Regulon of Crp in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_3004 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 234 |
| - Operons | 106 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -255
Score: 4 Sequence: AAGTATGAATCAGCTCACACTC
Locus tag: Sama_0381
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
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2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -234
Score: 4.2 Sequence: AGTCGTGAGTAAAATCACGTTT
Locus tag: Sama_0900
Name: SO3421 Funciton: b-type cytochrome, putative |
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SO3421
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b-type cytochrome, putative
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Position: -207
Score: 3.8 Sequence: TTTTGTGAGTTCCCTCCCAGCT
Locus tag: Sama_0245
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Sama_0244
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Sama_0243
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Sama_0242
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Sama_0241
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
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ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
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ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
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ccmD
|
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
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ccmE
|
cytochrome c-type biogenesis protein CcmE, heme chaperone
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Position: -318
Score: 4.4 Sequence: TAAAGTGATCTTGATCAATATT
Locus tag: Sama_3483
Name: SO4606 Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Sama_3484
Name: SO4607 Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Sama_3485
Name: coxG Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Sama_3486
Name: SO4609 Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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SO4606
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cytochrome c oxidase polypeptide II (EC 1.9.3.1)
|
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SO4607
|
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
|
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coxG
|
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
|
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SO4609
|
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
|
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Position: -102
Score: 4.2 Sequence: TGAATTGATTCAGATCACGTTA
Locus tag: Sama_0861
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
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cyaC
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Adenylate cyclase (EC 4.6.1.1)
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Position: -127
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: Sama_2539
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Sama_2538
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Sama_2537
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Sama_2536
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Sama_2535
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Sama_2534
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
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nqrA-2
|
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
|
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nqrB-2
|
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
|
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nqrC-2
|
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
|
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nqrD-1
|
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
|
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nqrE-2
|
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
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nqrF-2
|
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
|
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Position: -95
Score: 3.7 Sequence: AAATATTGCCCCGATCACATAT
Locus tag: Sama_0091
Name: cytcB Funciton: diheme cytochrome c4 |
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cytcB
|
diheme cytochrome c4
|
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Position: -108
Score: 3.8 Sequence: TCATGTGAGCCAGGTTAAAAAA
Locus tag: Sama_0996
Name: SO1247 Funciton: hypothetical protein |
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SO1247
|
hypothetical protein
|
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Position: -99
Score: 4.1 Sequence: AAGTGAGAAATAGCTCACCTAT
Locus tag: Sama_3040
Name: bfd Funciton: bacterioferritin-associated ferredoxin |
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bfd
|
bacterioferritin-associated ferredoxin
|
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Position: -139
Score: 4 Sequence: ATTTGTGATCACTGTGGCAATT
Locus tag: Sama_2066
Name: SO2637 Funciton: hypothetical protein |
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SO2637
|
hypothetical protein
|
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Position: -192
Score: 4.2 Sequence: ATGTGTGAGCTTTGGCAAATTT
Locus tag: Sama_1068
Name: SO3551 Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Sama_1069
Name: null Funciton: hypothetical protein |
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SO3551
|
RNA polymerase sigma-70 factor, ECF subfamily
|
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hypothetical protein
|
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Position: -135
Score: 3.9 Sequence: ATTTGTGATCCGCGTCGAAACG
Locus tag: Sama_0974
Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Sama_0975
Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Sama_0976
Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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thymidine phosphorylase (EC 2.4.2.4)
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deoB
|
phosphopentomutase (EC 5.4.2.7)
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deoD-2
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purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -113
Score: 4 Sequence: TTTGATGATCCACTTCAAACTT
Locus tag: Sama_3618
Name: null Funciton: hypothetical protein
Locus tag: Sama_3617
Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Sama_3616
Name: SO4506 Funciton: iron-sulfur cluster-binding protein
Locus tag: Sama_3615
Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Sama_3614
Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Sama_3613
Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Sama_3612
Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Sama_3611
Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) |
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hypothetical protein
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SO4505
|
hypothetical protein probably related to Formate dehydrogenase function
|
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SO4506
|
iron-sulfur cluster-binding protein
|
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SO4507
|
putative formate dehydrogenase-specific chaperone
|
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SO4508
|
formate dehydrogenase subunit or accessory protein
|
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SO4509
|
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
|
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fdhB-1
|
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
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SO4511
|
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
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Position: -139
Score: 4.3 Sequence: AAAGTTGATTCACATCAAATTA
Locus tag: Sama_0549
Name: Sputcn32_0777 Funciton: hypothetical protein |
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Sputcn32_0777
|
hypothetical protein
|
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Position: -126
Score: 4.5 Sequence: TTCCTTGATCCAGATCACACAT
Locus tag: Sama_1125
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -137
Score: 4.6 Sequence: TTTTGTGATGTGGATTAGAAAT
Locus tag: Sama_0142
Name: SO0141 Funciton: sensory box/GGDEF family protein |
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SO0141
|
sensory box/GGDEF family protein
|
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Position: -2
Score: 3.9 Sequence: TTATGTTATTAATGCCACATAC
Locus tag: Sama_1594
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
|
probable membrane protein YcbW
|
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Position: -145
Score: 4.1 Sequence: TTTTCAGATCCGGCTCACACAT
Locus tag: Sama_0165
Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
|
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
|
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Position: -126
Score: 4.2 Sequence: AACTGTGATCTGAACCGCAGAA
Locus tag: Sama_2899
Name: Sama_2899 Funciton: transcriptional regulator, LysR family |
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Sama_2899
|
transcriptional regulator, LysR family
|
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Position: -307
Score: 4.1 Sequence: AAATTGAATATGGATCACATTT
Locus tag: Sama_0602
Name: SO3987 Funciton: hypothetical protein |
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SO3987
|
hypothetical protein
|
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Position: -233
Score: 3.9 Sequence: AAATGTGAACAAGATCACAGGC
Locus tag: Sama_1614
Name: rplY Funciton: LSU ribosomal protein L25p |
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rplY
|
LSU ribosomal protein L25p
|
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Position: -144
Score: 4.2 Sequence: TTATGTGATATTGTTCTGGTTT
Locus tag: Sama_2949
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Sama_2950
Name: SO0861 Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress |
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serA
|
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
|
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SO0861
|
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
|
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Position: -80
Score: 3.7 Sequence: TTTTGTGACGACTGTCGCCGTG
Locus tag: Sama_1423
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Sama_1424
Name: SO1927.1 Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Sama_1425
Name: sdhA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sama_1426
Name: sdhB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: Sama_1427
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: Sama_1428
Name: sucB Funciton: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Locus tag: Sama_1429
Name: sucC Funciton: succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Sama_1430
Name: sucD Funciton: succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
|
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SO1927.1
|
Succinate dehydrogenase hydrophobic membrane anchor protein
|
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sdhA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
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sdhB
|
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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sucA
|
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
|
dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
|
