothetical protein
Locus tag: swp_3145
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: swp_3146
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: swp_3148
Name: SO3095
Funciton: hypothetical protein
SO3090
MoxR-like ATPase in aerotolerance operon
SO3091
Conserved hypothetical protein
hypothetical protein
SO3093
von Willebrand factor type A domain protein
SO3094
TPR domain protein in aerotolerance operon
SO3095
hypothetical protein

Position: -98
Score: 4.6
Sequence: TCATTTGACTTAGATCACAAAT
Locus tag: swp_3798
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaC
Adenylate cyclase (EC 4.6.1.1)

Position: -96
Score: 4
Sequence: TTTTGTGCGCACCTTCAAACTT
Locus tag: swp_2171
Name: ygbA
Funciton: nitrosative stress induced protein
ygbA
nitrosative stress induced protein

Position: -185
Score: 3.7
Sequence: AAACGCGATTTAAGTCACTTTC
Locus tag: swp_1670
Name: SO3120
Funciton: oxidoreductase, Gfo/Idh/MocA family
SO3120
oxidoreductase, Gfo/Idh/MocA family

Position: -117
Score: 4.3
Sequence: TGTTGTGCGCGAGTTCACATTG
Locus tag: swp_5150
Name: SO4743
Funciton: ferrichrome-iron receptor
Locus tag: swp_5149
Name: deoR
Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: swp_5148
Name: glmS
Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
SO4743
ferrichrome-iron receptor
deoR
transcriptional regulator of glmS gene, DeoR family
glmS
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)

Position: -140
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Locus tag: swp_0747
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: swp_0748
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: swp_0749
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: swp_0750
Name: SO0620
Funciton: FIG008480: hypothetical protein
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
FIG008480: hypothetical protein

Position: -77
Score: 4.6
Sequence: TATAGTGATCTCAATCACAGCT
Locus tag: swp_0358
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)

Position: -231
Score: 4.4
Sequence: CAATTTGATGTAGTTCGAATAT
Position: -131
Score: 4.8
Sequence: TAACGCGATTTAAATCACAAAT
Locus tag: swp_2044
Name: scyA
Funciton: cytochrome c-type protein
scyA
cytochrome c-type protein

Position: -140
Score: 3.8
Sequence: ATTTATACTCTACATCATATTT
Locus tag: swp_4101
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon

Position: -245
Score: 3.9
Sequence: TTATGTGATTAATCTCAGTGTT
Position: -139
Score: 4.9
Sequence: AAGTGTGATCTGATTCATACTT
Locus tag: swp_4740
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)

Position: -124
Score: 3.9
Sequence: TTTTGTGAGGTAGGTAAAGGTA
Position: -77
Score: 3.7
Sequence: TGATCTGATTCAATTAAAAATA
Locus tag: swp_4046
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: swp_4045
Name: SO3719
Funciton: hypothetical protein
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
SO3719
hypothetical protein

Position: -310
Score: 4.7
Sequence: ATTTGTGAGTTAGATCATGTTT
Position: -92
Score: 4.6
Sequence: AAGTGTGATCAGGTTAACCTTA
Locus tag: swp_4702
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp
Uridine phosphorylase (EC 2.4.2.3)

Position: -77
Score: 4.1
Sequence: ATTTGAGAGCAATATCACTTTT
Locus tag: swp_1820
Name: SO2757
Funciton: Histidine permease YuiF
SO2757
Histidine permease YuiF

Position: -280
Score: 4.6
Sequence: AAGCGTGATCTACGTCACACTG
Position: -157
Score: 4.2
Sequence: AGTTGAGAGATTTGTCACATAA
Locus tag: swp_3271
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: swp_3270
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -248
Score: 3.6
Sequence: TTGTGAGTCCTTAATCACGTTT
Locus tag: swp_1825
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
SO2753
prolyl endopeptidase (EC 3.4.21.26)

