Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_3004
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 234
- Operons 106
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -255
Score: 4
Sequence: AAGTATGAATCAGCTCACACTC
Locus tag: Sama_0381
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
Sama_0381
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -234
Score: 4.2
Sequence: AGTCGTGAGTAAAATCACGTTT
Locus tag: Sama_0900
Name: SO3421
Funciton: b-type cytochrome, putative
Sama_0900
SO3421
b-type cytochrome, putative
Position: -207
Score: 3.8
Sequence: TTTTGTGAGTTCCCTCCCAGCT
Locus tag: Sama_0245
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sama_0244
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sama_0243
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sama_0242
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sama_0241
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
Sama_0245
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Sama_0244
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Sama_0243
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Sama_0242
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Sama_0241
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -318
Score: 4.4
Sequence: TAAAGTGATCTTGATCAATATT
Locus tag: Sama_3483
Name: SO4606
Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Sama_3484
Name: SO4607
Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Sama_3485
Name: coxG
Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Sama_3486
Name: SO4609
Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Sama_3483
SO4606
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Sama_3484
SO4607
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Sama_3485
coxG
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Sama_3486
SO4609
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -102
Score: 4.2
Sequence: TGAATTGATTCAGATCACGTTA
Locus tag: Sama_0861
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sama_0861
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -127
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: Sama_2539
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Sama_2538
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Sama_2537
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Sama_2536
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Sama_2535
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Sama_2534
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Sama_2539
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Sama_2538
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Sama_2537
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Sama_2536
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Sama_2535
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Sama_2534
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -95
Score: 3.7
Sequence: AAATATTGCCCCGATCACATAT
Locus tag: Sama_0091
Name: cytcB
Funciton: diheme cytochrome c4
Sama_0091
cytcB
diheme cytochrome c4
Position: -108
Score: 3.8
Sequence: TCATGTGAGCCAGGTTAAAAAA
Locus tag: Sama_0996
Name: SO1247
Funciton: hypothetical protein
Sama_0996
SO1247
hypothetical protein
Position: -99
Score: 4.1
Sequence: AAGTGAGAAATAGCTCACCTAT
Locus tag: Sama_3040
Name: bfd
Funciton: bacterioferritin-associated ferredoxin
Sama_3040
bfd
bacterioferritin-associated ferredoxin
Position: -139
Score: 4
Sequence: ATTTGTGATCACTGTGGCAATT
Locus tag: Sama_2066
Name: SO2637
Funciton: hypothetical protein
Sama_2066
SO2637
hypothetical protein
Position: -192
Score: 4.2
Sequence: ATGTGTGAGCTTTGGCAAATTT
Locus tag: Sama_1068
Name: SO3551
Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Sama_1069
Name: null
Funciton: hypothetical protein
Sama_1068
SO3551
RNA polymerase sigma-70 factor, ECF subfamily
Sama_1069
hypothetical protein
Position: -135
Score: 3.9
Sequence: ATTTGTGATCCGCGTCGAAACG
Locus tag: Sama_0974
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sama_0975
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sama_0976
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
Sama_0974
deoA
thymidine phosphorylase (EC 2.4.2.4)
Sama_0975
deoB
phosphopentomutase (EC 5.4.2.7)
Sama_0976
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -113
Score: 4
Sequence: TTTGATGATCCACTTCAAACTT
Locus tag: Sama_3618
Name: null
Funciton: hypothetical protein
Locus tag: Sama_3617
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sama_3616
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Sama_3615