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sucC
|
succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
|
succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
|
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Position: -82
Score: 4.1 Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553 Funciton: putative sulfate permease |
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SO3553
|
putative sulfate permease
|
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Position: -282
Score: 4.4 Sequence: TAATTTGAAGTGAATCATAAAA
Locus tag: Sama_3332
Name: SO0318 Funciton: hypothetical protein
Locus tag: Sama_3331
Name: SO0320 Funciton: conserved domain protein
Locus tag: Sama_3330
Name: SO0321 Funciton: hypothetical protein |
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SO0318
|
hypothetical protein
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SO0320
|
conserved domain protein
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SO0321
|
hypothetical protein
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Position: -78
Score: 4 Sequence: AAACTTGATCTGGATCACGAGT
Locus tag: Sama_2854
Name: null Funciton: hypothetical protein
Locus tag: Sama_2853
Name: SO3681 Funciton: universal stress protein family |
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hypothetical protein
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SO3681
|
universal stress protein family
|
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Position: -96
Score: 4.3 Sequence: AACTGTGAGTTGCTTCAGATTT
Locus tag: Sama_1837
Name: gloA Funciton: lactoylglutathione lyase (EC 4.4.1.5) |
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gloA
|
lactoylglutathione lyase (EC 4.4.1.5)
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Position: -324
Score: 3.8 Sequence: TTAATCGATATGGGTCACAGAA
Position: -301
Score: 5.2 Sequence: AAGTGTGATGCACGTCACAAAA
Locus tag: Sama_1838
Name: null Funciton: TonB-dependent receptor |
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TonB-dependent receptor
|
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Position: -151
Score: 4.4 Sequence: AATAGTGATTAAGCTCGCGTTT
Locus tag: Sama_2198
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -180
Score: 4 Sequence: CTGAGTGAGCGGCGTCACAATT
Locus tag: Sama_3524
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Sama_3525
Name: moaB Funciton: molybdenum cofactor biosynthesis protein MoaB
Locus tag: Sama_3526
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Sama_3527
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Sama_3528
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Sama_3529
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Sama_3530
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Sama_3531
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
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moaA
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molybdenum cofactor biosynthesis protein MoaA
|
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moaB
|
molybdenum cofactor biosynthesis protein MoaB
|
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moaC
|
molybdenum cofactor biosynthesis protein MoaC
|
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moaD
|
molybdenum cofactor biosynthesis protein MoaD
|
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moaE
|
molybdenum cofactor biosynthesis protein MoaE
|
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modA
|
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
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modB
|
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
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modC
|
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
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Position: -168
Score: 3.9 Sequence: TTATCTGATAGAGATTTCAATT
Position: -140
Score: 4.5 Sequence: TGTTGTGATTTTTAACACGTTT
Locus tag: Sama_1251
Name: SO1821 Funciton: outer membrane porin, putative |
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SO1821
|
outer membrane porin, putative
|
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Position: -192
Score: 4.2 Sequence: ATGTGTGAGCTTTGGCAAATTT
Locus tag: Sama_1068
Name: null Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Sama_1069
Name: null Funciton: hypothetical protein
Locus tag: Sama_1070
Name: SO3412 Funciton: extracellular solute-binding proteins, family 3 protein |
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RNA polymerase sigma-70 factor, ECF subfamily
|
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hypothetical protein
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SO3412
|
extracellular solute-binding proteins, family 3 protein
|
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Position: -225
Score: 4 Sequence: CAATTTGATGCAGTTCCAATAA
Locus tag: Sama_0246
Name: scyA Funciton: cytochrome c-type protein |
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scyA
|
cytochrome c-type protein
|
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Position: -262
Score: 4 Sequence: ATTTGTGAGGTAGATCCTCAAA
Locus tag: Sama_0671
Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon |
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argR
|
arginine pathway regulatory protein ArgR, repressor of arg regulon
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Position: -85
Score: 4 Sequence: AATTGTGAAGCCAGTCACGGTG
Locus tag: Sama_1287
Name: SO2806 Funciton: hypothetical protein |
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SO2806
|
hypothetical protein
|
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Position: -130
Score: 3.9 Sequence: AAATGTGAGGCAGTTGGAATTT
Locus tag: Sama_2882
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Sama_2881
