Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella pealeana ATCC 700345

Properties
Regulator type: Transcription factor
TF locus tag: Spea_3509
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 294
- Operons 148
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -157
Score: 4.1
Sequence: ATTCGCGACCGAGCTCACGAAT
Position: -116
Score: 4.1
Sequence: CTGCGTGATCCATTTCAACTTT
Locus tag: Spea_0321
Name: SO1410
Funciton: conserved domain protein
SO1410
conserved domain protein

Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: Spea_0100
Name: cytcB
Funciton: diheme cytochrome c4
cytcB
diheme cytochrome c4

Position: -87
Score: 5.3
Sequence: AAGTGTGATCTTGATCGCATTT
Locus tag: Spea_0374
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaA
Adenylate cyclase (EC 4.6.1.1)

Position: -146
Score: 4.2
Sequence: AAACGTGAGATCGCTCACTCTT
Locus tag: Spea_2980
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)

Position: -137
Score: 4.8
Sequence: TTTTGTGATCTAAGTAGCAAAA
Locus tag: Spea_0430
Name: SO0439
Funciton: hypothetical protein
SO0439
hypothetical protein

Position: -261
Score: 4.6
Sequence: ATATGGGAGTTGTATCACATTT
Locus tag: Spea_4071
Name: Swoo_4104
Funciton: choline-glycine betaine transporter
Swoo_4104
choline-glycine betaine transporter

Position: -85
Score: 3.9
Sequence: CAAGGTGATTCAAGTCACACTC
Locus tag: Spea_1861
Name: rarD
Funciton: RarD protein
rarD
RarD protein

Position: -187
Score: 4.1
Sequence: TTTAGTGATGTTTTTTAGATTA
Locus tag: Spea_3022
Name: SO1247
Funciton: hypothetical protein
SO1247
hypothetical protein

Position: -89
Score: 4.8
Sequence: ATTTTTGATTCAGTTCACAAAC
Locus tag: Spea_1016
Name: SO1328
Funciton: transcriptional regulator, LysR family
SO1328
transcriptional regulator, LysR family

Position: -68
Score: 3.9
Sequence: AAATTTGATCTATGCCTCGTTT
Locus tag: Spea_1234
Name: fadE
Funciton: acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE
acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -101
Score: 4.9
Sequence: ATTTGTGATCTTGATTGCAAAT
Locus tag: Spea_3654
Name: Spea_3654
Funciton: histidinol-phosphate aminotransferase (EC 2.6.1.9)
Spea_3654
histidinol-phosphate aminotransferase (EC 2.6.1.9)

Position: -246
Score: 3.8
Sequence: TGGCGTGACGTGTGTCACTCTT
Locus tag: Spea_0890
Name: SO3588
Funciton: gpr1/fun34/yaaH family protein
SO3588
gpr1/fun34/yaaH family protein

Position: -193
Score: 5.2
Sequence: TTTTGTGATCTTCGTCACCTAT
Locus tag: Spea_2930
Name: SO1482
Funciton: tonB-dependent receptor, putative
SO1482
tonB-dependent receptor, putative

Position: -129
Score: 5.2
Sequence: AATTGTGATGAAAATCAAATTA
Locus tag: Spea_3949
Name: pilZ
Funciton: type IV pilus assembly PilZ
pilZ
type IV pilus assembly PilZ

Position: -98
Score: 3.9
Sequence: TTAGGCGATCCGACTAACAATT
Locus tag: Spea_3555
Name: bfd
Funciton: bacterioferritin-associated ferredoxin
bfd
bacterioferritin-associated ferredoxin

Position: -138
Score: 4.3
Sequence: ATTTGTGATTTGTCTGGCAATT
Locus tag: Spea_2542
Name: SO2637
Funciton: hypothetical protein
SO2637
hypothetical protein

Position: -247
Score: 4.1
Sequence: ATTCGTGAGTCAGCTCTCGAAT
Position: -138
Score: 4.5
Sequence: TTATATGACGTAATTCACAAAG
Locus tag: Spea_0326
Name: SO1415
Funciton: transcriptional regulator, TetR family
SO1415
transcriptional regulator, TetR family

Position: -124
Score: 4.3
Sequence: AAGTTTGTCTTAGATCACATTT
Locus tag: Spea_3882
Name: SO0355
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: Spea_3883
Name: SO0354
Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
SO0355
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO0354
inner membrane protein YrbG, predicted calcium/sodium:proton antiporter

Position: -118
Score: 4.3
Sequence: ATAGGTGATCTTTATCATAGTA
Locus tag: Spea_0248
Name: SO0296
Funciton: integral membrane domain protein
SO0296
integral membrane domain protein

Position: -227
Score: 4.2
Sequence: TTTCATGAACGATGTCACATTA
Position: -149
Score: 3.8
Sequence: GAGTGTGACTAACGTCTCATTT
Locus tag: Spea_3438
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Spea_3439
Name: SO0941
Funciton: hypothetical protein
cadC
transcriptional regulator-related protein
SO0941
hypothetical protein

Position: -138
Score: 4.8
Sequence: AAGTGTGATCTAAATCTAATTA
Locus tag: Spea_3047
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Spea_3046
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Spea_3045
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
deoA
thymidine phosphorylase (EC 2.4.2.4)
deoB
phosphopentomutase (EC 5.4.2.7)
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)