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sama_3614
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sama_3613
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sama_3612
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sama_3611
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Sama_3618
hypothetical protein
Sama_3617
SO4505
hypothetical protein probably related to Formate dehydrogenase function
Sama_3616
SO4506
iron-sulfur cluster-binding protein
Sama_3615
SO4507
putative formate dehydrogenase-specific chaperone
Sama_3614
SO4508
formate dehydrogenase subunit or accessory protein
Sama_3613
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Sama_3612
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Sama_3611
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -139
Score: 4.3
Sequence: AAAGTTGATTCACATCAAATTA
Locus tag: Sama_0549
Name: Sputcn32_0777
Funciton: hypothetical protein
Sama_0549
Sputcn32_0777
hypothetical protein
Position: -126
Score: 4.5
Sequence: TTCCTTGATCCAGATCACACAT
Locus tag: Sama_1125
Name: null
Funciton: hypothetical protein
Sama_1125
hypothetical protein
Position: -137
Score: 4.6
Sequence: TTTTGTGATGTGGATTAGAAAT
Locus tag: Sama_0142
Name: SO0141
Funciton: sensory box/GGDEF family protein
Sama_0142
SO0141
sensory box/GGDEF family protein
Position: -2
Score: 3.9
Sequence: TTATGTTATTAATGCCACATAC
Locus tag: Sama_1594
Name: ycbW
Funciton: probable membrane protein YcbW
Sama_1594
ycbW
probable membrane protein YcbW
Position: -145
Score: 4.1
Sequence: TTTTCAGATCCGGCTCACACAT
Locus tag: Sama_0165
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Sama_0165
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -126
Score: 4.2
Sequence: AACTGTGATCTGAACCGCAGAA
Locus tag: Sama_2899
Name: Sama_2899
Funciton: transcriptional regulator, LysR family
Sama_2899
Sama_2899
transcriptional regulator, LysR family
Position: -307
Score: 4.1
Sequence: AAATTGAATATGGATCACATTT
Locus tag: Sama_0602
Name: SO3987
Funciton: hypothetical protein
Sama_0602
SO3987
hypothetical protein
Position: -233
Score: 3.9
Sequence: AAATGTGAACAAGATCACAGGC
Locus tag: Sama_1614
Name: rplY
Funciton: LSU ribosomal protein L25p
Sama_1614
rplY
LSU ribosomal protein L25p
Position: -144
Score: 4.2
Sequence: TTATGTGATATTGTTCTGGTTT
Locus tag: Sama_2949
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Sama_2950
Name: SO0861
Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Sama_2949
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Sama_2950
SO0861
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Position: -80
Score: 3.7
Sequence: TTTTGTGACGACTGTCGCCGTG
Locus tag: Sama_1423
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Sama_1424
Name: SO1927.1
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Sama_1425
Name: sdhA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sama_1426
Name: sdhB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Sama_1427
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Sama_1428
Name: sucB
Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Sama_1429
Name: sucC
Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Sama_1430
Name: sucD
Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Sama_1423
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Sama_1424
SO1927.1
Succinate dehydrogenase hydrophobic membrane anchor protein
Sama_1425
sdhA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Sama_1426
sdhB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Sama_1427
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Sama_1428
sucB
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Sama_1429
sucC
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Sama_1430
sucD
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Position: -82
Score: 4.1
Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553
Funciton: putative sulfate permease
Sama_1067
SO3553
putative sulfate permease
Position: -282
Score: 4.4
Sequence: TAATTTGAAGTGAATCATAAAA
Locus tag: Sama_3332
Name: SO0318
Funciton: hypothetical protein
Locus tag: Sama_3331
Name: SO0320
Funciton: conserved domain protein
Locus tag: Sama_3330
Name: SO0321
Funciton: hypothetical protein
Sama_3332
SO0318
hypothetical protein
Sama_3331
SO0320
conserved domain protein
Sama_3330
SO0321
hypothetical protein
Position: -78
Score: 4
Sequence: AAACTTGATCTGGATCACGAGT
Locus tag: Sama_2854
Name: null
Funciton: hypothetical protein
Locus tag: Sama_2853
Name: SO3681
Funciton: universal stress protein family
Sama_2854
hypothetical protein
Sama_2853
SO3681
universal stress protein family
Position: -96