Name: SO3719 Funciton: hypothetical protein |
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hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
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SO3719
|
hypothetical protein
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Position: -138
Score: 4 Sequence: GAGTGTGAGCTGATTCATACTT
Locus tag: Sama_0382
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
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acnB
|
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
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Position: -112
Score: 4 Sequence: GGATGTGTTATTGTTCACACTT
Locus tag: Sama_0647
Name: narQ Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Sama_0646
Name: narP Funciton: Nitrate/nitrite response regulator protein |
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narQ
|
Nitrate/nitrite sensor protein (EC 2.7.3.-)
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narP
|
Nitrate/nitrite response regulator protein
|
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Position: -92
Score: 4.7 Sequence: ATTCGTGATCCAGTTAACCTTA
Locus tag: Sama_0412
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
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udp
|
Uridine phosphorylase (EC 2.4.2.3)
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Position: -240
Score: 3.9 Sequence: CATTGTTACTCACTTCATACAT
Position: -126
Score: 3.9 Sequence: ATTTATGACCATACTCACAGAG
Locus tag: Sama_3164
Name: SO0543 Funciton: hypothetical protein |
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SO0543
|
hypothetical protein
|
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Position: -183
Score: 4.7 Sequence: TTATGTGATTTATGTCTCGATT
Locus tag: Sama_2422
Name: SO1539 Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1) |
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SO1539
|
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
|
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Position: -82
Score: 4.1 Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553 Funciton: putative sulfate permease
Locus tag: Sama_1066
Name: null Funciton: hypothetical protein
Locus tag: Sama_1065
Name: null Funciton: L-sorbosone dehydrogenase
Locus tag: Sama_1064
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sama_1063
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sama_1062
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
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SO3553
|
putative sulfate permease
|
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|
hypothetical protein
|
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L-sorbosone dehydrogenase
|
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purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
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purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
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SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
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|
Position: -210
Score: 3.9 Sequence: AATTTGGAGGAATATCACACAA
Locus tag: Sama_2095
Name: SO2757 Funciton: Histidine permease YuiF |
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SO2757
|
Histidine permease YuiF
|
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Position: -228
Score: 3.8 Sequence: AAGTGTGATGAGTGTCACGCCG
Locus tag: Sama_1214
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: Sama_1215
Name: feoB Funciton: Ferrous iron transport protein B |
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feoA
|
Ferrous iron transport protein A
|
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feoB
|
Ferrous iron transport protein B
|
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|
Position: -319
Score: 3.8 Sequence: AACCATGATGCAGATCGAAATT
Locus tag: Sama_3003
Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor |
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sel1
|
Sel1 domain protein repeat-containing protein precursor
|
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|
Position: -82
Score: 4 Sequence: AAATGGGATTAGACTCCCATTA
Locus tag: Sama_1974
Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5) |
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cdd
|
cytidine deaminase (EC 3.5.4.5)
|
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Position: -89
Score: 4.5 Sequence: AATCGAGACATAAATCACATAA
Locus tag: Sama_2423
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
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|
icd
|
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
|
||
|
Position: -165
Score: 3.9 Sequence: TAGAGTGATCCTCTGCAAAGAA
Position: -104
Score: 4.8 Sequence: AATTATGATGCAATTCAAATAA
Locus tag: Sama_3031
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -77
Score: 3.8 Sequence: AATTGGGATCCGACCCAAACTT
Locus tag: Sama_2177
Name: putP Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter |
|||
|
putP
|
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
|
||
|
Position: -90
Score: 5.4 Sequence: AAATGTGATCTCTATCGCAAAT
Locus tag: Sama_3253
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -89
Score: 4.5 Sequence: CTTAGTGATCCGGATCACTTTT
Locus tag: Sama_0411
Name: SO4134 Funciton: Protein of unknown function DUF465 |
|||
|
SO4134
|
Protein of unknown function DUF465
|
||
|
Position: -96
Score: 4.1 Sequence: ATATGTGATCGGGGCAATATTT
Locus tag: Sama_0092
Name: engB Funciton: GTP-binding protein EngB |
|||
|
engB
|
GTP-binding protein EngB
|
||
|
Position: -112
Score: 3.9 Sequence: AATTTTTACGTGATTCAGATAA
Position: -107
Score: 4.1 Sequence: TTACGTGATTCAGATAAAGCTT
Position: -87
Score: 4.7 Sequence: TTTTGTGGTGTATTTCGCATTT
Locus tag: Sama_2754
Name: SO0934 Funciton: Putative salt-induced outer membrane protein