Position: -144
Score: 4.2
Sequence: AAAGGTGAGCAATCTCACGTTT
Locus tag: swp_3605
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)

Position: -175
Score: 4.4
Sequence: AATGTTGAGCGAGATCACATTT
Locus tag: swp_3387
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: swp_3386
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: swp_3385
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: swp_3384
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: swp_3383
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: swp_3382
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: swp_3381
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
mmsA
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
SO1679
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
SO1680
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
SO1681
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
mmsB
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

Position: -106
Score: 5.5
Sequence: AAATGTGATCGGAGTCACATTT
Locus tag: swp_0403
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaA
Adenylate cyclase (EC 4.6.1.1)

Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: swp_5075
Name: cytcB
Funciton: Cytochrome c4
cytcB
Cytochrome c4

Position: -93
Score: 4.2
Sequence: TATTTTGAAAAAAAGCACAAAT
Locus tag: swp_3524
Name: map
Funciton: methionine aminopeptidase (EC 3.4.11.18)
map
methionine aminopeptidase (EC 3.4.11.18)

Position: -231
Score: 4.2
Sequence: AGGTGAGACGGTGATCACAATA
Locus tag: swp_1469
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: swp_1470
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB

Position: -111
Score: 3.8
Sequence: TTATTTGAGCTAGCGCTAATAA
Locus tag: swp_3802
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
SO1326
COG1242: Predicted Fe-S oxidoreductase

Position: -96
Score: 4.7
Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: swp_5074a
Name: engB
Funciton: GTP-binding protein EngB
engB
GTP-binding protein EngB

Position: -9
Score: 4.4
Sequence: ATATTTGATATGTACCACCTTA
Locus tag: swp_4588
Name: SO4154
Funciton: transcriptional regulator, LysR family
SO4154
transcriptional regulator, LysR family

Position: -84
Score: 3.5
Sequence: TTTTTTGCTGTTGTTAGCAACT
Position: -61
Score: 4.1
Sequence: AATTGATAACAAGATCACATTA
Locus tag: swp_2870
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)

Position: -104
Score: 3.7
Sequence: TATTGCAAAGCGCCTCGCAAAT
Locus tag: swp_4927
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -86
Score: 4.2
Sequence: AAGTGTGATCTGCAGCTAACTT
Position: -25
Score: 4
Sequence: AAAGGTAATTGAAATCTCATAA
Locus tag: swp_5036
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: swp_5037
Name: SO4502
Funciton: conserved domain protein
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
conserved domain protein

Position: -40
Score: 4.3
Sequence: AAATGTAATCCGTATCGCAACA
Locus tag: swp_0402
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: swp_0400
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: swp_0399
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: swp_0398
Name: hemY
Funciton: HemY domain-containing protein
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
hemX
Homolog of E. coli HemX protein
hemY
HemY domain-containing protein

Position: 27
Score: 4.3
Sequence: AACTGTGAAAGGTATCACACAC
Locus tag: swp_1689
Name: SO2806
Funciton: hypothetical protein
SO2806
hypothetical protein

Position: -214
Score: 4
Sequence: TTGCGTGTTGTATGTCACCAAA
Position: -161
Score: 4.4
Sequence: AAATGTGATCGCGATCACTGCT
Locus tag: swp_3395
Name: ompW
Funciton: outer membrane protein W precursor
ompW
outer membrane protein W precursor

Position: -161
Score: 4
Sequence: ATAAGCGATATAGCTCCCAATA
Locus tag: swp_4263
Name: SO0919
Funciton: Serine transporter, putative
Locus tag: swp_4262
Name: Sfri_0687
Funciton: L-serine dehydratase (EC 4.3.1.17)
SO0919
Serine transporter, putative
Sfri_0687
L-serine dehydratase (EC 4.3.1.17)

Position: -153
Score: 3.8
Sequence: TTTTTTGAACCTTATCAATAAA
Locus tag: swp_0756
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
sel1
Sel1 domain protein repeat-containing protein precursor

Position: -110
Score: 3.6
Sequence: TTTATTGACGATAGTCAAAAAA
Locus tag: swp_0563
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)

Position: -310
Score: 4.7
Sequence: AAGCGTGACCTGTGTCACACTT
Locus tag: swp_2362
Name: null
Funciton: TonB-dependent receptor
TonB-dependent receptor

Position: -246
Score: 4.1
Sequence: TTATGTGCTCTAGCGCATGTTT
Locus tag: swp_4657
Name: mccA
Funciton: cytochrome c, putative
mccA
cytochrome c, putative

Position: -132
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: swp_1167
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: swp_1168
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: swp_1169
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: swp_1170
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: swp_1171
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: swp_1172
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)

Position: -153
Score: 5
Sequence: ATATGTGATGATAATCAAAATT
Locus tag: swp_2289
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -245
Score: 3.8
Sequence: CGATGTGATCTTGATCTGGTTT
Position: -215
Score: 3.9
Sequence: ATGTGTGATATTAATCATAGGT
Locus tag: swp_4512
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL

Position: -74
Score: 4.3
Sequence: ATATTTGATTCATCTCATATAC
Locus tag: swp_4791
Name: SO4567
Funciton: transcriptional regulator, AsnC family
Locus tag: swp_4792
Name: menD
Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: swp_4793
Name: SO4574
Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: swp_4795
Name: menC
Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: swp_4796
Name: SO4576
Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
SO4567
transcriptional regulator, AsnC family
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
SO4574
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
menC
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
SO4576
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)

Position: -177
Score: 4.2
Sequence: ATTTGTGAGCTAGCTTGTATTT
Locus tag: swp_0132
Name: hutC
Funciton: histidine utilization repressor
Locus tag: swp_0133
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: swp_0134
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
hutC
histidine utilization repressor
hutU
urocanate hydratase (EC 4.2.1.49)
hutH
histidine ammonia-lyase (EC 4.3.1.3)

Position: -311
Score: 3.7
Sequence: ATTTGCGAGGCGCTTTGCAATA
Position: -261
Score: 3.6
Sequence: AAAATTGACTTTAGTCAAAGAT
Locus tag: swp_4926
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
prlC
Oligopeptidase A (EC 3.4.24.70)

Position: -72
Score: 3.7
Sequence: ATTATTGAGCTATAGCTCAAAT
Position: -70
Score: 4.3
Sequence: TATTGAGCTATAGCTCAAATAT
Locus tag: swp_3151
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter

Position: -82
Score: 4.1
Sequence: AAGTGCGATCTCTGTCGCATTC
Locus tag: swp_3037
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
cdd
cytidine deaminase (EC 3.5.4.5)

Position: -122
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: swp_3140
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: swp_3139
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

Position: -105
Score: 4.1
Sequence: TTCTGCGACTTACTTCAAATAA
Locus tag: swp_0644
Name: modE
Funciton: molybdate-binding domain of ModE
modE
molybdate-binding domain of ModE

Position: -80
Score: 4.3
Sequence: TAATGTGCCCCAAGTTACATTT
Locus tag: swp_4930
Name: swp_4930
Funciton: transcriptional regulator, LysR family
swp_4930
transcriptional regulator, LysR family

Position: -156
Score: 4.6
Sequence: TTTTGTTACACAGATCGCATAT
Locus tag: swp_0532
Name: SO0543
Funciton: hypothetical protein
SO0543
hypothetical protein

Position: -76
Score: 5
Sequence: AACTGTGATCTGGTTAACAAAA
Locus tag: swp_1650
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: swp_1651
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)

Position: -221
Score: 4.3
Sequence: TAGCTTGATCTAGATCAACTTT
Position: -178
Score: 4.4
Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: swp_2572
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: swp_2573
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: swp_2574
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: swp_2575
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP

Position: -21
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: swp_1711
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -115
Score: 4.9
Sequence: TAATGTGATCTTGTTATCAATT
Locus tag: swp_2869
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
hmgR
Tyrosine degradation transcriptional regulator, LysR family

Position: -127
Score: 4.4
Sequence: TTATGTGATTAGTCGCACACTG
Locus tag: swp_0035
Name: fadB
Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: swp_0034
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadB
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -311
Score: 4
Sequence: AGTTGTTAAGTCGCTCTCAATT
Locus tag: swp_1953
Name: Spea_1673
Funciton: hypothetical protein
Spea_1673
hypothetical protein

Position: -106
Score: 3.8
Sequence: TAGGGTGAGCAAAGTCACGATT
Position: -94
Score: 3.9
Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0428
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0429
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: swp_0430
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_0431
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1
Fumarate reductase cytochrome b subunit
fdrC2
Fumarate reductase cytochrome b subunit
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -140
Score: 5
Sequence: TAGTGTGATTTAGCTCACGCTA
Locus tag: swp_1653
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: swp_1654
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
fahA
Fumarylacetoacetate hydrolase family protein
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)

Position: -76
Score: 4.6
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: swp_3757
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2
Ribosome hibernation protein YfiA

Position: -104
Score: 4.1
Sequence: AACCTTGATCTTAATCATAATT
Locus tag: swp_4367
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: swp_4368
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: swp_4369
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Sfri_4035
Conserved hypothetical signal peptide protein
Sfri_4034
FMN-binding domain-containing protein
Sfri_4033
PepSY-associated TM helix domain-containing protein

Position: -318
Score: 4.3
Sequence: TGAGGTGATGCATATCATAAAA
Locus tag: swp_4060
Name: swp_4060
Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
swp_4060
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A

Position: -322
Score: 3.9
Sequence: TAATGCAATTGGTATTACAATA
Locus tag: swp_4339
Name: Sputcn32_0834
Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: swp_4340
Name: asnC
Funciton: regulatory protein AsnC
Sputcn32_0834
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
asnC
regulatory protein AsnC

Position: -184
Score: 4.3
Sequence: TAGTTTGATGGAGCGCACGTTT
Locus tag: swp_2923
Name: null
Funciton: cytochrome c3
cytochrome c3

Position: -191
Score: 4.4
Sequence: AACTGTGAAACAACTCACAAAG
Locus tag: swp_1238
Name: psrA
Funciton: polysulfide reductase, subunit A
Locus tag: swp_1239
Name: psrB
Funciton: polysulfide reductase, subunit B
Locus tag: swp_1240
Name: psrC
Funciton: polysulfide reductase, subunit C
psrA
polysulfide reductase, subunit A
psrB
polysulfide reductase, subunit B
psrC
polysulfide reductase, subunit C

Position: -308
Score: 4.2
Sequence: TTATGTGACAAATCTCTCAACT
Position: -185
Score: 4.6
Sequence: CAGTGTGACGTAGATCACGCTT
Locus tag: swp_3272
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD
periplasmic decaheme cytochrome c, MtrD
mtrE
outer membrane protein, MtrE
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -180
Score: 4.3
Sequence: TTTAGTGATAGAGCACACAGAA
Locus tag: swp_4302
Name: swp_4302
Funciton: hypothetical protein
swp_4302
hypothetical protein

Position: -276
Score: 3.7
Sequence: TATTTCAATAAGGATCAAATAT
Locus tag: swp_3472
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: swp_3471
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
etfB
electron transfer flavoprotein, beta subunit
etfA
electron transfer flavoprotein, alpha subunit

Position: -210
Score: 4.5
Sequence: ATGTGTGATCTGTATCACTCAG
Locus tag: swp_3737
Name: SO3541
Funciton: sodium:alanine symporter family protein
SO3541
sodium:alanine symporter family protein

Position: -147
Score: 4.1
Sequence: CAGCGTGATCTGCCGCACGTTT
Locus tag: swp_4077
Name: purT
Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
purT
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)

Position: -268
Score: 4.5
Sequence: ATATTAGATCTAAATCACACTT
Position: -238
Score: 3.9
Sequence: TAACGTTAGTTACCACACAAAA
Locus tag: swp_3549
Name: SO1603
Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: swp_3550
Name: SO1602
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: swp_3551
Name: Sputcn32_1325
Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: swp_3553
Name: SO1599
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
SO1603
putative transcriptional regulator, inferred for PFA pathway
SO1602
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Sputcn32_1325
omega-3 polyunsaturated fatty acid synthase PfaB
SO1599
omega-3 polyunsaturated fatty acid synthase subunit, PfaC

Position: -150
Score: 4.1
Sequence: AAACTTGATCTAGCCCACAATC
Locus tag: swp_4514
Name: omp35
Funciton: outer membrane porin
omp35
outer membrane porin

Position: -87
Score: 4.2
Sequence: GAATGTGATCTAGCTCACAGGT
Locus tag: swp_3059
Name: SO2589
Funciton: isopenicillin N synthase
SO2589
isopenicillin N synthase

Position: -309
Score: 4.2
Sequence: TTTATTGATAAGGTTCAAAAAA
Locus tag: swp_0755
Name: crp
Funciton: Cyclic AMP receptor protein Crp
crp
Cyclic AMP receptor protein Crp

Position: -212
Score: 5
Sequence: ATTTGTGATTTAAATCGCGTTA
Position: -112
Score: 3.8
Sequence: ATATTCGAACTACATCAAATTG
Locus tag: swp_2043
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: swp_2042
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: swp_2041
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: swp_2040
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: swp_2039
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone

Position: -166
Score: 4.2
Sequence: AAGTATGACTTACTTAACAAAA
Locus tag: swp_5018
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative

Position: -97
Score: 3.3
Sequence: TTATATAATGATTTTTATATTT
Locus tag: swp_4118
Name: null
Funciton: hypothetical protein
Locus tag: swp_4117
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: swp_4116
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: swp_4115
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
hypothetical protein
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD

Position: -94
Score: 3.9
Sequence: TTTGTTGATCTATCTCACTGTT
Locus tag: swp_0429
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: swp_0430
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: swp_0431
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
fdrC
fumarate reductase cytochrome b subunit
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -153
Score: 3.6
Sequence: ACTTGTGAAGTGTATCATTGTT
Locus tag: swp_2753
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
ydhD
Probable monothiol glutaredoxin ydhD

Position: -106
Score: 4.4
Sequence: TAAAGTGAGGTAGAGCACATTC
Locus tag: swp_2053
Name: ppc
Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: swp_2052
Name: yceB
Funciton: uncharacterized lipoprotein YceB precursor
ppc
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
yceB
uncharacterized lipoprotein YceB precursor

Position: -113
Score: 4.5
Sequence: GATTGTGATCAGTATCAAACAA
Locus tag: swp_4749
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
lpdA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)

Position: -177
Score: 4.1
Sequence: TGATGTGATAAAAAGCACTCAT
Locus tag: swp_3409
Name: null
Funciton: hypothetical protein swp_3409
Locus tag: swp_3408
Name: yfiA-1
Funciton: ribosomal subunit interface protein
hypothetical protein swp_3409
yfiA-1
ribosomal subunit interface protein

Position: -306
Score: 4
Sequence: TAAGGTTAACCTGATCACACTT
Position: -88
Score: 4.8
Sequence: AAACATGATCTAACTCACAAAT
Locus tag: swp_4703
Name: SO4134
Funciton: Protein of unknown function DUF465
SO4134
Protein of unknown function DUF465

Position: -108
Score: 4.7
Sequence: AAAAGTGATATTGCTCTCAAAT
Locus tag: swp_1821
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein

Position: -133
Score: 4
Sequence: GAAAGTGATCGAGCTCAACTAT
Locus tag: swp_4577
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: swp_4578
Name: SO4143
Funciton: hypothetical protein
Locus tag: swp_4579
Name: SO4144
Funciton: octaheme tetrathionate reductase
SO4142
cytochrome c family protein
SO4143
hypothetical protein
SO4144
octaheme tetrathionate reductase

Position: -222
Score: 4.3
Sequence: TGAGGTGATTAGTGTCACAAAA
Locus tag: swp_5009
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: swp_5008
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: swp_5007
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: swp_5006
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: swp_5005
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: swp_5004
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: swp_5002
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: swp_5001
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
moaA
molybdenum cofactor biosynthesis protein MoaA
moaB
molybdenum cofactor biosynthesis protein MoaB
moaC
molybdenum cofactor biosynthesis protein MoaC
moaD
molybdenum cofactor biosynthesis protein MoaD
moaE
molybdenum cofactor biosynthesis protein MoaE
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)

Position: -276
Score: 3.8
Sequence: ATTTGAGATCTAAAAAAAAATA
Locus tag: swp_4806
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
cymA
membrane anchored tetraheme cytochrome c, CymA

Position: -46
Score: 3.9
Sequence: AAAACAGATCTAAATCACAAAA
Locus tag: swp_4100
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
mdh
malate dehydrogenase (EC 1.1.1.37)

Position: -69
Score: 5.2
Sequence: AAATGTGATCTGTCTTACATTT
Locus tag: swp_3928
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: swp_3930
Name: lipA
Funciton: Lipoate synthase
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
lipA
Lipoate synthase

Position: -97
Score: 3.5
Sequence: AATTGTGACGTAGACCCGCAAA
Locus tag: swp_2312
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -286
Score: 4.5
Sequence: AATCGTGACTTTGCTCACCCTA
Locus tag: swp_0427
Name: prmA
Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: swp_0426
Name: nifR3
Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: swp_0425
Name: fis
Funciton: DNA-binding protein Fis
prmA
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
nifR3
tRNA dihydrouridine synthase B (EC 1.-.-.-)
fis
DNA-binding protein Fis

Position: -105
Score: 4.5
Sequence: AAAGGTGAACTAGATCACAAAG
Locus tag: swp_1085
Name: Shew_1222
Funciton: hypothetical protein
Shew_1222
hypothetical protein

Position: -177
Score: 3.9
Sequence: ACCTATGATTAATATCACACAT
Locus tag: swp_4513
Name: Shewana3_0734
Funciton: outer membrane porin, putative
Shewana3_0734
outer membrane porin, putative

Position: -237
Score: 4.5
Sequence: CTGAGTGATACAGATCACACAT
Position: -96
Score: 3.8
Sequence: AAATAAGATACAGGACACATTT
Locus tag: swp_3738
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)

Position: -366
Score: 4.9
Sequence: AGTCGTGATCTAAATCACGTTT
Locus tag: swp_3756
Name: SO3421
Funciton: b-type cytochrome, putative
SO3421
b-type cytochrome, putative

Position: -113
Score: 4
Sequence: GAAGTTGATCTTGCTCACAAAA
Locus tag: swp_1052
Name: SO3683
Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: swp_1051
Name: SO3684
Funciton: transcriptional regulator, TetR family
SO3683
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
SO3684
transcriptional regulator, TetR family

Position: -176
Score: 4.4
Sequence: TTTTGTGACACTAATCACCTCA
Locus tag: swp_5010
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Position: -220
Score: 3.8
Sequence: GAAAGTGACTTAAATCGCGTTT
Locus tag: swp_1671
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -42
Score: 4.4
Sequence: TAAGGTGATCTCTTTCATAGTT
Locus tag: swp_3762
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: swp_3761
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
hcp
Hydroxylamine reductase (EC 1.7.-.-)
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
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