Score: 4.3
Sequence: AACTGTGAGTTGCTTCAGATTT
Locus tag: Sama_1837
Name: gloA
Funciton: lactoylglutathione lyase (EC 4.4.1.5)
Sama_1837
gloA
lactoylglutathione lyase (EC 4.4.1.5)
Position: -324
Score: 3.8
Sequence: TTAATCGATATGGGTCACAGAA
Position: -301
Score: 5.2
Sequence: AAGTGTGATGCACGTCACAAAA
Locus tag: Sama_1838
Name: null
Funciton: TonB-dependent receptor
Sama_1838
TonB-dependent receptor
Position: -151
Score: 4.4
Sequence: AATAGTGATTAAGCTCGCGTTT
Locus tag: Sama_2198
Name: null
Funciton: hypothetical protein
Sama_2198
hypothetical protein
Position: -180
Score: 4
Sequence: CTGAGTGAGCGGCGTCACAATT
Locus tag: Sama_3524
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sama_3525
Name: moaB
Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Sama_3526
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sama_3527
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sama_3528
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sama_3529
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sama_3530
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Sama_3531
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Sama_3524
moaA
molybdenum cofactor biosynthesis protein MoaA
Sama_3525
moaB
molybdenum cofactor biosynthesis protein MoaB
Sama_3526
moaC
molybdenum cofactor biosynthesis protein MoaC
Sama_3527
moaD
molybdenum cofactor biosynthesis protein MoaD
Sama_3528
moaE
molybdenum cofactor biosynthesis protein MoaE
Sama_3529
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Sama_3530
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Sama_3531
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -168
Score: 3.9
Sequence: TTATCTGATAGAGATTTCAATT
Position: -140
Score: 4.5
Sequence: TGTTGTGATTTTTAACACGTTT
Locus tag: Sama_1251
Name: SO1821
Funciton: outer membrane porin, putative
Sama_1251
SO1821
outer membrane porin, putative
Position: -192
Score: 4.2
Sequence: ATGTGTGAGCTTTGGCAAATTT
Locus tag: Sama_1068
Name: null
Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Sama_1069
Name: null
Funciton: hypothetical protein
Locus tag: Sama_1070
Name: SO3412
Funciton: extracellular solute-binding proteins, family 3 protein
Sama_1068
RNA polymerase sigma-70 factor, ECF subfamily
Sama_1069
hypothetical protein
Sama_1070
SO3412
extracellular solute-binding proteins, family 3 protein
Position: -225
Score: 4
Sequence: CAATTTGATGCAGTTCCAATAA
Locus tag: Sama_0246
Name: scyA
Funciton: cytochrome c-type protein
Sama_0246
scyA
cytochrome c-type protein
Position: -262
Score: 4
Sequence: ATTTGTGAGGTAGATCCTCAAA
Locus tag: Sama_0671
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
Sama_0671
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -85
Score: 4
Sequence: AATTGTGAAGCCAGTCACGGTG
Locus tag: Sama_1287
Name: SO2806
Funciton: hypothetical protein
Sama_1287
SO2806
hypothetical protein
Position: -130
Score: 3.9
Sequence: AAATGTGAGGCAGTTGGAATTT
Locus tag: Sama_2882
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Sama_2881
Name: SO3719
Funciton: hypothetical protein
Sama_2882
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Sama_2881
SO3719
hypothetical protein
Position: -138
Score: 4
Sequence: GAGTGTGAGCTGATTCATACTT
Locus tag: Sama_0382
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Sama_0382
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -112
Score: 4
Sequence: GGATGTGTTATTGTTCACACTT
Locus tag: Sama_0647
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Sama_0646
Name: narP
Funciton: Nitrate/nitrite response regulator protein
Sama_0647
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
Sama_0646
narP
Nitrate/nitrite response regulator protein
Position: -92
Score: 4.7
Sequence: ATTCGTGATCCAGTTAACCTTA
Locus tag: Sama_0412
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Sama_0412
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -240
Score: 3.9
Sequence: CATTGTTACTCACTTCATACAT
Position: -126
Score: 3.9
Sequence: ATTTATGACCATACTCACAGAG
Locus tag: Sama_3164
Name: SO0543
Funciton: hypothetical protein
Sama_3164
SO0543
hypothetical protein
Position: -183
Score: 4.7
Sequence: TTATGTGATTTATGTCTCGATT
Locus tag: Sama_2422
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Sama_2422
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Position: -82
Score: 4.1
Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553
Funciton: putative sulfate permease
Locus tag: Sama_1066
Name: null
Funciton: hypothetical protein
Locus tag: Sama_1065
Name: null
Funciton: L-sorbosone dehydrogenase
Locus tag: Sama_1064
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sama_1063
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sama_1062
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
Sama_1067
SO3553
putative sulfate permease
Sama_1066
hypothetical protein
Sama_1065
L-sorbosone dehydrogenase
Sama_1064
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Sama_1063
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Sama_1062
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -210
Score: 3.9
Sequence: AATTTGGAGGAATATCACACAA
Locus tag: Sama_2095
Name: SO2757
Funciton: Histidine permease YuiF
Sama_2095
SO2757
Histidine permease YuiF
Position: -228
Score: 3.8
Sequence: AAGTGTGATGAGTGTCACGCCG
Locus tag: Sama_1214
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Sama_1215
Name: feoB
Funciton: Ferrous iron transport protein B
Sama_1214
feoA
Ferrous iron transport protein A
Sama_1215
feoB
Ferrous iron transport protein B
Position: -319
Score: 3.8
Sequence: AACCATGATGCAGATCGAAATT
Locus tag: Sama_3003
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
Sama_3003
sel1
Sel1 domain protein repeat-containing protein precursor
Position: -82
Score: 4
Sequence: AAATGGGATTAGACTCCCATTA
Locus tag: Sama_1974
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
Sama_1974
cdd
cytidine deaminase (EC 3.5.4.5)
Position: -89
Score: 4.5
Sequence: AATCGAGACATAAATCACATAA
Locus tag: Sama_2423
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Sama_2423
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -165
Score: 3.9
Sequence: TAGAGTGATCCTCTGCAAAGAA
Position: -104
Score: 4.8
Sequence: AATTATGATGCAATTCAAATAA
Locus tag: Sama_3031
Name: null
Funciton: hypothetical protein
Sama_3031
hypothetical protein
Position: -77
Score: 3.8
Sequence: AATTGGGATCCGACCCAAACTT
Locus tag: Sama_2177
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Sama_2177
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Position: -90
Score: 5.4
Sequence: AAATGTGATCTCTATCGCAAAT
Locus tag: Sama_3253
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
Sama_3253
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -89
Score: 4.5
Sequence: CTTAGTGATCCGGATCACTTTT
Locus tag: Sama_0411
Name: SO4134
Funciton: Protein of unknown function DUF465
Sama_0411
SO4134
Protein of unknown function DUF465
Position: -96
Score: 4.1
Sequence: ATATGTGATCGGGGCAATATTT
Locus tag: Sama_0092
Name: engB
Funciton: GTP-binding protein EngB
Sama_0092
engB
GTP-binding protein EngB
Position: -112
Score: 3.9
Sequence: AATTTTTACGTGATTCAGATAA
Position: -107
Score: 4.1
Sequence: TTACGTGATTCAGATAAAGCTT
Position: -87
Score: 4.7
Sequence: TTTTGTGGTGTATTTCGCATTT
Locus tag: Sama_2754
Name: SO0934
Funciton: Putative salt-induced outer membrane protein
Locus tag: Sama_2753
Name: nhaD
Funciton: Na+/H+ antiporter NhaD type
Sama_2754
SO0934
Putative salt-induced outer membrane protein
Sama_2753
nhaD
Na+/H+ antiporter NhaD type
Position: -186
Score: 3.9
Sequence: AAGTTTGAAGTGGATCATCAAA
Locus tag: Sama_3619
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Sama_3620
Name: SO4502
Funciton: conserved domain protein
Sama_3619
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
Sama_3620
SO4502
conserved domain protein
Position: -230
Score: 3.9
Sequence: TTTTTTGATCTGAAACAGCTTT
Position: -178
Score: 3.6
Sequence: TAGCCGGATCCAGTTCACACAT
Locus tag: Sama_1208
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sama_1207
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Sama_1206
Name: mtrB
Funciton: outer membrane protein, MtrB
Sama_1208
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
Sama_1207
mtrA
periplasmic decaheme cytochrome c, MtrA
Sama_1206
mtrB
outer membrane protein, MtrB
Position: -106
Score: 4.4
Sequence: ACTCGTGATCCAGATCAAGTTT
Locus tag: Sama_2855
Name: SO3683
Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: Sama_2856
Name: SO3684
Funciton: transcriptional regulator, TetR family
Sama_2855
SO3683
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Sama_2856
SO3684
transcriptional regulator, TetR family
Position: -96
Score: 3.8
Sequence: AATTTCGATCTGCATCATGGTT
Locus tag: Sama_3004
Name: crp
Funciton: Cyclic AMP receptor protein Crp
Sama_3004
crp
Cyclic AMP receptor protein Crp
Position: -94
Score: 3.6
Sequence: TTTTGTGCGCATCTTCATGCTT
Locus tag: Sama_3326
Name: ygbA
Funciton: nitrosative stress induced protein
Sama_3326
ygbA
nitrosative stress induced protein
Position: -82
Score: 4.1
Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553
Funciton: putative sulfate permease
Locus tag: Sama_1066
Name: null
Funciton: hypothetical protein
Locus tag: Sama_1065
Name: null
Funciton: L-sorbosone dehydrogenase
Locus tag: Sama_1064
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sama_1063
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sama_1062
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
Sama_1067
SO3553
putative sulfate permease
Sama_1066
hypothetical protein
Sama_1065
L-sorbosone dehydrogenase
Sama_1064
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Sama_1063
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Sama_1062
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -112
Score: 5.1
Sequence: TGATGTGATAGTGATCACACTT
Locus tag: Sama_0545
Name: Shewana3_0734
Funciton: outer membrane porin, putative
Sama_0545
Shewana3_0734
outer membrane porin, putative
Position: -115
Score: 4.3
Sequence: TTGTGTGATATTCCTCCAAATT
Locus tag: Sama_2094
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Sama_2094
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein
Position: -172
Score: 3.4
Sequence: AAGCATGACACACCTCATGTTA
Locus tag: Sama_1679
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sama_1676
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sama_1675
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sama_1674
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
Sama_1679
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Sama_1678
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Sama_1677
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
Sama_1676
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
Sama_1675
hyaE
NiFe hydrogenase assembly chaperone, HyaE
Sama_1674
hyaF
NiFe hydrogenase assembly protein, HypF
Position: -135
Score: 4.7
Sequence: ATATGTGATCTGGGTATCAATT
Locus tag: Sama_1570
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
Sama_1570
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -137
Score: 4.2
Sequence: TTTTTTGATCCAGCGCAAATTC
Position: -118
Score: 4.2
Sequence: TTCTGTGAATCCCCTAACAAAT
Locus tag: Sama_2679
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Sama_2678
Name: cydC
Funciton: Transport ATP-binding protein CydC
Sama_2679
cydD
Transport ATP-binding protein CydD
Sama_2678
cydC
Transport ATP-binding protein CydC
Position: -144
Score: 4.1
Sequence: GTTTGTGATCCGCTTCCAATAA
Locus tag: Sama_3222
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3221
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3220
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sama_3219
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Sama_3222
frdC1
Fumarate reductase cytochrome b subunit
Sama_3221
fdrC2
Fumarate reductase cytochrome b subunit
Sama_3220
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Sama_3219
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -180
Score: 4.3
Sequence: TTTTTTGACACAGCTCAAGTAT
Locus tag: Sama_1791
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Sama_1792
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Sama_1793
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Sama_1794
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
Sama_1791
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
Sama_1792
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
Sama_1793
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Sama_1794
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -278
Score: 3.9
Sequence: CTATGTTAGCTGTGTCGCAAAT
Locus tag: Sama_1499
Name: Spea_1673
Funciton: hypothetical protein
Sama_1499
Spea_1673
hypothetical protein
Position: -56
Score: 4
Sequence: AATTGTTACGGACGTAACAGAA
Locus tag: Sama_1371
Name: ompW
Funciton: outer membrane protein W precursor
Sama_1371
ompW
outer membrane protein W precursor
Position: -51
Score: 4.3
Sequence: TTTTGTGAGCTGCATCACGGCA
Locus tag: Sama_1307
Name: null
Funciton: hypothetical protein
Sama_1307
hypothetical protein
Position: -111
Score: 5
Sequence: AATTGTGATTTGAGTCACGCTA
Locus tag: Sama_2219
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Sama_2218
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sama_2219
fahA
Fumarylacetoacetate hydrolase family protein
Sama_2218
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -78
Score: 4.3
Sequence: AAACGTGATTTTACTCACGACT
Locus tag: Sama_0899
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
Sama_0899
yfiA-2
Ribosome hibernation protein YfiA
Position: -108
Score: 3.8
Sequence: TTTGTTGATCTGGATCATTAAT
Locus tag: Sama_0589
Name: Sfri_4035
Funciton: Conserved hypothetical signal peptide protein
Locus tag: Sama_0588
Name: Sfri_4034
Funciton: FMN-binding domain-containing protein
Locus tag: Sama_0587
Name: Sfri_4033
Funciton: PepSY-associated TM helix domain-containing protein
Sama_0589
Sfri_4035
Conserved hypothetical signal peptide protein
Sama_0588
Sfri_4034
FMN-binding domain-containing protein
Sama_0587
Sfri_4033
PepSY-associated TM helix domain-containing protein
Position: -76
Score: 4.6
Sequence: AAACGTGAGGCAGTTAACAAAA
Locus tag: Sama_2222
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sama_2221
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sama_2222
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sama_2221
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -194
Score: 4
Sequence: TATTGTGAAATCACGCAGAAAA
Locus tag: Sama_0395
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Sama_0394
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Sama_0395
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Sama_0394
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -197
Score: 4
Sequence: TAATGGTATTAATATCAAATAT
Position: -40
Score: 3.7
Sequence: AGTCGTTATACTGGCCACAAAA
Locus tag: Sama_3096
Name: null
Funciton: Outer membrane lipoprotein omp16 precursor
Locus tag: Sama_3095
Name: SO3967
Funciton: Molybdenum-binding periplasmic protein
Sama_3096
Outer membrane lipoprotein omp16 precursor
Sama_3095
SO3967
Molybdenum-binding periplasmic protein
Position: -87
Score: 4.2
Sequence: CTGCTTGATGAGGATCACAATT
Locus tag: Sama_2599
Name: Sama_2599
Funciton: putative lipoprotein
Sama_2599
Sama_2599
putative lipoprotein
Position: -38
Score: 4.5
Sequence: AAACTTGAGCCGCTTCACAAAT
Locus tag: Sama_3143
Name: Spea_3717
Funciton: hypothetical protein
Locus tag: Sama_3142
Name: omp_Zn
Funciton: zinc-regulated TonB-dependent outer membrane receptor
Locus tag: Sama_3141
Name: znuA
Funciton: zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: Sama_3140
Name: znuB
Funciton: zinc ABC transporter, inner membrane permease protein ZnuB
Sama_3143
Spea_3717
hypothetical protein
Sama_3142
omp_Zn
zinc-regulated TonB-dependent outer membrane receptor
Sama_3141
znuA
zinc ABC transporter, periplasmic-binding protein ZnuA
Sama_3140
znuB
zinc ABC transporter, inner membrane permease protein ZnuB
Position: -195
Score: 3.9
Sequence: ATAAGCGATCCTGATCACAAGT
Locus tag: Sama_1869
Name: SO2535
Funciton: Predicted glutamine amidotransferase
Sama_1869
SO2535
Predicted glutamine amidotransferase
Position: -78
Score: 4.5
Sequence: AATTGATACCCAGATCACATAT
Locus tag: Sama_1569
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Sama_1569
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -128
Score: 4.7
Sequence: TAATTTGATGTGAATCAACTTT
Locus tag: Sama_0550
Name: SO3890
Funciton: methyl-accepting chemotaxis protein
Sama_0550
SO3890
methyl-accepting chemotaxis protein
Position: -240
Score: 4.1
Sequence: ACTCGTGATCAAGCTCACGGTT
Position: -99
Score: 4.1
Sequence: AATTTGGATGTGGGGCACATTT
Locus tag: Sama_0915
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Sama_0915
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -173
Score: 4.2
Sequence: ATCTGTGATGTGAATCATTCTT
Locus tag: Sama_1919
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
Sama_1919
ydhD
Probable monothiol glutaredoxin ydhD
Position: -285
Score: 4.1
Sequence: AAAAGAGACTTAGATCATATTT
Locus tag: Sama_2901
Name: null
Funciton: hypothetical protein
Locus tag: Sama_2902
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sama_2903
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sama_2904
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Sama_2901
hypothetical protein
Sama_2902
nrfB
Cytochrome c-type protein NrfB precursor
Sama_2903
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Sama_2904
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD
Position: -193
Score: 3.8
Sequence: TGCTGTGCAGTGTATCACAAAG
Locus tag: Sama_0032
Name: fadB
Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Sama_0031
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Sama_0032
fadB
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Sama_0031
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -189
Score: 3.9
Sequence: CGGCGTGACACTCATCACACTT
Locus tag: Sama_1213
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Sama_1212
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Sama_1211
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Sama_1210
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
Sama_1213
mtrD
periplasmic decaheme cytochrome c, MtrD
Sama_1212
mtrE
outer membrane protein, MtrE
Sama_1211
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
Sama_1210
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -144
Score: 4.2
Sequence: ACTTGTGATGTAGCCCAAAGAT
Locus tag: Sama_1688
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Sama_1688
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -297
Score: 3.9
Sequence: AATTGTGATATTGAACAATATG
Locus tag: Sama_2750
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Sama_2751
Name: null
Funciton: hypothetical protein
Sama_2750
SO0939
split-soret diheme cytochrome c
Sama_2751
hypothetical protein
Position: -142
Score: 4
Sequence: AACTGGTATTTCGATCACAATT
Locus tag: Sama_3011
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sama_3010
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sama_3009
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sama_3008
Name: SO0620
Funciton: FIG008480: hypothetical protein
Sama_3011
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Sama_3010
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Sama_3009
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Sama_3008
SO0620
FIG008480: hypothetical protein
Position: -89
Score: 5.1
Sequence: ATTTGCGATAGAGATCACATTT
Locus tag: Sama_3254
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Sama_3255
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Sama_3256
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Sama_3257
Name: hemY
Funciton: HemY domain-containing protein
Sama_3254
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
Sama_3255
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
Sama_3256
hemX
Homolog of E. coli HemX protein
Sama_3257
hemY
HemY domain-containing protein
Position: -113
Score: 3.6
Sequence: TAAGATGATCTGCTTCAAGGAA
Locus tag: Sama_0895
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Sama_0896
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Sama_0895
hcp
Hydroxylamine reductase (EC 1.7.-.-)
Sama_0896
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Position: -140
Score: 4.8
Sequence: TTATGTGATGATTGTCAAAAAT
Locus tag: Sama_1934
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Sama_1934
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -268
Score: 3.9
Sequence: AAACGTCACATAGATCACACAC
Locus tag: Sama_3178
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: Sama_3179
Name: SO4143
Funciton: hypothetical protein
Locus tag: Sama_3180
Name: SO4144
Funciton: octaheme tetrathionate reductase
Sama_3178
SO4142
cytochrome c family protein
Sama_3179
SO4143
hypothetical protein
Sama_3180
SO4144
octaheme tetrathionate reductase
Position: -109
Score: 4
Sequence: CTTTGTGATACACTGCACAGCA
Locus tag: Sama_0033
Name: pepQ
Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Sama_0034
Name: SO0023
Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Sama_0035
Name: trkH-1
Funciton: potassium uptake protein TrkH
Locus tag: Sama_0036
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Sama_0033
pepQ
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Sama_0034
SO0023
FIG000605: protein co-occurring with transport systems (COG1739)
Sama_0035
trkH-1
potassium uptake protein TrkH
Sama_0036
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Position: -214
Score: 4.8
Sequence: AAGTGTGATCACTATCACATCA
Locus tag: Sama_0546
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
Sama_0546
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL
Position: -112
Score: 3.6
Sequence: AAGTTAGAATCGGGTCACACTT
Locus tag: Sama_2168
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Sama_2167
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Sama_2168
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Sama_2167
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -88
Score: 4.4
Sequence: TATAGTGAGTTCAATCACAATC
Locus tag: Sama_3282
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Sama_3282
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -138
Score: 3.9
Sequence: TATTGTTACTGGCAGCAAACAA
Locus tag: Sama_0922
Name: mviN
Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: Sama_0923
Name: ribF
Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: Sama_0924
Name: ileS
Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: Sama_0925
Name: lspA
Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: Sama_0926
Name: fkbP-2
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: Sama_0927
Name: lytB
Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: Sama_0928
Name: pilV
Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: Sama_0929
Name: pilW
Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: Sama_0930
Name: pilX
Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: Sama_0931
Name: pilY1
Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: Sama_0932
Name: pilE
Funciton: type IV pilus biogenesis protein PilE
Sama_0922
mviN
proposed peptidoglycan lipid II flippase MurJ
Sama_0923
ribF
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Sama_0924
ileS
isoleucyl-tRNA synthetase (EC 6.1.1.5)
Sama_0925
lspA
lipoprotein signal peptidase (EC 3.4.23.36)
Sama_0926
fkbP-2
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Sama_0927
lytB
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Sama_0928
pilV
type IV fimbrial biogenesis protein PilV
Sama_0929
pilW
type IV fimbrial biogenesis protein PilW
Sama_0930
pilX
type IV fimbrial biogenesis protein PilX
Sama_0931
pilY1
type IV fimbrial biogenesis protein PilY1
Sama_0932
pilE
type IV pilus biogenesis protein PilE
Position: -67
Score: 4.1
Sequence: AACCGCGACCGCCATCACATTT
Locus tag: Sama_1375
Name: atoB
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sama_1376
Name: mmsA
Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sama_1377
Name: SO1679
Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sama_1378
Name: SO1680
Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sama_1379
Name: SO1681
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sama_1380
Name: mmsB
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sama_1381
Name: fabG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sama_1375
atoB
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sama_1376
mmsA
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sama_1377
SO1679
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sama_1378
SO1680
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sama_1379
SO1681
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sama_1380
mmsB
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sama_1381
fabG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -46
Score: 3.8
Sequence: TTTGAGGATCTACCTCACAAAT
Locus tag: Sama_0672
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
Sama_0672
mdh
malate dehydrogenase (EC 1.1.1.37)
Position: -91
Score: 4.2
Sequence: AAGAATGATTCACATCACAGAT
Locus tag: Sama_1920
Name: sodB
Funciton: superoxide dismutase [Fe] (EC 1.15.1.1)
Sama_1920
sodB
superoxide dismutase [Fe] (EC 1.15.1.1)
Position: -64
Score: 4.3
Sequence: ACTTGTGATCAGGATCGCTTAT
Locus tag: Sama_1870
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Sama_1870
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -171
Score: 3.9
Sequence: AAATATGCGCTGCTTAACAAAA
Locus tag: Sama_3604
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
Sama_3604
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -137
Score: 4.2
Sequence: AAGTGTGACCCGATTCTAACTT
Locus tag: Sama_2169
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Sama_2170
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Sama_2171
Name: null
Funciton: hypothetical protein
Locus tag: Sama_2172
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Sama_2173
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Sama_2174
Name: SO3095
Funciton: hypothetical protein
Sama_2169
SO3090
MoxR-like ATPase in aerotolerance operon
Sama_2170
SO3091
Conserved hypothetical protein
Sama_2171
hypothetical protein
Sama_2172
SO3093
von Willebrand factor type A domain protein
Sama_2173
SO3094
TPR domain protein in aerotolerance operon
Sama_2174
SO3095
hypothetical protein
Position: -226
Score: 4.7
Sequence: TTGTGTGATCTTGCGCACGTTA
Locus tag: Sama_2091
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
Sama_2091
SO2753
prolyl endopeptidase (EC 3.4.21.26)
Position: -157
Score: 4.3
Sequence: AATTGTGACGCCGCTCACTCAG
Locus tag: Sama_3523
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Sama_3523
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -304
Score: 4.5
Sequence: TTTTGTTAACTGCCTCACGTTT
Locus tag: Sama_2223
Name: null
Funciton: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Locus tag: Sama_2224
Name: null
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: Sama_2225
Name: null
Funciton: ferredoxin-type protein NapF
Locus tag: Sama_2226
Name: null
Funciton: Protein of unknown function DUF583
Locus tag: Sama_2227
Name: null
Funciton: Transcriptional regulator, LysR family
Locus tag: Sama_2228
Name: mtrF
Funciton: decaheme cytochrome c MtrF
Sama_2223
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Sama_2224
UDP-glucose 4-epimerase (EC 5.1.3.2)
Sama_2225
ferredoxin-type protein NapF
Sama_2226
Protein of unknown function DUF583
Sama_2227
Transcriptional regulator, LysR family
Sama_2228
mtrF
decaheme cytochrome c MtrF
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