Locus tag: Sama_2753
Name: nhaD Funciton: Na+/H+ antiporter NhaD type |
|||
|
SO0934
|
Putative salt-induced outer membrane protein
|
||
|
nhaD
|
Na+/H+ antiporter NhaD type
|
||
|
Position: -186
Score: 3.9 Sequence: AAGTTTGAAGTGGATCATCAAA
Locus tag: Sama_3619
Name: SO4503 Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Sama_3620
Name: SO4502 Funciton: conserved domain protein |
|||
|
SO4503
|
formate dehydrogenase chain D (EC 1.2.1.2)
|
||
|
SO4502
|
conserved domain protein
|
||
|
Position: -230
Score: 3.9 Sequence: TTTTTTGATCTGAAACAGCTTT
Position: -178
Score: 3.6 Sequence: TAGCCGGATCCAGTTCACACAT
Locus tag: Sama_1208
Name: mtrC Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Sama_1207
Name: mtrA Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Sama_1206
Name: mtrB Funciton: outer membrane protein, MtrB |
|||
|
mtrC
|
surface localized decaheme cytochrome c lipoprotein, MtrC
|
||
|
mtrA
|
periplasmic decaheme cytochrome c, MtrA
|
||
|
mtrB
|
outer membrane protein, MtrB
|
||
|
Position: -106
Score: 4.4 Sequence: ACTCGTGATCCAGATCAAGTTT
Locus tag: Sama_2855
Name: SO3683 Funciton: aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
Locus tag: Sama_2856
Name: SO3684 Funciton: transcriptional regulator, TetR family |
|||
|
SO3683
|
aldehyde dehydrogenase (EC 1.2.1.3); probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)
|
||
|
SO3684
|
transcriptional regulator, TetR family
|
||
|
Position: -96
Score: 3.8 Sequence: AATTTCGATCTGCATCATGGTT
Locus tag: Sama_3004
Name: crp Funciton: Cyclic AMP receptor protein Crp |
|||
|
crp
|
Cyclic AMP receptor protein Crp
|
||
|
Position: -94
Score: 3.6 Sequence: TTTTGTGCGCATCTTCATGCTT
Locus tag: Sama_3326
Name: ygbA Funciton: nitrosative stress induced protein |
|||
|
ygbA
|
nitrosative stress induced protein
|
||
|
Position: -82
Score: 4.1 Sequence: AAATTTGCCAAAGCTCACACAT
Locus tag: Sama_1067
Name: SO3553 Funciton: putative sulfate permease
Locus tag: Sama_1066
Name: null Funciton: hypothetical protein
Locus tag: Sama_1065
Name: null Funciton: L-sorbosone dehydrogenase
Locus tag: Sama_1064
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Sama_1063
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Sama_1062
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
|||
|
SO3553
|
putative sulfate permease
|
||
|
hypothetical protein
|
|||
|
L-sorbosone dehydrogenase
|
|||
|
purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
||
|
purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
||
|
SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
||
|
Position: -112
Score: 5.1 Sequence: TGATGTGATAGTGATCACACTT
Locus tag: Sama_0545
Name: Shewana3_0734 Funciton: outer membrane porin, putative |
|||
|
Shewana3_0734
|
outer membrane porin, putative
|
||
|
Position: -115
Score: 4.3 Sequence: TTGTGTGATATTCCTCCAAATT
Locus tag: Sama_2094
Name: Swoo_2741 Funciton: Alkyl hydroperoxide reductase subunit C-like protein |
|||
|
Swoo_2741
|
Alkyl hydroperoxide reductase subunit C-like protein
|
||
|
Position: -172
Score: 3.4 Sequence: AAGCATGACACACCTCATGTTA
Locus tag: Sama_1679
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Sama_1678
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Sama_1677
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Sama_1676
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Sama_1675
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Sama_1674
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
|||
|
hyaA
|
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
|
||
|
hyaB
|
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
|
||
|
hydC
|
Ni,Fe-hydrogenase I cytochrome b subunit
|
||
|
hyaD
|
Hydrogenase maturation protease (EC 3.4.24.-)
|
||
|
hyaE
|
NiFe hydrogenase assembly chaperone, HyaE
|
||
|
hyaF
|
NiFe hydrogenase assembly protein, HypF
|
||
|
Position: -135
Score: 4.7 Sequence: ATATGTGATCTGGGTATCAATT
Locus tag: Sama_1570
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
|||
|
hmgR
|
Tyrosine degradation transcriptional regulator, LysR family
|
||
|
Position: -137
Score: 4.2 Sequence: TTTTTTGATCCAGCGCAAATTC
Position: -118
Score: 4.2 Sequence: TTCTGTGAATCCCCTAACAAAT
Locus tag: Sama_2679
Name: cydD Funciton: Transport ATP-binding protein CydD
Locus tag: Sama_2678
Name: cydC Funciton: Transport ATP-binding protein CydC |
|||
|
cydD
|
Transport ATP-binding protein CydD
|
||
|
cydC
|
Transport ATP-binding protein CydC
|
||
|
Position: -144
Score: 4.1 Sequence: GTTTGTGATCCGCTTCCAATAA
Locus tag: Sama_3222
Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3221
Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Sama_3220
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Sama_3219
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
frdC1
|
Fumarate reductase cytochrome b subunit
|
||
|
fdrC2
|
Fumarate reductase cytochrome b subunit
|
||
|
frdA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -180
Score: 4.3 Sequence: TTTTTTGACACAGCTCAAGTAT
Locus tag: Sama_1791
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Sama_1792
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Sama_1793
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Sama_1794
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
|||
|
ccoN
|
Cbb3-type cytochrome c oxidase, subunit I, CcoN
|
||
|
ccoO
|
Cbb3-type cytochrome c oxidase, subunit II, CcoO
|
||
|
ccoQ
|
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
|
||
|
ccoP
|
Cbb3-type cytochrome c oxidase, subunit III, CcoP
|
||
|
Position: -278
Score: 3.9 Sequence: CTATGTTAGCTGTGTCGCAAAT
Locus tag: Sama_1499
Name: Spea_1673 Funciton: hypothetical protein |
|||
|
Spea_1673
|
hypothetical protein
|
||
|
Position: -56
Score: 4 Sequence: AATTGTTACGGACGTAACAGAA
Locus tag: Sama_1371