Position: -77
Score: 4.4
Sequence: CTGTGCGATCTGTGTCACAATT
Locus tag: Spea_1069
Name: swp_3747
Funciton: hypothetical protein
swp_3747
hypothetical protein

Position: -173
Score: 4.3
Sequence: ATTTGTGAACTAGATCAACACT
Locus tag: Spea_0624
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: Spea_0623
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Spea_0622
Name: napG
Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: Spea_0621
Name: napH
Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Spea_0620
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
napD
periplasmic nitrate reductase component NapD
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
napG
ferredoxin-type protein NapG (periplasmic nitrate reductase)
napH
polyferredoxin NapH (periplasmic nitrate reductase)
napB
nitrate reductase cytochrome c550-type subunit

Position: -120
Score: 4.2
Sequence: TAGTGTTAACTGTGTCAAATAA
Locus tag: Spea_2091
Name: SO1419
Funciton: lipoprotein, putative
Locus tag: Spea_2092
Name: SO1420
Funciton: outer membrane porin, putative
SO1419
lipoprotein, putative
SO1420
outer membrane porin, putative

Position: -166
Score: 3.8
Sequence: TTACGTGCTGAATTGCAAAATT
Position: -69
Score: 3.8
Sequence: AATTGTTACGCATCTTACGCTA
Locus tag: Spea_2476
Name: yceI
Funciton: hypothetical protein
Locus tag: Spea_2475
Name: SO2891
Funciton: type IIA topoisomerase, B subunit
yceI
hypothetical protein
SO2891
type IIA topoisomerase, B subunit

Position: -185
Score: 4.1
Sequence: TTTATTGATCTAGCTCAATTTT
Position: -166
Score: 4.4
Sequence: TTTTGTGAGTCCGATAGCAAAT
Locus tag: Spea_3494
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Spea_3493
Name: cydC
Funciton: Transport ATP-binding protein CydC
cydD
Transport ATP-binding protein CydD
cydC
Transport ATP-binding protein CydC

Position: -78
Score: 4.2
Sequence: AACTATGATCTGGTTCTAATTT
Locus tag: Spea_3536
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Spea_3535
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Spea_3534
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Spea_3533
Name: sspA
Funciton: stringent starvation protein A
Locus tag: Spea_3532
Name: sspB
Funciton: stringent starvation protein B
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
sspA
stringent starvation protein A
sspB
stringent starvation protein B

Position: -195
Score: 4.2
Sequence: AAGTGTGATCTGCAGCTAACTA
Locus tag: Spea_2535
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)

Position: -62
Score: 4.1
Sequence: TATTTTGATATTGATGAAATTA
Locus tag: Spea_1944
Name: ycbW
Funciton: probable membrane protein YcbW
ycbW
probable membrane protein YcbW

Position: -109
Score: 4.3
Sequence: TTTTGTGTGTTAGTTAACAAAA
Locus tag: Spea_4186
Name: SO0075
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO0075
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -123
Score: 4.2
Sequence: ATAGTTGATCTAGTTCAAACTA
Locus tag: Spea_4142
Name: null
Funciton: hypothetical protein
Locus tag: Spea_4141
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Spea_4140
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Spea_4139
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Spea_4138
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Spea_4137
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Spea_4136
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Spea_4135
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
hypothetical protein
SO4505
hypothetical protein probably related to Formate dehydrogenase function
SO4506
iron-sulfur cluster-binding protein
SO4507
putative formate dehydrogenase-specific chaperone
SO4508
formate dehydrogenase subunit or accessory protein
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)

Position: -100
Score: 4.8
Sequence: ATATTTGATCCAGCTCAAACTT
Locus tag: Spea_1591
Name: Sfri_2271
Funciton: permease of the major facilitator superfamily
Locus tag: Spea_1592
Name: Sfri_2272
Funciton: hypothetical protein
Locus tag: Spea_1593
Name: Sfri_2273
Funciton: nitrogen regulatory protein P-II
Locus tag: Spea_1594
Name: Sfri_2274
Funciton: hypothetical protein
Sfri_2271
permease of the major facilitator superfamily
Sfri_2272
hypothetical protein
Sfri_2273
nitrogen regulatory protein P-II
Sfri_2274
hypothetical protein

Position: -196
Score: 3.8
Sequence: TATAGCGATAAAGTTAAAAAAT
Locus tag: Spea_3774
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Spea_3773
Name: mshH
Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Spea_3772
Name: mshI
Funciton: MSHA biogenesis protein MshI
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)
mshH
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
mshI
MSHA biogenesis protein MshI

Position: -148
Score: 4.1
Sequence: CAATGTGTTGCATGGCACATAA
Locus tag: Spea_0662
Name: cobA
Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Spea_0663
Name: cysD
Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: Spea_0664
Name: cysN
Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: Spea_0665
Name: Shew_1424
Funciton: sulfate permease, Trk-type
Locus tag: Spea_0666
Name: cysC
Funciton: adenylylsulfate kinase (EC 2.7.1.25)
cobA
uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
cysD
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
cysN
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Shew_1424
sulfate permease, Trk-type
cysC
adenylylsulfate kinase (EC 2.7.1.25)

Position: -172
Score: 4.9
Sequence: ATATTTGAAGTGTTTCACATAA
Locus tag: Spea_2491
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -112
Score: 4.9
Sequence: TTTTTTGATCTAGTACACATAT
Locus tag: Spea_0140
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)

Position: -147
Score: 4.1
Sequence: CGATATGATTTGGATCACTTTT
Position: -82
Score: 4.2
Sequence: AATAGTGATATACATCACAAGG
Locus tag: Spea_0734
Name: SO3987
Funciton: hypothetical protein
SO3987
hypothetical protein

Position: -41
Score: 4.4
Sequence: AACTGTGACAAAGATCACTATT
Locus tag: Spea_3921
Name: Spea_3921
Funciton: hypothetical protein
Spea_3921
hypothetical protein

Position: -85
Score: 4.7
Sequence: AAGTGTGACCAGGTTCACGAAT
Locus tag: Spea_3708
Name: Sama_3134
Funciton: membrane protein
Sama_3134
membrane protein

Position: -86
Score: 4.4
Sequence: AACCGTGATCTGGATCACTGAT
Locus tag: Spea_1784
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Spea_1785
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Spea_1786
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Spea_1787
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Spea_1788
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Spea_1789
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Spea_1790
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Spea_1791
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)

Position: -127
Score: 3.9
Sequence: ATTATTGCCACTCATCACATTT
Locus tag: Spea_3490
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

Position: -183
Score: 4
Sequence: ATACTTGATTACATTAACAAAT
Position: -155
Score: 3.8
Sequence: AAGTGTGAGCAACAACACGTTC
Position: -71
Score: 4.1
Sequence: ATAAGTGATTAAATTCAACCTT
Locus tag: Spea_0831
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
nrfA
cytochrome c552 precursor (EC 1.7.2.2)

Position: -113
Score: 4.6
Sequence: GAGTTTGATCTAGCTCACAATT
Locus tag: Spea_3357
Name: SO3683
Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: Spea_3358
Name: SO3684
Funciton: transcriptional regulator, TetR family
SO3683
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
SO3684
transcriptional regulator, TetR family

Position: -267
Score: 5.2
Sequence: TTGTGTGATCTGTATAACATTA
Locus tag: Spea_4039
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit FixA
Locus tag: Spea_4040
Name: fixB
Funciton: electron transfer flavoprotein, alpha subunit FixB
Locus tag: Spea_4041
Name: fixC
Funciton: probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
Locus tag: Spea_4042
Name: fixX
Funciton: ferredoxin-like protein FixX
fixA
electron transfer flavoprotein, beta subunit FixA
fixB
electron transfer flavoprotein, alpha subunit FixB
fixC
probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)
fixX
ferredoxin-like protein FixX

Position: -146
Score: 4.7
Sequence: ATACGTGATATTTTTCACTTTA
Locus tag: Spea_0282
Name: SO0321
Funciton: hypothetical protein
SO0321
hypothetical protein

Position: -102
Score: 4.7
Sequence: AATTGTGAGCTAGATCAAACTC
Locus tag: Spea_3356
Name: null
Funciton: hypothetical protein
Locus tag: Spea_3355
Name: SO3681
Funciton: universal stress protein family
Locus tag: Spea_3354
Name: Shewana3_3248
Funciton: UspA domain-containing protein
hypothetical protein
SO3681
universal stress protein family
Shewana3_3248
UspA domain-containing protein

Position: -262
Score: 4.3
Sequence: TAAAGTGATCGCGATCACACCG
Position: -152
Score: 4.4
Sequence: AATAGTGACAAACATCACATCA
Locus tag: Spea_2663
Name: nadC
Funciton: di-and tricarboxylate transporter
nadC
di-and tricarboxylate transporter

Position: -32
Score: 4.4
Sequence: TTATTTGACACAGTTAACACTA
Locus tag: Spea_2090
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
apbE
thiamin biosynthesis lipoprotein ApbE

Position: -306
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Spea_2600
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Spea_2601
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Spea_2602
Name: null
Funciton: hypothetical protein
Locus tag: Spea_2603
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Spea_2604
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Spea_2605
Name: SO3095
Funciton: hypothetical protein
SO3090
MoxR-like ATPase in aerotolerance operon
SO3091
Conserved hypothetical protein
hypothetical protein
SO3093
von Willebrand factor type A domain protein
SO3094
TPR domain protein in aerotolerance operon
SO3095
hypothetical protein

Position: -100
Score: 4.6
Sequence: TCATTTGACTTAGATCACAAAT
Locus tag: Spea_1019
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
cyaC
Adenylate cyclase (EC 4.6.1.1)

Position: -96
Score: 3.9
Sequence: TTTTGTGCACATCTTCAAAGTT
Locus tag: Spea_0303
Name: ygbA
Funciton: nitrosative stress induced protein
ygbA
nitrosative stress induced protein

Position: -158
Score: 4
Sequence: AAACGCGATATAAATCACTTTC
Locus tag: Spea_1465
Name: SO3120
Funciton: oxidoreductase, Gfo/Idh/MocA family
SO3120
oxidoreductase, Gfo/Idh/MocA family

Position: -104
Score: 4.2
Sequence: TAATTTGAAAAAAAGCACAAAT
Locus tag: Spea_2886
Name: map
Funciton: methionine aminopeptidase (EC 3.4.11.18)
map
methionine aminopeptidase (EC 3.4.11.18)

Position: -138
Score: 4.1
Sequence: AACTGGTATTTTGATCACATTT
Locus tag: Spea_3516
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Spea_3515
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Spea_3514
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)

Position: -268
Score: 4
Sequence: TTATATAATTTAGATCAAGTTT
Position: -160
Score: 4.8
Sequence: AAGTGTGATCGGATTCATACTT
Locus tag: Spea_0425
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)

Position: -230
Score: 4.4
Sequence: CAATTTGATGTAGTTCGAATAT
Position: -130
Score: 4
Sequence: TGGCGAGATTAATATCACAAAA
Locus tag: Spea_0216
Name: scyA
Funciton: cytochrome c-type protein
scyA
cytochrome c-type protein

Position: -140
Score: 4
Sequence: TTTTGTGAGGTAGGTAAAGCTA
Position: -98
Score: 3.8
Sequence: CCTCGTGATCTGTTTCATGTAA
Locus tag: Spea_0673
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Spea_0674
Name: SO3719
Funciton: hypothetical protein
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
SO3719
hypothetical protein

Position: -138
Score: 4.1
Sequence: AAGCTTGATCCTCTTCACGCTA
Locus tag: Spea_0457
Name: Sputcn32_0539
Funciton: mechanosensitive ion channel
Sputcn32_0539
mechanosensitive ion channel

Position: -92
Score: 4.7
Sequence: AAGTGTGATCGGCTTAACCTTT
Locus tag: Spea_0460
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
udp
Uridine phosphorylase (EC 2.4.2.3)

Position: -109
Score: 4
Sequence: GAACGTGTTGTTGCTCACACTT
Position: -81
Score: 3.8
Sequence: ATTTGTTAATGTAATCAAGTAT
Locus tag: Spea_0830
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Spea_0829
Name: narP
Funciton: Nitrate/nitrite response regulator protein
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
narP
Nitrate/nitrite response regulator protein

Position: -164
Score: 4.4
Sequence: AAGTATGATCCGCTTAACAAAA
Locus tag: Spea_4126
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative

Position: -63
Score: 4
Sequence: AAATTGAACCTAGATCACATTA
Locus tag: Spea_1874
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)

Position: -96
Score: 3.8
Sequence: TAGCGTGAAGAGGATCAAGCTT
Locus tag: Spea_0458
Name: SO4138
Funciton: hypothetical protein
SO4138
hypothetical protein

Position: -247
Score: 5.5
Sequence: TTATGTGATGCGTATCACACTT
Position: -158
Score: 4.2
Sequence: AGTTGAGAGTTTTGTCACATAA
Locus tag: Spea_2691
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Spea_2690
Name: feoB
Funciton: Ferrous iron transport protein B
feoA
Ferrous iron transport protein A
feoB
Ferrous iron transport protein B

Position: -251
Score: 3.9
Sequence: TAGTGTGGGTTTAGTCACACTT
Locus tag: Spea_2569
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
SO2753
prolyl endopeptidase (EC 3.4.21.26)

Position: -196
Score: 4.4
Sequence: TTTTGAGTTCTATCTCACAATT
Locus tag: Spea_2392
Name: SO2535
Funciton: Predicted glutamine amidotransferase
SO2535
Predicted glutamine amidotransferase

Position: -138
Score: 4.5
Sequence: AATATTGAGCAAGATCACATTT
Locus tag: Spea_2783
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Spea_2782
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Spea_2781
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Spea_2780
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Spea_2779
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Spea_2778
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Spea_2777
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Locus tag: Spea_2776
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
atoB
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
mmsA
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
SO1679
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
SO1680
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
SO1681
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
mmsB
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATAA
Locus tag: Spea_0100
Name: cytcB
Funciton: Cytochrome c4
cytcB
Cytochrome c4

Position: -113
Score: 4.3
Sequence: AAGAGTGAGCGATCTCACGTTT
Locus tag: Spea_2979
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)

Position: -303
Score: 3.9
Sequence: TAAATTGACCTGTATAACCTTA
Position: -201
Score: 4
Sequence: TAAAGTGATTTTTTTTGCAGAT
Locus tag: Spea_1014
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
SO1326
COG1242: Predicted Fe-S oxidoreductase

Position: -96
Score: 4.7
Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: Spea_0101
Name: engB
Funciton: GTP-binding protein EngB
engB
GTP-binding protein EngB

Position: -183
Score: 4.2
Sequence: TAGTTTGAACTAGATCAACTAT
Position: -87
Score: 3.9
Sequence: AAGTGTGATCGACCACTAACTT
Position: -20
Score: 3.9
Sequence: TTGCGTGACAAGGATAAAAAAT
Locus tag: Spea_4143
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Spea_4144
Name: SO4502
Funciton: conserved domain protein
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
SO4502
conserved domain protein

Position: -133
Score: 5
Sequence: AAATGCGATCAAGATCACACTT
Locus tag: Spea_0373
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Spea_0372
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Spea_0371
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Spea_0370
Name: hemY
Funciton: HemY domain-containing protein
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
hemX
Homolog of E. coli HemX protein
hemY
HemY domain-containing protein

Position: -51
Score: 4.1
Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: Spea_1505
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -164
Score: 4.1
Sequence: ATGCGTGAGGTGAGTCACGCTT
Position: -135
Score: 3.7
Sequence: AAGCTTGATCGTTATAACCCTA
Locus tag: Spea_1009
Name: Sbal_1323
Funciton: HTH-type transcriptional regulator BetI
Locus tag: Spea_1008
Name: Sbal_1324
Funciton: betaine aldehyde dehydrogenase (EC 1.2.1.8)
Locus tag: Spea_1007
Name: Sbal_1325
Funciton: choline dehydrogenase (EC 1.1.99.1)
Locus tag: Spea_1006
Name: Sden_0716
Funciton: predicted choline transporter BetT-II
Locus tag: Spea_1005
Name: Sbal_1327
Funciton: conserved hypothetical protein 2001
Locus tag: Spea_1004
Name: marR
Funciton: transcriptional regulator, MarR family
Sbal_1323
HTH-type transcriptional regulator BetI
Sbal_1324
betaine aldehyde dehydrogenase (EC 1.2.1.8)
Sbal_1325
choline dehydrogenase (EC 1.1.99.1)
Sden_0716
predicted choline transporter BetT-II
Sbal_1327
conserved hypothetical protein 2001
marR
transcriptional regulator, MarR family

Position: -161
Score: 4.2
Sequence: TTAAGAGATCTAGCTCTCAATT
Locus tag: Spea_0771
Name: SO0919
Funciton: Serine transporter, putative
Locus tag: Spea_0772
Name: Sfri_0687
Funciton: L-serine dehydratase (EC 4.3.1.17)
SO0919
Serine transporter, putative
Sfri_0687
L-serine dehydratase (EC 4.3.1.17)

Position: -110
Score: 3.7
Sequence: AAAAATGACCAATGTCATAATT
Locus tag: Spea_3709
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)

Position: -133
Score: 4.4
Sequence: CAGCGTGATTCTGATCGCATTT
Locus tag: Spea_3103
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Spea_3102
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Spea_3101
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Spea_3100
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Spea_3099
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Spea_3098
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)

Position: -77
Score: 4.4
Sequence: CTGTGCGATCTGTGTCACAATT
Locus tag: Spea_1069
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -286
Score: 3.9
Sequence: TTTTGCGATTTAAAAAACGTAA
Position: -264
Score: 3.9
Sequence: AGTTGTGATTTTTATATCTAAA
Locus tag: Spea_0503
Name: mccA
Funciton: cytochrome c, putative
mccA
cytochrome c, putative

Position: -128
Score: 4.5
Sequence: GATTGTGATCAGCATCAAACAA
Locus tag: Spea_0421
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
lpdA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)

Position: -156
Score: 5
Sequence: TTATGTGATGATAATCAAAATT
Locus tag: Spea_2448
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Position: -259
Score: 4.3
Sequence: ATGTGTGACGCTTGTCACGGTT
Locus tag: Spea_0591
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL

Position: -149
Score: 4
Sequence: TTTTGCTACCCTTATCACATAC
Locus tag: Spea_3971
Name: menD
Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: Spea_3972
Name: SO4574
Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: Spea_3973
Name: menC
Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: Spea_3974
Name: SO4576
Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
SO4574
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
menC
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
SO4576
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)

Position: -106
Score: 3.8
Sequence: ATTTGTGAGCTAGCTTGTGTTT
Locus tag: Spea_4170
Name: hutC
Funciton: histidine utilization repressor
Locus tag: Spea_4169
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Spea_4168
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
hutC
histidine utilization repressor
hutU
urocanate hydratase (EC 4.2.1.49)
hutH
histidine ammonia-lyase (EC 4.3.1.3)

Position: -255
Score: 4.9
Sequence: AGTCGTGATCTAAATCACGTTT
Locus tag: Spea_1061
Name: SO3421
Funciton: b-type cytochrome, putative
SO3421
b-type cytochrome, putative

Position: -181
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: Spea_0432
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Spea_0431
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)

Position: -104
Score: 3.8
Sequence: TGGTTAGATCTTCATCACATTC
Locus tag: Spea_2608
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter

Position: -164
Score: 3.8
Sequence: AAGTGTGATCTACTCTGTATTT
Locus tag: Spea_3824
Name: SO4232
Funciton: long-chain fatty acid transport protein
SO4232
long-chain fatty acid transport protein

Position: -84
Score: 4.4
Sequence: AATTGTGAATAACGTCACACAG
Locus tag: Spea_1483
Name: SO2806
Funciton: hypothetical protein
SO2806
hypothetical protein

Position: -143
Score: 4.4
Sequence: AAACATGATCCAGTTCACAACA
Position: -102
Score: 4
Sequence: AAATGTGACTCAACCCAAGATA
Locus tag: Spea_3636
Name: modE
Funciton: molybdate-binding domain of ModE
modE
molybdate-binding domain of ModE

Position: -80
Score: 3.8
Sequence: TATTGTGGCCATAGTTACATTT
Locus tag: Spea_4030
Name: swp_4930
Funciton: transcriptional regulator, LysR family
swp_4930
transcriptional regulator, LysR family

Position: -162
Score: 4.3
Sequence: AAATGTGATGTTTAACTCAAAC
Locus tag: Spea_2038
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)

Position: -197
Score: 4.2
Sequence: TTTTGCTACATAGATCGCATAT
Locus tag: Spea_3733
Name: SO0543
Funciton: hypothetical protein
SO0543
hypothetical protein

Position: -143
Score: 3.9
Sequence: AAACTTGATTAAGATCGCGGAT
Locus tag: Spea_4065
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
prlC
Oligopeptidase A (EC 3.4.24.70)

Position: -116
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Spea_2599
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Spea_2598
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)

Position: -126
Score: 4.9
Sequence: AACTGTGATCGGGTTAACAATT
Locus tag: Spea_1448
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Spea_1449
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)

Position: -219
Score: 4.1
Sequence: TACCTTGATCTAGATCAACTTA
Position: -176
Score: 4.6
Sequence: TTTTTTGATATAGCTCAAGTAT
Locus tag: Spea_2214
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Spea_2215
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Spea_2216
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Spea_2217
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP

Position: -327
Score: 4
Sequence: AAATGAGACGTTAGTCACACTC
Position: -249
Score: 4.5
Sequence: TAATGTGACATCGTTCATGAAA
Locus tag: Spea_3437
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Spea_3436
Name: null
Funciton: hypothetical protein
SO0939
split-soret diheme cytochrome c
hypothetical protein

Position: -114
Score: 4.3
Sequence: TAATGTGATCTAGGTTCAATTT
Locus tag: Spea_1875
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
hmgR
Tyrosine degradation transcriptional regulator, LysR family

Position: -159
Score: 4.4
Sequence: TATTGTGATCTAGATCCTTTTA
Locus tag: Spea_2787
Name: ompW
Funciton: outer membrane protein W precursor
ompW
outer membrane protein W precursor

Position: -134
Score: 4.6
Sequence: TTTTGTGATTCGTCGCACACTG
Locus tag: Spea_0018
Name: fadB
Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Spea_0017
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadB
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -143
Score: 4.2
Sequence: AAGTGTGGTGATAATCACGTTA
Locus tag: Spea_3648
Name: scrA
Funciton: aminotransferase class V
scrA
aminotransferase class V

Position: -311
Score: 4.2
Sequence: AGTTGTTAACTGGATCTCAAAT
Locus tag: Spea_1673
Name: Spea_1673
Funciton: hypothetical protein
Spea_1673
hypothetical protein

Position: -138
Score: 4.7
Sequence: ATTTGTGATCTTGATCTAATAG
Position: -106
Score: 4
Sequence: AAGGGTGAGTTCCTTCACGAAA
Position: -94
Score: 4.1
Sequence: TTTGTTGATCTATCTCACGGTT
Locus tag: Spea_0392
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Spea_0393
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Spea_0394
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Spea_0395
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
frdC1
Fumarate reductase cytochrome b subunit
fdrC2
Fumarate reductase cytochrome b subunit
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -158
Score: 5.3
Sequence: AAGTGTGATTTCGTTCACACTA
Locus tag: Spea_1451
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Spea_1452
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
fahA
Fumarylacetoacetate hydrolase family protein
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)

Position: -76
Score: 4.6
Sequence: AAACGTGATTTAGATCACGACT
Locus tag: Spea_1060
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
yfiA-2
Ribosome hibernation protein YfiA

Position: -84
Score: 4.2
Sequence: AAGCGTGATCTAGCTCACTCAC
Locus tag: Spea_2507
Name: SO2589
Funciton: isopenicillin N synthase
SO2589
isopenicillin N synthase

Position: -106
Score: 4.4
Sequence: ATTATTGATCTTTATCAAAAAA
Locus tag: Spea_0712
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Spea_0711
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Spea_0710
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Sfri_4035
Conserved hypothetical signal peptide protein
Sfri_4034
FMN-binding domain-containing protein
Sfri_4033
PepSY-associated TM helix domain-containing protein

Position: -283
Score: 4.1
Sequence: TTATGTGCCATGCAACACATTG
Locus tag: Spea_0661
Name: swp_4060
Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
swp_4060
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A

Position: -161
Score: 4.3
Sequence: TATCGATATCTGCCTCACATAT
Position: -7
Score: 3.8
Sequence: ATTTATTATGGAAGTCCCATTT
Locus tag: Spea_0741
Name: null
Funciton: hypothetical protein
Locus tag: Spea_0740
Name: null
Funciton: methyltransferase type 12
Locus tag: Spea_0739
Name: null
Funciton: hypothetical protein
Locus tag: Spea_0738
Name: Sputcn32_0834
Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Spea_0737
Name: asnC
Funciton: regulatory protein AsnC
hypothetical protein
methyltransferase type 12
hypothetical protein
Sputcn32_0834
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
asnC
regulatory protein AsnC

Position: -117
Score: 4.7
Sequence: TTAGGTGATCTGCTTCACAAAC
Locus tag: Spea_3717
Name: Spea_3717
Funciton: hypothetical protein
Locus tag: Spea_3716
Name: omp_Zn
Funciton: zinc-regulated TonB-dependent outer membrane receptor
Locus tag: Spea_3715
Name: znuA
Funciton: zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: Spea_3714
Name: znuB
Funciton: zinc ABC transporter, inner membrane permease protein ZnuB
Spea_3717
hypothetical protein
omp_Zn
zinc-regulated TonB-dependent outer membrane receptor
znuA
zinc ABC transporter, periplasmic-binding protein ZnuA
znuB
zinc ABC transporter, inner membrane permease protein ZnuB

Position: -155
Score: 4.5
Sequence: TAATTTGATGGAGCGCACGTTT
Locus tag: Spea_1806
Name: null
Funciton: cytochrome c3
cytochrome c3

Position: -182
Score: 4.4
Sequence: AACTGTGAATTGCCTCACAAAC
Locus tag: Spea_3039
Name: psrA
Funciton: polysulfide reductase, subunit A
Locus tag: Spea_3038
Name: psrB
Funciton: polysulfide reductase, subunit B
Locus tag: Spea_3037
Name: psrC
Funciton: polysulfide reductase, subunit C
psrA
polysulfide reductase, subunit A
psrB
polysulfide reductase, subunit B
psrC
polysulfide reductase, subunit C

Position: -286
Score: 4.1
Sequence: TTATGTGACAAAACTCTCAACT
Position: -197
Score: 5.4
Sequence: AAGTGTGATACGCATCACATAA
Locus tag: Spea_2692
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Spea_2693
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Spea_2694
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Spea_2695
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD
periplasmic decaheme cytochrome c, MtrD
mtrE
outer membrane protein, MtrE
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA

Position: -183
Score: 4.4
Sequence: AAGCGTGATTGACCACACAAAA
Locus tag: Spea_2293
Name: swp_4302
Funciton: hypothetical protein
swp_4302
hypothetical protein

Position: -283
Score: 4.1
Sequence: TATTTGGATAAGGATCAAATAT
Locus tag: Spea_2855
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Spea_2854
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
etfB
electron transfer flavoprotein, beta subunit
etfA
electron transfer flavoprotein, alpha subunit

Position: -207
Score: 4.1
Sequence: AACTGTGATCTATATCGCTCAG
Locus tag: Spea_1077
Name: SO3541
Funciton: sodium:alanine symporter family protein
SO3541
sodium:alanine symporter family protein

Position: -176
Score: 4.4
Sequence: AAGAGTGATCTCGCCCACACTT
Locus tag: Spea_0871
Name: purT
Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
purT
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)

Position: -138
Score: 4.1
Sequence: AAGCTTGATCCTCTTCACGCTA
Locus tag: Spea_0457
Name: kefA
Funciton: mechanosensitive ion channel
kefA
mechanosensitive ion channel

Position: -269
Score: 3.9
Sequence: AAGCAAGATTTAGATCACACTT
Locus tag: Spea_2906
Name: SO1603
Funciton: putative transcriptional regulator, inferred for PFA pathway
Locus tag: Spea_2907
Name: SO1602
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Locus tag: Spea_2908
Name: Sputcn32_1325
Funciton: omega-3 polyunsaturated fatty acid synthase PfaB
Locus tag: Spea_2909
Name: SO1599
Funciton: omega-3 polyunsaturated fatty acid synthase subunit, PfaC
Locus tag: Spea_2910
Name: SO1597
Funciton: enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway
SO1603
putative transcriptional regulator, inferred for PFA pathway
SO1602
omega-3 polyunsaturated fatty acid synthase subunit, PfaA
Sputcn32_1325
omega-3 polyunsaturated fatty acid synthase PfaB
SO1599
omega-3 polyunsaturated fatty acid synthase subunit, PfaC
SO1597
enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9), inferred for PFA pathway

Position: -150
Score: 4.4
Sequence: AAACATGATCTAGTCCACAATT
Locus tag: Spea_0589
Name: omp35
Funciton: outer membrane porin
omp35
outer membrane porin

Position: -105
Score: 4.3
Sequence: AAGTTTGACTGCGTTCAAATAA
Locus tag: Spea_3546
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -225
Score: 3.6
Sequence: AGATGTGATATAAGCCTAATTG
Locus tag: Spea_3509
Name: crp
Funciton: Cyclic AMP receptor protein Crp
crp
Cyclic AMP receptor protein Crp

Position: -125
Score: 4.5
Sequence: AAAAGTGATCTCTTTCATAGTT
Locus tag: Spea_1055
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Spea_1056
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
hcp
Hydroxylamine reductase (EC 1.7.-.-)
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

Position: -212
Score: 4.1
Sequence: TTTTGTGATATTAATCTCGCCA
Position: -112
Score: 3.8
Sequence: ATATTCGAACTACATCAAATTG
Locus tag: Spea_0215
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Spea_0214
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Spea_0213
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Spea_0212
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Spea_0211
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone

Position: -127
Score: 3.4
Sequence: TTTTATGATGAATAAAACGTTC
Locus tag: Spea_3968
Name: null
Funciton: hypothetical protein
Locus tag: Spea_3967
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Spea_3966
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Spea_3965
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
hypothetical protein
nrfB
Cytochrome c-type protein NrfB precursor
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD

Position: -256
Score: 4.3
Sequence: TTTTGCGATTCAGATCACTTTG
Locus tag: Spea_3089
Name: Spea_3089
Funciton: hypothetical protein
Spea_3089
hypothetical protein

Position: -341
Score: 4.2
Sequence: TTTTGTGACCTCTCTATCCTTT
Locus tag: Spea_0479
Name: mccA
Funciton: cytochrome c, putative
mccA
cytochrome c, putative

Position: -235
Score: 4
Sequence: ATTCGGGATGGGTGTCACAAAG
Locus tag: Spea_1318
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Spea_1319
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB

Position: -94
Score: 4.1
Sequence: TTTGTTGATCTATCTCACGGTT
Locus tag: Spea_0393
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: Spea_0394
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Spea_0395
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
fdrC
fumarate reductase cytochrome b subunit
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)

Position: -154
Score: 3.6
Sequence: ACTTGTGAAGTGTATCATTGTT
Locus tag: Spea_1964
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
ydhD
Probable monothiol glutaredoxin ydhD

Position: -99
Score: 4.9
Sequence: CTATTTGATCGATATCACATTT
Locus tag: Spea_0459
Name: SO4134
Funciton: Protein of unknown function DUF465
SO4134
Protein of unknown function DUF465

Position: -276
Score: 4
Sequence: TTAGGTGACACAGGTCACACCA
Position: -241
Score: 4.1
Sequence: AACCGTGACAGATCTCACAATC
Locus tag: Spea_2994
Name: lldP
Funciton: L-lactate permease
Locus tag: Spea_2995
Name: dldD
Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
lldP
L-lactate permease
dldD
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing

Position: -211
Score: 4.6
Sequence: TTACGTGACCACGATCACCTTT
Locus tag: Spea_2033
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Spea_2032
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Spea_2031
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Spea_2030
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Spea_2029
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Spea_2028
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
hyaE
NiFe hydrogenase assembly chaperone, HyaE
hyaF
NiFe hydrogenase assembly protein, HypF

Position: -76
Score: 5.2
Sequence: AAATGTGATCCGTATTACATTT
Locus tag: Spea_3155
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Spea_3156
Name: lipA
Funciton: Lipoate synthase
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
lipA
Lipoate synthase

Position: -228
Score: 4.3
Sequence: CTTTGTGAATTACGTCATATAA
Position: -181
Score: 4.1
Sequence: CAGATTGATTCCTTTCACATTT
Position: -78
Score: 4.4
Sequence: TGGCGTGACTTAGTTCACCTTT
Locus tag: Spea_0325
Name: SO1414
Funciton: flavocytochrome c flavin subunit
Locus tag: Spea_0324
Name: SO1413
Funciton: flavocytochrome c heme subunit
SO1414
flavocytochrome c flavin subunit
SO1413
flavocytochrome c heme subunit

Position: -235
Score: 3.9
Sequence: CTGAGCGATATAGATCACAGTT
Locus tag: Spea_1076
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)

Position: -252
Score: 4.1
Sequence: CAGTGTGCGACGAATCACAAAA
Locus tag: Spea_0019
Name: pepQ
Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Spea_0020
Name: SO0023
Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Spea_0021
Name: trkH-1
Funciton: potassium uptake protein TrkH
Locus tag: Spea_0022
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
pepQ
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
SO0023
FIG000605: protein co-occurring with transport systems (COG1739)
trkH-1
potassium uptake protein TrkH
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)

Position: -248
Score: 3.8
Sequence: TATTTTGATGTTTACCTCGCAT
Locus tag: Spea_1223
Name: SO3406
Funciton: FIG024006: iron uptake protein
Locus tag: Spea_1222
Name: SO3407
Funciton: FIG138928: iron-regulated membrane protein
Locus tag: Spea_1221
Name: SO3408
Funciton: FIG016502: iron uptake protein
SO3406
FIG024006: iron uptake protein
SO3407
FIG138928: iron-regulated membrane protein
SO3408
FIG016502: iron uptake protein

Position: -64
Score: 4.8
Sequence: CATTGTGACTATGATCACAAAA
Locus tag: Spea_1970
Name: SO2871
Funciton: arsenate reductase (EC 1.20.4.1)
Locus tag: Spea_1969
Name: SO2872
Funciton: hypothetical protein
SO2871
arsenate reductase (EC 1.20.4.1)
SO2872
hypothetical protein

Position: -70
Score: 4.5
Sequence: AATTGTGAGATAGAACTCAAAA
Locus tag: Spea_2393
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -286
Score: 4.3
Sequence: AAGTATGAATCCGATCACACTT
Position: -178
Score: 4.1
Sequence: AAACTTGATCTAAATTATATAA
Locus tag: Spea_0424
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
yniC
2-deoxyglucose-6-phosphate hydrolase YniC

Position: -283
Score: 4.3
Sequence: TTTCGTGAAGGAACTCACCCTT
Position: -251
Score: 4.1
Sequence: CTATTAGATCAAGATCACAAAT
Locus tag: Spea_0391
Name: prmA
Funciton: ribosomal protein L11 methyltransferase (EC 2.1.1.-)
Locus tag: Spea_0390
Name: nifR3
Funciton: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Locus tag: Spea_0389
Name: fis
Funciton: DNA-binding protein Fis
prmA
ribosomal protein L11 methyltransferase (EC 2.1.1.-)
nifR3
tRNA dihydrouridine synthase B (EC 1.-.-.-)
fis
DNA-binding protein Fis

Position: -217
Score: 3.7
Sequence: TTCAGTGATTTATATCGCCACT
Position: -121
Score: 4.4
Sequence: AAAGGTGAGCTCGATCACAAAC
Locus tag: Spea_3260
Name: Shew_1222
Funciton: hypothetical protein
Shew_1222
hypothetical protein

Position: -181
Score: 4.1
Sequence: TTTTGTGACAGTTATCACGGCA
Locus tag: Spea_4121
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

Position: -148
Score: 4.1
Sequence: GAAAGTGATTTATATCGCGTTT
Locus tag: Spea_1466
Name: null
Funciton: hypothetical protein
hypothetical protein

Position: -222
Score: 4.1
Sequence: TGCCGTGATAACTGTCACAAAA
Locus tag: Spea_4120
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Spea_4119
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Spea_4118
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Spea_4117
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Spea_4116
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Spea_4115
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Spea_4114
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Spea_4113
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
moaA
molybdenum cofactor biosynthesis protein MoaA
moaB
molybdenum cofactor biosynthesis protein MoaB
moaC
molybdenum cofactor biosynthesis protein MoaC
moaD
molybdenum cofactor biosynthesis protein MoaD
moaE
molybdenum cofactor biosynthesis protein MoaE
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
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