Name: ompW Funciton: outer membrane protein W precursor |
|||
|
ompW
|
outer membrane protein W precursor
|
||
|
Position: -51
Score: 4.3 Sequence: TTTTGTGAGCTGCATCACGGCA
Locus tag: Sama_1307
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -111
Score: 5 Sequence: AATTGTGATTTGAGTCACGCTA
Locus tag: Sama_2219
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Sama_2218
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|||
|
fahA
|
Fumarylacetoacetate hydrolase family protein
|
||
|
maiA
|
Maleylacetoacetate isomerase (EC 5.2.1.2)
|
||
|
Position: -78
Score: 4.3 Sequence: AAACGTGATTTTACTCACGACT
Locus tag: Sama_0899
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
|||
|
yfiA-2
|
Ribosome hibernation protein YfiA
|
||
|
Position: -108
Score: 3.8 Sequence: TTTGTTGATCTGGATCATTAAT
Locus tag: Sama_0589
Name: Sfri_4035 Funciton: Conserved hypothetical signal peptide protein
Locus tag: Sama_0588
Name: Sfri_4034 Funciton: FMN-binding domain-containing protein
Locus tag: Sama_0587
Name: Sfri_4033 Funciton: PepSY-associated TM helix domain-containing protein |
|||
|
Sfri_4035
|
Conserved hypothetical signal peptide protein
|
||
|
Sfri_4034
|
FMN-binding domain-containing protein
|
||
|
Sfri_4033
|
PepSY-associated TM helix domain-containing protein
|
||
|
Position: -76
Score: 4.6 Sequence: AAACGTGAGGCAGTTAACAAAA
Locus tag: Sama_2222
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sama_2221
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
|||
|
phhA
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
|
||
|
phhB
|
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
|
||
|
Position: -194
Score: 4 Sequence: TATTGTGAAATCACGCAGAAAA
Locus tag: Sama_0395
Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Sama_0394
Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) |
|||
|
purH
|
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
|
||
|
purD
|
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
|
||
|
Position: -197
Score: 4 Sequence: TAATGGTATTAATATCAAATAT
Position: -40
Score: 3.7 Sequence: AGTCGTTATACTGGCCACAAAA
Locus tag: Sama_3096
Name: null Funciton: Outer membrane lipoprotein omp16 precursor
Locus tag: Sama_3095
Name: SO3967 Funciton: Molybdenum-binding periplasmic protein |
|||
|
Outer membrane lipoprotein omp16 precursor
|
|||
|
SO3967
|
Molybdenum-binding periplasmic protein
|
||
|
Position: -87
Score: 4.2 Sequence: CTGCTTGATGAGGATCACAATT
Locus tag: Sama_2599
Name: Sama_2599 Funciton: putative lipoprotein |
|||
|
Sama_2599
|
putative lipoprotein
|
||
|
Position: -38
Score: 4.5 Sequence: AAACTTGAGCCGCTTCACAAAT
Locus tag: Sama_3143
Name: Spea_3717 Funciton: hypothetical protein
Locus tag: Sama_3142
Name: omp_Zn Funciton: zinc-regulated TonB-dependent outer membrane receptor
Locus tag: Sama_3141
Name: znuA Funciton: zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: Sama_3140
Name: znuB Funciton: zinc ABC transporter, inner membrane permease protein ZnuB |
|||
|
Spea_3717
|
hypothetical protein
|
||
|
omp_Zn
|
zinc-regulated TonB-dependent outer membrane receptor
|
||
|
znuA
|
zinc ABC transporter, periplasmic-binding protein ZnuA
|
||
|
znuB
|
zinc ABC transporter, inner membrane permease protein ZnuB
|
||
|
Position: -195
Score: 3.9 Sequence: ATAAGCGATCCTGATCACAAGT
Locus tag: Sama_1869
Name: SO2535 Funciton: Predicted glutamine amidotransferase |
|||
|
SO2535
|
Predicted glutamine amidotransferase
|
||
|
Position: -78
Score: 4.5 Sequence: AATTGATACCCAGATCACATAT
Locus tag: Sama_1569
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
|||
|
hmgA
|
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
|
||
|
Position: -128
Score: 4.7 Sequence: TAATTTGATGTGAATCAACTTT
Locus tag: Sama_0550
Name: SO3890 Funciton: methyl-accepting chemotaxis protein |
|||
|
SO3890
|
methyl-accepting chemotaxis protein
|
||
|
Position: -240
Score: 4.1 Sequence: ACTCGTGATCAAGCTCACGGTT
Position: -99
Score: 4.1 Sequence: AATTTGGATGTGGGGCACATTT
Locus tag: Sama_0915
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
|||
|
phk
|
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
|
||
|
Position: -173
Score: 4.2 Sequence: ATCTGTGATGTGAATCATTCTT
Locus tag: Sama_1919
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
|||
|
ydhD
|
Probable monothiol glutaredoxin ydhD
|
||
|
Position: -285
Score: 4.1 Sequence: AAAAGAGACTTAGATCATATTT
Locus tag: Sama_2901
Name: null Funciton: hypothetical protein
Locus tag: Sama_2902
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Sama_2903
Name: nrfC Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Sama_2904
Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD |
|||
|
hypothetical protein
|
|||
|
nrfB
|
Cytochrome c-type protein NrfB precursor
|
||
|
nrfC
|
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
|
||
|
nrfD-2
|
nitrite reductase, quinol dehydrogenase component, NrfD
|
||
|
Position: -193
Score: 3.8 Sequence: TGCTGTGCAGTGTATCACAAAG
Locus tag: Sama_0032
Name: fadB Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Sama_0031
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|||
|
fadB
|
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
fadA
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Position: -189
Score: 3.9 Sequence: CGGCGTGACACTCATCACACTT
Locus tag: Sama_1213
Name: mtrD Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Sama_1212
Name: mtrE Funciton: outer membrane protein, MtrE
Locus tag: Sama_1211
Name: mtrF Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Sama_1210
Name: omcA Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA |
|||
|
mtrD
|
periplasmic decaheme cytochrome c, MtrD
|
||
|
mtrE
|
outer membrane protein, MtrE
|
||
|
mtrF
|
surface localized decaheme cytochrome c lipoprotein, MtrF
|
||
|
omcA
|
surface localized decaheme cytochrome c lipoprotein, OmcA
|
||
|
Position: -144
Score: 4.2 Sequence: ACTTGTGATGTAGCCCAAAGAT
Locus tag: Sama_1688
Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
|||
|
fumB
|
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
|
||
|
Position: -297
Score: 3.9 Sequence: AATTGTGATATTGAACAATATG
Locus tag: Sama_2750
Name: SO0939 Funciton: split-soret diheme cytochrome c
Locus tag: Sama_2751
Name: null Funciton: hypothetical protein |
|||
|
SO0939
|
split-soret diheme cytochrome c
|
||
|
hypothetical protein
|
|||
|
Position: -142
Score: 4 Sequence: AACTGGTATTTCGATCACAATT
Locus tag: Sama_3011
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Sama_3010
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Sama_3009
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Sama_3008
Name: SO0620 Funciton: FIG008480: hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
FIG008480: hypothetical protein
|
||
|
Position: -89
Score: 5.1 Sequence: ATTTGCGATAGAGATCACATTT
Locus tag: Sama_3254
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Sama_3255
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Sama_3256
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: Sama_3257
Name: hemY Funciton: HemY domain-containing protein |
|||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemX
|
Homolog of E. coli HemX protein
|
||
|
hemY
|
HemY domain-containing protein
|
||
|
Position: -113
Score: 3.6 Sequence: TAAGATGATCTGCTTCAAGGAA
Locus tag: Sama_0895
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Sama_0896
Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|||
|
hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
|
||
|
hcr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
Position: -140
Score: 4.8 Sequence: TTATGTGATGATTGTCAAAAAT
Locus tag: Sama_1934
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
fadD1
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -268
Score: 3.9 Sequence: AAACGTCACATAGATCACACAC
Locus tag: Sama_3178
Name: SO4142 Funciton: cytochrome c family protein
Locus tag: Sama_3179
Name: SO4143 Funciton: hypothetical protein
Locus tag: Sama_3180
Name: SO4144 Funciton: octaheme tetrathionate reductase |
|||
|
SO4142
|
cytochrome c family protein
|
||
|
SO4143
|
hypothetical protein
|
||
|
SO4144
|
octaheme tetrathionate reductase
|
||
|
Position: -109
Score: 4 Sequence: CTTTGTGATACACTGCACAGCA
Locus tag: Sama_0033
Name: pepQ Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Sama_0034
Name: SO0023 Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Sama_0035
Name: trkH-1 Funciton: potassium uptake protein TrkH
Locus tag: Sama_0036
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) |
|||
|
pepQ
|
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
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SO0023
|
FIG000605: protein co-occurring with transport systems (COG1739)
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trkH-1
|
potassium uptake protein TrkH
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hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
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Position: -214
Score: 4.8 Sequence: AAGTGTGATCACTATCACATCA
Locus tag: Sama_0546
Name: SO3895 Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL |
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SO3895
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HesA/MoeB/ThiF family protein related to EC-YgdL
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Position: -112
Score: 3.6 Sequence: AAGTTAGAATCGGGTCACACTT
Locus tag: Sama_2168
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Sama_2167
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadI
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -88
Score: 4.4 Sequence: TATAGTGAGTTCAATCACAATC
Locus tag: Sama_3282
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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ilvC
|
Ketol-acid reductoisomerase (EC 1.1.1.86)
|
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Position: -138
Score: 3.9 Sequence: TATTGTTACTGGCAGCAAACAA
Locus tag: Sama_0922
Name: mviN Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: Sama_0923
Name: ribF Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: Sama_0924
Name: ileS Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: Sama_0925
Name: lspA Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: Sama_0926
Name: fkbP-2 Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: Sama_0927
Name: lytB Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: Sama_0928
Name: pilV Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: Sama_0929
Name: pilW Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: Sama_0930
Name: pilX Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: Sama_0931
Name: pilY1 Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: Sama_0932
Name: pilE Funciton: type IV pilus biogenesis protein PilE |
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mviN
|
proposed peptidoglycan lipid II flippase MurJ
|
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ribF
|
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
|
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ileS
|
isoleucyl-tRNA synthetase (EC 6.1.1.5)
|
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lspA
|
lipoprotein signal peptidase (EC 3.4.23.36)
|
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fkbP-2
|
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
|
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lytB
|
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
|
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pilV
|
type IV fimbrial biogenesis protein PilV
|
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pilW
|
type IV fimbrial biogenesis protein PilW
|
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pilX
|
type IV fimbrial biogenesis protein PilX
|
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pilY1
|
type IV fimbrial biogenesis protein PilY1
|
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pilE
|
type IV pilus biogenesis protein PilE
|
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|
Position: -67
Score: 4.1 Sequence: AACCGCGACCGCCATCACATTT
Locus tag: Sama_1375
Name: atoB Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sama_1376
Name: mmsA Funciton: methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sama_1377
Name: SO1679 Funciton: branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sama_1378
Name: SO1680 Funciton: enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sama_1379
Name: SO1681 Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sama_1380
Name: mmsB Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sama_1381
Name: fabG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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atoB
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
|
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mmsA
|
methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
|
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SO1679
|
branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
|
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SO1680
|
enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
|
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SO1681
|
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
|
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mmsB
|
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
|
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fabG
|
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
|
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Position: -46
Score: 3.8 Sequence: TTTGAGGATCTACCTCACAAAT
Locus tag: Sama_0672
Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37) |
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mdh
|
malate dehydrogenase (EC 1.1.1.37)
|
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Position: -91
Score: 4.2 Sequence: AAGAATGATTCACATCACAGAT
Locus tag: Sama_1920
Name: sodB Funciton: superoxide dismutase [Fe] (EC 1.15.1.1) |
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sodB
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superoxide dismutase [Fe] (EC 1.15.1.1)
|
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Position: -64
Score: 4.3 Sequence: ACTTGTGATCAGGATCGCTTAT
Locus tag: Sama_1870
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE2
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
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Position: -171
Score: 3.9 Sequence: AAATATGCGCTGCTTAACAAAA
Locus tag: Sama_3604
Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
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SO4520
|
Oxygen-independent coproporphyrinogen III oxidase, putative
|
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Position: -137
Score: 4.2 Sequence: AAGTGTGACCCGATTCTAACTT
Locus tag: Sama_2169
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Sama_2170
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: Sama_2171
Name: null Funciton: hypothetical protein
Locus tag: Sama_2172
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: Sama_2173
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: Sama_2174
Name: SO3095 Funciton: hypothetical protein |
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SO3090
|
MoxR-like ATPase in aerotolerance operon
|
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SO3091
|
Conserved hypothetical protein
|
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|
hypothetical protein
|
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SO3093
|
von Willebrand factor type A domain protein
|
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SO3094
|
TPR domain protein in aerotolerance operon
|
||
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SO3095
|
hypothetical protein
|
||
|
Position: -226
Score: 4.7 Sequence: TTGTGTGATCTTGCGCACGTTA
Locus tag: Sama_2091
Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26) |
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SO2753
|
prolyl endopeptidase (EC 3.4.21.26)
|
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Position: -157
Score: 4.3 Sequence: AATTGTGACGCCGCTCACTCAG
Locus tag: Sama_3523
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
|
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Position: -304
Score: 4.5 Sequence: TTTTGTTAACTGCCTCACGTTT
Locus tag: Sama_2223
Name: null Funciton: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
Locus tag: Sama_2224
Name: null Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: Sama_2225
Name: null Funciton: ferredoxin-type protein NapF
Locus tag: Sama_2226
Name: null Funciton: Protein of unknown function DUF583
Locus tag: Sama_2227
Name: null Funciton: Transcriptional regulator, LysR family
Locus tag: Sama_2228
Name: mtrF Funciton: decaheme cytochrome c MtrF |
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UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
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UDP-glucose 4-epimerase (EC 5.1.3.2)
|
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ferredoxin-type protein NapF
|
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|
Protein of unknown function DUF583
|
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|
Transcriptional regulator, LysR family
|
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mtrF
|
decaheme cytochrome c MtrF
|
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|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |