Regulon of Crp in Shewanella sp MR-7
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr7_3412 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 345 |
| - Operons | 179 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -315
Score: 3.9 Sequence: AAGTATGAATCAGGTCACACTC
Locus tag: Shewmr7_3593
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
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2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -241
Score: 4.9 Sequence: AAACGAGATCTAAATCACATTT
Locus tag: Shewmr7_1204
Name: SO3421 Funciton: b-type cytochrome, putative |
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SO3421
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b-type cytochrome, putative
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Position: -135
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Shewmr7_1472
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Shewmr7_1473
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadI
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -178
Score: 4.2 Sequence: GTTAGTGATGGCGATCACAAAC
Locus tag: Shewmr7_2259
Name: SO2586 Funciton: inactive homolog of metal-dependent proteases, putative molecular chaperone
Locus tag: Shewmr7_2258
Name: SO2585 Funciton: hypothetical protein
Locus tag: Shewmr7_2257
Name: SO2584 Funciton: Tlr1621 protein |
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SO2586
|
inactive homolog of metal-dependent proteases, putative molecular chaperone
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SO2585
|
hypothetical protein
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SO2584
|
Tlr1621 protein
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Position: -77
Score: 3.8 Sequence: AAGCGTGAACTTAAGCACACTC
Locus tag: Shewmr7_3587
Name: SO0439 Funciton: hypothetical protein |
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SO0439
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hypothetical protein
|
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Position: -273
Score: 4.3 Sequence: CAATGTGAGCTAGTTAACATCA
Locus tag: Shewmr7_1131
Name: SO1247 Funciton: hypothetical protein |
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SO1247
|
hypothetical protein
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Position: -109
Score: 4 Sequence: AAAATCGATTTTGCTCACACAA
Locus tag: Shewmr7_2950
Name: SO1328 Funciton: transcriptional regulator, LysR family |
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SO1328
|
transcriptional regulator, LysR family
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Position: -134
Score: 4.9 Sequence: TAATGTGATATGTATTAAATTA
Locus tag: Shewmr7_0697
Name: SO3914 Funciton: ferrichrome-iron receptor
Locus tag: Shewmr7_0698
Name: piuC Funciton: iron-uptake factor PiuC |
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SO3914
|
ferrichrome-iron receptor
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piuC
|
iron-uptake factor PiuC
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Position: -80
Score: 4.8 Sequence: AAATTTGAGCTTGATCACACTA
Locus tag: Shewmr7_0089
Name: Shewana3_0095 Funciton: hypothetical protein |
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Shewana3_0095
|
hypothetical protein
|
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Position: -113
Score: 4.1 Sequence: AAATGTGCGATGAGTAACAAAA
Locus tag: Shewmr7_3448
Name: bfd Funciton: bacterioferritin-associated ferredoxin |
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bfd
|
bacterioferritin-associated ferredoxin
|
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Position: -260
Score: 4.2 Sequence: ACTTGTGATCTTTAGCGCGTAT
Locus tag: Shewmr7_1227
Name: SO3395 Funciton: hypothetical protein |
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SO3395
|
hypothetical protein
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Position: -135
Score: 3.9 Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: Shewmr7_1103
Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewmr7_1104
Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewmr7_1105
Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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thymidine phosphorylase (EC 2.4.2.4)
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deoB
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phosphopentomutase (EC 5.4.2.7)
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deoD-2
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purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -292
Score: 3.8 Sequence: AAGTTTGAACCTTAGCAAAATT
Locus tag: Shewmr7_3083
Name: SO3588 Funciton: gpr1/fun34/yaaH family protein |
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SO3588
|
gpr1/fun34/yaaH family protein
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Position: -85
Score: 4.4 Sequence: GGATGTGACTTGCCTCACAATT
Locus tag: Shewmr7_1212
Name: swp_3747 Funciton: hypothetical protein |
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swp_3747
|
hypothetical protein
|
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Position: -249
Score: 3.7 Sequence: TATTGTGAGTTAGGTCATGTCG
Position: -60
Score: 4.1 Sequence: AAAAATGAACTAGATCAAAATA
Locus tag: Shewmr7_2991
Name: SO1278 Funciton: methyl-accepting chemotaxis protein |
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SO1278
|
methyl-accepting chemotaxis protein
|
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Position: -149
Score: 3.9 Sequence: AACTTTGATCCCGATCGACTAT
Locus tag: Shewmr7_3317
Name: napD Funciton: periplasmic nitrate reductase component NapD
Locus tag: Shewmr7_3318
Name: napA Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewmr7_3319
Name: napG Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: Shewmr7_3320
Name: napH Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shewmr7_3321
Name: napB Funciton: nitrate reductase cytochrome c550-type subunit |
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napD
|
periplasmic nitrate reductase component NapD
|
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napA
|
periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
|
ferredoxin-type protein NapG (periplasmic nitrate reductase)
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napH
|
polyferredoxin NapH (periplasmic nitrate reductase)
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napB
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nitrate reductase cytochrome c550-type subunit
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Position: -150
Score: 4.5 Sequence: AAATGTTATCTTTATCACTCAA
Locus tag: Shewmr7_2889
Name: SO1389 Funciton: ROK family protein, in a cluster with chitinase |
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SO1389
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ROK family protein, in a cluster with chitinase
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Position: -233
Score: 4.5 Sequence: TTGAGTGATAAAGATAACATTT
Locus tag: Shewmr7_2890
Name: SO1388 Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
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SO1388
|
Xaa-Pro aminopeptidase (EC 3.4.11.9)
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Position: -103
Score: 4.8 Sequence: TTAGGTGATCTTTGTCACAAAT
Locus tag: Shewmr7_1636
Name: yceI Funciton: hypothetical protein
Locus tag: Shewmr7_1637
Name: SO2891 Funciton: type IIA topoisomerase, B subunit |
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yceI
|
hypothetical protein
|
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SO2891
|
type IIA topoisomerase, B subunit
|
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Position: -132
Score: 3.7 Sequence: CACTATGATCTGCTTCTAATTT
Position: -103
Score: 3.7 Sequence: TAATGAGCCCCGCTTCAAACTT
Locus tag: Shewmr7_3428
Name: petA Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Shewmr7_3427
Name: petB Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Shewmr7_3426
Name: petC Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Shewmr7_3425
Name: sspA Funciton: stringent starvation protein A
Locus tag: Shewmr7_3424
Name: sspB Funciton: stringent starvation protein B |
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petA
|
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
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petB
|
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
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petC
|
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
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sspA
|
stringent starvation protein A
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sspB
|
stringent starvation protein B
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Position: -136
Score: 4.1 Sequence: TTCCTTGATTTAGATCACACTC
Locus tag: Shewmr7_2723
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -208
Score: 3.9 Sequence: AAATGTGATCTACGCCTAAATG
Locus tag: Shewmr7_1681
Name: icd Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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icd
|
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Position: -161
Score: 4.1 Sequence: TTTCGTGAGCTAGATTAGATAT
Locus tag: Shewmr7_0128
Name: SO0141 Funciton: sensory box/GGDEF family protein |
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SO0141
|
sensory box/GGDEF family protein
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Position: -96
Score: 4.6 Sequence: AAGTGTGATATTTGCCACAAAA
Locus tag: Shewmr7_2654
Name: SO1689 Funciton: lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4) |
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SO1689
|
lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
|
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Position: -63
Score: 3.8 Sequence: TATTTTGATATTGAATAAAATA
Position: -34
Score: 3.7 Sequence: TGATGTGCGAGTGTTCAAATAG
Position: -2
Score: 4 Sequence: TTATGTTATTATTGCCACAAAA
Locus tag: Shewmr7_1757
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
|
probable membrane protein YcbW
|
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Position: -88
Score: 4.8 Sequence: TTATGCGAGCGAAATCACATTT
Locus tag: Shewmr7_2487
Name: SO2797 Funciton: glutaredoxin |
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SO2797
|
glutaredoxin
|
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Position: -246
Score: 3.8 Sequence: CAATGTGTGCCTGCGCACATTA
Locus tag: Shewmr7_3240
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: Shewmr7_3239
Name: SO0941 Funciton: hypothetical protein |
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cadC
|
transcriptional regulator-related protein
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SO0941
|
hypothetical protein
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Position: -70
Score: 4.5 Sequence: TTTTGTAACTATGATCACACAA
Locus tag: Shewmr7_3056
Name: SO3553 Funciton: putative sulfate permease
Locus tag: Shewmr7_3057
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Shewmr7_3058
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Shewmr7_3059
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
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SO3553
|
putative sulfate permease
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purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
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purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
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SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
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Position: -144
Score: 4.2 Sequence: AGTCGCGACTTTGTTCACAATT
Locus tag: Shewmr7_1101
Name: tsx Funciton: nucleoside-specific channel-forming protein, Tsx |
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tsx
|
nucleoside-specific channel-forming protein, Tsx
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Position: -316
Score: 4.5 Sequence: TTTTCTGACACCGCTCACATTA
Locus tag: Shewmr7_3913
Name: Sputcn32_3857 Funciton: hypothetical protein
Locus tag: Shewmr7_3914
Name: Sputcn32_3858 Funciton: cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: Shewmr7_3915
Name: Sputcn32_3859 Funciton: cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: Shewmr7_3916
Name: Sputcn32_3860 Funciton: cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: Shewmr7_3917
Name: Sputcn32_3861 Funciton: cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: Shewmr7_3918
Name: Sputcn32_3862 Funciton: heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB |
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Sputcn32_3857
|
hypothetical protein
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Sputcn32_3858
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cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
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Sputcn32_3859
|
cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
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Sputcn32_3860
|
cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
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Sputcn32_3861
|
cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
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Sputcn32_3862
|
heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
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Position: -225
Score: 3.8 Sequence: ATGCGTGATCCGTCGCAATTAT
Position: -131
Score: 3.9 Sequence: TTTGATGATCCACCTCAAACAA
Locus tag: Shewmr7_3786
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_3787
Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shewmr7_3788
Name: SO4506 Funciton: iron-sulfur cluster-binding protein
Locus tag: Shewmr7_3789
Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shewmr7_3790
Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shewmr7_3791
Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3792
Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewmr7_3793
Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) |
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hypothetical protein
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SO4505
|
hypothetical protein probably related to Formate dehydrogenase function
|
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SO4506
|
iron-sulfur cluster-binding protein
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SO4507
|
putative formate dehydrogenase-specific chaperone
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SO4508
|
formate dehydrogenase subunit or accessory protein
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SO4509
|
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
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fdhB-1
|
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
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SO4511
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formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
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Position: -125
Score: 4.1 Sequence: AATTGTGCCGGATATCACTTTC
Locus tag: Shewmr7_2463
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -149
Score: 3.8 Sequence: CTCAATGATCCAGCTCACACTT
Locus tag: Shewmr7_0147
Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
|
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
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Position: -66
Score: 3.9 Sequence: TTACGTGACTTACAGCACGTCT
Locus tag: Shewmr7_0778
Name: sfcA Funciton: NAD-dependent malic enzyme (EC 1.1.1.38) |
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sfcA
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NAD-dependent malic enzyme (EC 1.1.1.38)
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Position: -83
Score: 4.1 Sequence: TCTTGTGACCTAGTTCACGCCT
Locus tag: Shewmr7_3370
Name: SO3987 Funciton: hypothetical protein |
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SO3987
|
hypothetical protein
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Position: -312
Score: 4.2 Sequence: TATTGTAATTTAATCAACATTT
Locus tag: Shewmr7_0460
Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Shewmr7_0461
Name: mshH Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Shewmr7_0462
Name: mshI Funciton: MSHA biogenesis protein MshI |
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SO4118
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NADP-dependent malic enzyme (EC 1.1.1.40)
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mshH
|
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
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mshI
|
MSHA biogenesis protein MshI
|
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Position: -128
Score: 4.1 Sequence: AAGCGTGATGGATTTTGCAAAA
Locus tag: Shewmr7_3880
Name: yhgI Funciton: NfuA Fe-S protein maturation |
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yhgI
|
NfuA Fe-S protein maturation
|
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Position: -30
Score: 3.8 Sequence: TAACGTGTTCTACAACAAACTA
Locus tag: Shewmr7_0844
Name: SO3776 Funciton: hypothetical protein |
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SO3776
|
hypothetical protein
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Position: -255
Score: 4.1 Sequence: AAGTGTGATCAAGATCGCGTGT
Position: -234
Score: 4.3 Sequence: TTTTTTGATTCAGATCAAAGAC
Locus tag: Shewmr7_2143
Name: rplY Funciton: LSU ribosomal protein L25p |
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rplY
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LSU ribosomal protein L25p
|
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Position: -120
Score: 4.4 Sequence: TAGAGTGAGATTAATCACAGTT
Locus tag: Shewmr7_0940
Name: fkpA Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) |
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fkpA
|
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
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Position: -131
Score: 4.4 Sequence: TATAGTGTTGTCCGTCACATTT
Locus tag: Shewmr7_0850
Name: SO3774 Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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SO3774
|
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Position: -53
Score: 4.5 Sequence: TTTTGTTATACTCGTCACCTTT
Locus tag: Shewmr7_0828
Name: SO3797 Funciton: probable collagenase (EC 3.4.24.3) |
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SO3797
|
probable collagenase (EC 3.4.24.3)
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Position: -143
Score: 3.9 Sequence: TTATGCGATATTGTTCTAATTC
Locus tag: Shewmr7_3304
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Shewmr7_3305
Name: SO0861 Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress |
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serA
|
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
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SO0861
|
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
|
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Position: -70
Score: 4.5 Sequence: TTTTGTAACTATGATCACACAA
Locus tag: Shewmr7_3056
Name: SO3553 Funciton: putative sulfate permease |
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SO3553
|
putative sulfate permease
|
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Position: -150
Score: 4.1 Sequence: CGGTGTGATCAGGATCTCAGTT
Locus tag: Shewmr7_2569
Name: miaE Funciton: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) |
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miaE
|
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
|
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Position: -255
Score: 4.3 Sequence: AGATGTGATCTAGATCGGCTTA
Locus tag: Shewmr7_2839
Name: Sputcn32_1245 Funciton: transcriptional regulator, MarR family |
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Sputcn32_1245
|
transcriptional regulator, MarR family
|
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Position: -131
Score: 3.9 Sequence: AAGTGTGAACAACAACACTATT
Position: -108
Score: 4.1 Sequence: CATTTTGATCTAGCGCAAACTT
Locus tag: Shewmr7_3363
Name: nrfA Funciton: cytochrome c552 precursor (EC 1.7.2.2) |
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nrfA
|
cytochrome c552 precursor (EC 1.7.2.2)
|
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Position: -66
Score: 4.6 Sequence: TTTTGTGAAACGTTTCACTATT
Position: -25
Score: 3.8 Sequence: TAGCGTGTTTTTCATCGAATTT
Locus tag: Shewmr7_0290
Name: SO0319 Funciton: conserved domain protein
Locus tag: Shewmr7_0291
Name: SO0320 Funciton: conserved domain protein
Locus tag: Shewmr7_0292
Name: SO0321 Funciton: hypothetical protein |
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SO0319
|
conserved domain protein
|
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SO0320
|
conserved domain protein
|
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SO0321
|
hypothetical protein
|
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|
Position: -267
Score: 4.4 Sequence: ATGTGTGAATAGGGTCAAATAT
Locus tag: Shewmr7_0289
Name: SO0318 Funciton: hypothetical protein |
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SO0318
|
hypothetical protein
|
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|
Position: -166
Score: 3.7 Sequence: TGACGTGATTTGTGGCGTATAA
Locus tag: Shewmr7_3149
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_3148
Name: SO3681 Funciton: universal stress protein family
Locus tag: Shewmr7_3147
Name: Shewana3_3248 Funciton: UspA domain-containing protein |
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|
hypothetical protein
|
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SO3681
|
universal stress protein family
|
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|
Shewana3_3248
|
UspA domain-containing protein
|
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|
Position: -100
Score: 3.9 Sequence: GTCTTTGATCTGAATCAAAAAA
Position: -79
Score: 4.3 Sequence: ACACGCGATCTTGATCACACTT
Locus tag: Shewmr7_2144
Name: SO2111 Funciton: hypothetical protein |
|||
|
SO2111
|
hypothetical protein
|
||
|
Position: -205
Score: 4 Sequence: TTTTGTGAGCAAGAGCTAAATA
Position: -153
Score: 4.8 Sequence: CAAAGTGATACAGCTCACATTA
Locus tag: Shewmr7_1867
Name: gloA Funciton: lactoylglutathione lyase (EC 4.4.1.5) |
|||
|
gloA
|
lactoylglutathione lyase (EC 4.4.1.5)
|
||
|
Position: -255
Score: 4.3 Sequence: AGATGTGATCTAGATCGGCTTA
Locus tag: Shewmr7_2839
Name: Sputcn32_1245 Funciton: transcriptional regulator, MarR family |
|||
|
Sputcn32_1245
|
transcriptional regulator, MarR family
|
||
|
Position: -319
Score: 5.2 Sequence: AAGTGTGACGTGTGTCACATTT
Position: -275
Score: 4.3 Sequence: AAATGTTATTTTATTAACAGTA
Locus tag: Shewmr7_2075
Name: null Funciton: TonB-dependent receptor |
|||
|
TonB-dependent receptor
|
|||
|
Position: -187
Score: 3.9 Sequence: TTGGGTGAGCGCTGTCACAGTT
Locus tag: Shewmr7_3748
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewmr7_3747
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewmr7_3746
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewmr7_3745
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewmr7_3744
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewmr7_3743
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Shewmr7_3742
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
|||
|
moaA
|
molybdenum cofactor biosynthesis protein MoaA
|
||
|
moaC
|
molybdenum cofactor biosynthesis protein MoaC
|
||
|
moaD
|
molybdenum cofactor biosynthesis protein MoaD
|
||
|
moaE
|
molybdenum cofactor biosynthesis protein MoaE
|
||
|
modA
|
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
|
||
|
modB
|
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
|
||
|
modC
|
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
|
||
|
Position: -56
Score: 4.3 Sequence: AACTGTGATTAATCTCACTCTA
Locus tag: Shewmr7_0939
Name: SO1064 Funciton: FOG: WD40 repeat
Locus tag: Shewmr7_0938
Name: slyX Funciton: protein SlyX
Locus tag: Shewmr7_0937
Name: def-2 Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Shewmr7_0936
Name: SO1061 Funciton: TPR domain protein
Locus tag: Shewmr7_0935
Name: spaP Funciton: Putative lipoprotein
Locus tag: Shewmr7_0934
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_0933
Name: Shewmr4_2117 Funciton: transposase
Locus tag: Shewmr7_0932
Name: SO1059 Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2) |
|||
|
SO1064
|
FOG: WD40 repeat
|
||
|
slyX
|
protein SlyX
|
||
|
def-2
|
peptide deformylase (EC 3.5.1.88)
|
||
|
SO1061
|
TPR domain protein
|
||
|
spaP
|
Putative lipoprotein
|
||
|
hypothetical protein
|
|||
|
Shewmr4_2117
|
transposase
|
||
|
SO1059
|
membrane alanine aminopeptidase N (EC 3.4.11.2)
|
||
|
Position: -97
Score: 4.1 Sequence: TTTTGTGCGCATCTTCATAAAT
Locus tag: Shewmr7_0295
Name: ygbA Funciton: nitrosative stress induced protein |
|||
|
ygbA
|
nitrosative stress induced protein
|
||
|
Position: -186
Score: 4.3 Sequence: AAACGCGATCTTTATCACTATT
Locus tag: Shewmr7_1440
Name: SO3120 Funciton: oxidoreductase, Gfo/Idh/MocA family |
|||
|
SO3120
|
oxidoreductase, Gfo/Idh/MocA family
|
||
|
Position: -96
Score: 4.2 Sequence: CATTGTGAAGCGTATCATGTAA
Locus tag: Shewmr7_0444
Name: SO4138 Funciton: hypothetical protein |
|||
|
SO4138
|
hypothetical protein
|
||
|
Position: -234
Score: 4 Sequence: CAATTTGATGTGGTTCCAATAA
Position: -125
Score: 3.7 Sequence: CGCTGAGATTCTAATCACAAAA
Locus tag: Shewmr7_0227
Name: scyA Funciton: cytochrome c-type protein |
|||
|
scyA
|
cytochrome c-type protein
|
||
|
Position: -266
Score: 4.5 Sequence: ATGTGTGACATGGATCTAATTT
Locus tag: Shewmr7_0613
Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon |
|||
|
argR
|
arginine pathway regulatory protein ArgR, repressor of arg regulon
|
||
|
Position: -95
Score: 4 Sequence: TCTTGTGAATTGAGTCACAGAG
Locus tag: Shewmr7_2496
Name: SO2806 Funciton: hypothetical protein |
|||
|
SO2806
|
hypothetical protein
|
||
|
Position: -105
Score: 3.9 Sequence: CCGTGTGAGGTATTTCGCAAAT
Locus tag: Shewmr7_1580
Name: SO2858 Funciton: hypothetical protein
Locus tag: Shewmr7_1581
Name: SO2857 Funciton: sodium solute symporter family protein
Locus tag: Shewmr7_1582
Name: SO2856 Funciton: predicted signal-transduction protein containing cAMP-binding and CBS domains
Locus tag: Shewmr7_1583
Name: SO2855 Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7) |
|||
|
SO2858
|
hypothetical protein
|
||
|
SO2857
|
sodium solute symporter family protein
|
||
|
SO2856
|
predicted signal-transduction protein containing cAMP-binding and CBS domains
|
||
|
SO2855
|
DNA polymerase III epsilon subunit (EC 2.7.7.7)
|
||
|
Position: -318
Score: 4.1 Sequence: TTTTGTGAGCAAGCTAGAATTA
Locus tag: Shewmr7_0906
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Shewmr7_0907
Name: SO3719 Funciton: hypothetical protein |
|||
|
hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
|
||
|
SO3719
|
hypothetical protein
|
||
|
Position: -92
Score: 4.1 Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Shewmr7_0447
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -66
Score: 4.1 Sequence: GAGTGTGACCTGATTCATACTT
Locus tag: Shewmr7_3592
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
|||
|
acnB
|
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
|
||
|
Position: -94
Score: 4.3 Sequence: TTACATGATACGCTTCACAATG
Locus tag: Shewmr7_0443
Name: Sputcn32_0539 Funciton: mechanosensitive ion channel
Locus tag: Shewmr7_0442
Name: SO4139 Funciton: tetratricopeptide repeat family protein |
|||
|
Sputcn32_0539
|
mechanosensitive ion channel
|
||
|
SO4139
|
tetratricopeptide repeat family protein
|
||
|
Position: -139
Score: 3.7 Sequence: AAGTTTGCGCTAGATCAAAATG
Position: -116
Score: 4.5 Sequence: AATAGTGTTGTTGTTCACACTT
Locus tag: Shewmr7_3364
Name: narQ Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Shewmr7_3365
Name: narP Funciton: Nitrate/nitrite response regulator protein |
|||
|
narQ
|
Nitrate/nitrite sensor protein (EC 2.7.3.-)
|
||
|
narP
|
Nitrate/nitrite response regulator protein
|
||
|
Position: -86
Score: 4.3 Sequence: TATAGTGATTTCAATCACAACC
Locus tag: Shewmr7_3665
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) |
|||
|
ilvC
|
Ketol-acid reductoisomerase (EC 1.1.1.86)
|
||
|
Position: -145
Score: 4.1 Sequence: TTTTGTGATTAAGCGCATAACT
Locus tag: Shewmr7_3487
Name: SO0544 Funciton: sensory box histidine kinase
Locus tag: Shewmr7_3486
Name: SO0544.1 Funciton: response regulator receiver protein |
|||
|
SO0544
|
sensory box histidine kinase
|
||
|
SO0544.1
|
response regulator receiver protein
|
||
|
Position: -191
Score: 4 Sequence: AGTTATGCGCTTAATCACAAAA
Locus tag: Shewmr7_3488
Name: SO0543 Funciton: hypothetical protein |
|||
|
SO0543
|
hypothetical protein
|
||
|
Position: -127
Score: 4.5 Sequence: AATAGTGAGCAATATCACGATT
Locus tag: Shewmr7_2790
Name: SO1539 Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1) |
|||
|
SO1539
|
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
|
||
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATTA
Locus tag: Shewmr7_3999
Name: cytcB Funciton: diheme cytochrome c4 |
|||
|
cytcB
|
diheme cytochrome c4
|
||
|
Position: -276
Score: 5 Sequence: AAGTGTGATCTTGTTCTCACTT
Position: -153
Score: 4.4 Sequence: CATTGAGATTTTTGTCACATAA
Locus tag: Shewmr7_2573
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: Shewmr7_2572
Name: feoB Funciton: Ferrous iron transport protein B |
|||
|
feoA
|
Ferrous iron transport protein A
|
||
|
feoB
|
Ferrous iron transport protein B
|
||
|
Position: -270
Score: 4.2 Sequence: TTTAGTGATATTAGTCAACTAA
Locus tag: Shewmr7_3411
Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor |
|||
|
sel1
|
Sel1 domain protein repeat-containing protein precursor
|
||
|
Position: -82
Score: 4.1 Sequence: AAACGCGAACTAACTCGCATTT
Locus tag: Shewmr7_2481
Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5) |
|||
|
cdd
|
cytidine deaminase (EC 3.5.4.5)
|
||
|
Position: -136
Score: 4.3 Sequence: AATTGTGAACTGAGTCGCTTTT
Locus tag: Shewmr7_3935
Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70) |
|||
|
prlC
|
Oligopeptidase A (EC 3.4.24.70)
|
||
|
Position: -149
Score: 4.7 Sequence: AATCGTGATATTGCTCACTATT
Locus tag: Shewmr7_2791
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
|||
|
icd
|
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
|
||
|
Position: -92
Score: 4.7 Sequence: AAGTGTGACGAACTTCTCATTT
Position: -52
Score: 3.9 Sequence: AAGTGTTAACATGAGCACACTT
Locus tag: Shewmr7_3637
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -167
Score: 4.6 Sequence: AAATGTGATATTGGTCTTAAAT
Locus tag: Shewmr7_2448
Name: Swoo_2741 Funciton: Alkyl hydroperoxide reductase subunit C-like protein |
|||
|
Swoo_2741
|
Alkyl hydroperoxide reductase subunit C-like protein
|
||
|
Position: -248
Score: 4.2 Sequence: TTATGTGAGCTGATGCAAGTTT
Locus tag: Shewmr7_0899
Name: cobA Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Shewmr7_0900
Name: cysD Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: Shewmr7_0901
Name: cysN Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: Shewmr7_0902
Name: Shew_1424 Funciton: sulfate permease, Trk-type
Locus tag: Shewmr7_0903
Name: cysC Funciton: adenylylsulfate kinase (EC 2.7.1.25) |
|||
|
cobA
|
uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
|
||
|
cysD
|
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
|
||
|
cysN
|
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
|
||
|
Shew_1424
|
sulfate permease, Trk-type
|
||
|
cysC
|
adenylylsulfate kinase (EC 2.7.1.25)
|
||
|
Position: -74
Score: 5.2 Sequence: AAATGTGATCTGTCTTACATTT
Locus tag: Shewmr7_1050
Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Shewmr7_1049
Name: lipA Funciton: Lipoate synthase |
|||
|
lipB
|
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
|
||
|
lipA
|
Lipoate synthase
|
||
|
Position: -96
Score: 4.7 Sequence: TAATGTGATCGGGGTAATATTT
Locus tag: Shewmr7_3998
Name: engB Funciton: GTP-binding protein EngB |
|||
|
engB
|
GTP-binding protein EngB
|
||
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATTA
Locus tag: Shewmr7_3999
Name: cytcB Funciton: Cytochrome c4 |
|||
|
cytcB
|
Cytochrome c4
|
||
|
Position: -95
Score: 4.4 Sequence: AAAAGCGACTCAGTTCACAATT
Locus tag: Shewmr7_3936
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -113
Score: 4.7 Sequence: TATTGTGATCAGTATCAAACAC
Locus tag: Shewmr7_3597
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
|||
|
lpdA
|
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
|
||
|
Position: -116
Score: 4.3 Sequence: AAACTTGATCTAAGTCACGCTA
Locus tag: Shewmr7_4014
Name: SO4743 Funciton: ferrichrome-iron receptor
Locus tag: Shewmr7_4013
Name: deoR Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: Shewmr7_4012
Name: glmS Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
|||
|
SO4743
|
ferrichrome-iron receptor
|
||
|
deoR
|
transcriptional regulator of glmS gene, DeoR family
|
||
|
glmS
|
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
|
||
|
Position: -225
Score: 4.2 Sequence: ATTTAAGACCAATATCACATTT
Locus tag: Shewmr7_2449
Name: SO2757 Funciton: Histidine permease YuiF |
|||
|
SO2757
|
Histidine permease YuiF
|
||
|
Position: -172
Score: 4.2 Sequence: AAGTGTGCTCATGTTAACACTT
Position: -132
Score: 4.3 Sequence: AAATGAGAAGTTCGTCACACTT
Locus tag: Shewmr7_3638
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Shewmr7_3639
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Shewmr7_3640
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: Shewmr7_3641
Name: hemY Funciton: HemY domain-containing protein |
|||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemX
|
Homolog of E. coli HemX protein
|
||
|
hemY
|
HemY domain-containing protein
|
||
|
Position: -104
Score: 4.6 Sequence: AAATGTGATGTAGCCCAAAAAG
Locus tag: Shewmr7_2200
Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
|||
|
fumB
|
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
|
||
|
Position: -84
Score: 4.9 Sequence: ATTTGTTACATTTATCACATAA
Locus tag: Shewmr7_0988
Name: Sbal_2136 Funciton: putative OMR family iron-siderophore receptor precursor |
|||
|
Sbal_2136
|
putative OMR family iron-siderophore receptor precursor
|
||
|
Position: -144
Score: 3.9 Sequence: TTTTTAGATAGAGATAACAGAT
Position: -88
Score: 3.9 Sequence: AATTGATAAGAAGATCACACTA
Locus tag: Shewmr7_2363
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
|||
|
hmgA
|
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
|
||
|
Position: -53
Score: 5 Sequence: AAATGTGACGCGGATCACTTAT
Locus tag: Shewmr7_0079
Name: Sbal_4271 Funciton: membrane protein, HPP family |
|||
|
Sbal_4271
|
membrane protein, HPP family
|
||
|
Position: -76
Score: 3.9 Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewmr7_3622
Name: fdrC Funciton: fumarate reductase cytochrome b subunit
Locus tag: Shewmr7_3621
Name: frdA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewmr7_3620
Name: frdB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
fdrC
|
fumarate reductase cytochrome b subunit
|
||
|
frdA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -130
Score: 4 Sequence: TCCAATGATCCAGATCACATTT
Locus tag: Shewmr7_0762
Name: Shewana3_0734 Funciton: outer membrane porin, putative |
|||
|
Shewana3_0734
|
outer membrane porin, putative
|
||
|
Position: -75
Score: 4.5 Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: Shewmr7_2674
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shewmr7_2673
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
|||
|
phhA
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
|
||
|
phhB
|
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
|
||
|
Position: -156
Score: 4.4 Sequence: TTTTGTTACTCATCGCACATTT
Locus tag: Shewmr7_3447
Name: SO0584 Funciton: methyl-accepting chemotaxis protein |
|||
|
SO0584
|
methyl-accepting chemotaxis protein
|
||
|
Position: -287
Score: 3.8 Sequence: AGTTAAGATACAGAGCACATTA
Position: -92
Score: 4 Sequence: ACTTGAGACTAGTTTCACATTA
Locus tag: Shewmr7_3839
Name: Sbal_0179 Funciton: transcriptional regulator, LysR family
Locus tag: Shewmr7_3840
Name: menD Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: Shewmr7_3841
Name: SO4574 Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: Shewmr7_3842
Name: menC Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: Shewmr7_3843
Name: SO4576 Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26) |
|||
|
Sbal_0179
|
transcriptional regulator, LysR family
|
||
|
menD
|
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
|
||
|
SO4574
|
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
|
||
|
menC
|
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
|
||
|
SO4576
|
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
|
||
|
Position: -95
Score: 4.3 Sequence: AATTTGGATGTAGAACACATTT
Locus tag: Shewmr7_3047
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
|||
|
phk
|
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
|
||
|
Position: -228
Score: 3.7 Sequence: AATATTGCGTTAGCTCGCATTT
Position: -184
Score: 4.3 Sequence: TATCGTGATTAGTTGCATATAA
Locus tag: Shewmr7_0235
Name: ppc Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Shewmr7_0234
Name: yceB Funciton: uncharacterized lipoprotein YceB precursor |
|||
|
ppc
|
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
|
||
|
yceB
|
uncharacterized lipoprotein YceB precursor
|
||
|
Position: -155
Score: 5.1 Sequence: TTATGTGATGATGATCAAAATT
Locus tag: Shewmr7_2254
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
fadD1
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -251
Score: 4.2 Sequence: ATTCTTGATGCATATCAAGAAT
Position: -191
Score: 4.2 Sequence: TAACATGATGCAGATCTAATTT
Locus tag: Shewmr7_2154
Name: resA Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: Shewmr7_2153
Name: SO2101 Funciton: lipoprotein, putative
Locus tag: Shewmr7_2152
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_2151
Name: apbE Funciton: thiamin biosynthesis lipoprotein ApbE
Locus tag: Shewmr7_2150
Name: SO2104 Funciton: DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
Locus tag: Shewmr7_2149
Name: SO2105 Funciton: Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted |
|||
|
resA
|
C-type cytochrome biogenesis protein ResA (thioredoxin)
|
||
|
SO2101
|
lipoprotein, putative
|
||
|
hypothetical protein
|
|||
|
apbE
|
thiamin biosynthesis lipoprotein ApbE
|
||
|
SO2104
|
DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
|
||
|
SO2105
|
Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
|
||
|
Position: -129
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: Shewmr7_0974
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Shewmr7_0975
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Shewmr7_0976
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Shewmr7_0977
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Shewmr7_0978
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Shewmr7_0979
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
|||
|
nqrA-2
|
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
|
||
|
nqrB-2
|
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
|
||
|
nqrC-2
|
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
|
||
|
nqrD-1
|
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
|
||
|
nqrE-2
|
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
|
||
|
nqrF-2
|
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
|
||
|
Position: -102
Score: 4.5 Sequence: TATTTTGACGCATGTCAAAATT
Locus tag: Shewmr7_3457
Name: SO0572 Funciton: enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
SO0572
|
enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -172
Score: 4.4 Sequence: AAACATGATCTGCTTAACAAAA
Locus tag: Shewmr7_3801
Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
|||
|
SO4520
|
Oxygen-independent coproporphyrinogen III oxidase, putative
|
||
|
Position: -166
Score: 4.3 Sequence: AAATGTTACGCCTATCCCATAT
Locus tag: Shewmr7_3165
Name: SO3699.1 Funciton: hypothetical protein |
|||
|
SO3699.1
|
hypothetical protein
|
||
|
Position: -199
Score: 4.1 Sequence: TTATGTGATTTTCACAACAACA
Position: -157
Score: 3.8 Sequence: AATTGTAAATTTTTGCATATAT
Locus tag: Shewmr7_0448
Name: SO4131 Funciton: nucleoside-binding outer membrane protein |
|||
|
SO4131
|
nucleoside-binding outer membrane protein
|
||
|
Position: -239
Score: 4.3 Sequence: CAATGTGATTGATATCAATAAA
Locus tag: Shewmr7_3245
Name: nhaD Funciton: Na+/H+ antiporter NhaD type |
|||
|
nhaD
|
Na+/H+ antiporter NhaD type
|
||
|
Position: -142
Score: 4.1 Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: Shewmr7_0093
Name: hutC Funciton: histidine utilization repressor
Locus tag: Shewmr7_0094
Name: hutU Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Shewmr7_0095
Name: hutH Funciton: histidine ammonia-lyase (EC 4.3.1.3) |
|||
|
hutC
|
histidine utilization repressor
|
||
|
hutU
|
urocanate hydratase (EC 4.2.1.49)
|
||
|
hutH
|
histidine ammonia-lyase (EC 4.3.1.3)
|
||
|
Position: -174
Score: 3.5 Sequence: TTAGTTGACTAATATCACTAAA
Locus tag: Shewmr7_3412
Name: crp Funciton: Cyclic AMP receptor protein Crp |
|||
|
crp
|
Cyclic AMP receptor protein Crp
|
||
|
Position: -187
Score: 4.4 Sequence: TTTATTGATCTTTATCTCATTT
Position: -167
Score: 4.5 Sequence: TTTTGTGAATAGGCTAACAAAA
Locus tag: Shewmr7_0840
Name: cydD Funciton: Transport ATP-binding protein CydD
Locus tag: Shewmr7_0841
Name: cydC Funciton: Transport ATP-binding protein CydC
Locus tag: Shewmr7_0842
Name: cyaB Funciton: adenylate cyclase CyaB, putative |
|||
|
cydD
|
Transport ATP-binding protein CydD
|
||
|
cydC
|
Transport ATP-binding protein CydC
|
||
|
cyaB
|
adenylate cyclase CyaB, putative
|
||
|
Position: -49
Score: 4.5 Sequence: TTTTTTGAGATGAATCACCTAA
Locus tag: Shewmr7_3041
Name: mviN Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: Shewmr7_3040
Name: ribF Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: Shewmr7_3039
Name: ileS Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: Shewmr7_3038
Name: lspA Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: Shewmr7_3037
Name: fkbP-2 Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: Shewmr7_3036
Name: lytB Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: Shewmr7_3035
Name: pilV Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: Shewmr7_3034
Name: pilW Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: Shewmr7_3033
Name: pilX Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: Shewmr7_3032
Name: pilY1 Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: Shewmr7_3031
Name: pilE Funciton: type IV pilus biogenesis protein PilE |
|||
|
mviN
|
proposed peptidoglycan lipid II flippase MurJ
|
||
|
ribF
|
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
|
||
|
ileS
|
isoleucyl-tRNA synthetase (EC 6.1.1.5)
|
||
|
lspA
|
lipoprotein signal peptidase (EC 3.4.23.36)
|
||
|
fkbP-2
|
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
|
||
|
lytB
|
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
|
||
|
pilV
|
type IV fimbrial biogenesis protein PilV
|
||
|
pilW
|
type IV fimbrial biogenesis protein PilW
|
||
|
pilX
|
type IV fimbrial biogenesis protein PilX
|
||
|
pilY1
|
type IV fimbrial biogenesis protein PilY1
|
||
|
pilE
|
type IV pilus biogenesis protein PilE
|
||
|
Position: -118
Score: 4.5 Sequence: TTTATTGATGCATTTCACAGAT
Locus tag: Shewmr7_3244
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: Shewmr7_3243
Name: null Funciton: hypothetical protein |
|||
|
cadC
|
transcriptional regulator-related protein
|
||
|
hypothetical protein
|
|||
|
Position: -166
Score: 3.9 Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.2 Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewmr7_2155
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewmr7_2156
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewmr7_2157
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewmr7_2158
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewmr7_2159
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewmr7_2160
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
|||
|
hyaA
|
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
|
||
|
hyaB
|
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
|
||
|
hydC
|
Ni,Fe-hydrogenase I cytochrome b subunit
|
||
|
hyaD
|
Hydrogenase maturation protease (EC 3.4.24.-)
|
||
|
hyaE
|
NiFe hydrogenase assembly chaperone, HyaE
|
||
|
hyaF
|
NiFe hydrogenase assembly protein, HypF
|
||
|
Position: -99
Score: 5.2 Sequence: AAATGTGATCTGTGTCAAAAAA
Locus tag: Shewmr7_3838
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_3837
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shewmr7_3836
Name: nrfC Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shewmr7_3835
Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD |
|||
|
hypothetical protein
|
|||
|
nrfB
|
Cytochrome c-type protein NrfB precursor
|
||
|
nrfC
|
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
|
||
|
nrfD-2
|
nitrite reductase, quinol dehydrogenase component, NrfD
|
||
|
Position: -187
Score: 4 Sequence: TTGTTTGAGGTGGATCATCAAA
Position: -91
Score: 4 Sequence: AATTGCGACGGATCACGCATTT
Locus tag: Shewmr7_3785
Name: SO4503 Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shewmr7_3784
Name: SO4502 Funciton: conserved domain protein |
|||
|
SO4503
|
formate dehydrogenase chain D (EC 1.2.1.2)
|
||
|
SO4502
|
conserved domain protein
|
||
|
Position: -65
Score: 4.9 Sequence: TTTTGTGATCTTAATCACTGTA
Locus tag: Shewmr7_2329
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -55
Score: 4.3 Sequence: AATAGTGATTTTTATTGCAAAT
Locus tag: Shewmr7_2953
Name: Shewmr4_2871 Funciton: hypothetical protein
Locus tag: Shewmr7_2952
Name: SO1326 Funciton: COG1242: Predicted Fe-S oxidoreductase |
|||
|
Shewmr4_2871
|
hypothetical protein
|
||
|
SO1326
|
COG1242: Predicted Fe-S oxidoreductase
|
||
|
Position: -148
Score: 4.6 Sequence: TAGTGTGATCTTCTTATCAATT
Position: -92
Score: 3.9 Sequence: ATCTGTTATCTCTATCTAAAAA
Locus tag: Shewmr7_2362
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
|||
|
hmgR
|
Tyrosine degradation transcriptional regulator, LysR family
|
||
|
Position: -73
Score: 3.8 Sequence: TAATGGGTTCTTGCTCAAACAT
Locus tag: Shewmr7_1463
Name: putP Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter |
|||
|
putP
|
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
|
||
|
Position: -210
Score: 4.1 Sequence: CTTTGTGCAGTGTATCACAAAG
Locus tag: Shewmr7_0016
Name: fadB Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Shewmr7_0015
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|||
|
fadB
|
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
fadA
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Position: -144
Score: 4.2 Sequence: TTTTGTGATCCTCTTCTAAGAG
Position: -76
Score: 3.9 Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewmr7_3623
Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr7_3622
Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewmr7_3621
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewmr7_3620
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
frdC1
|
Fumarate reductase cytochrome b subunit
|
||
|
fdrC2
|
Fumarate reductase cytochrome b subunit
|
||
|
frdA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -171
Score: 4.3 Sequence: TTTTTTGACATGGCTCAAGTAT
Locus tag: Shewmr7_1969
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Shewmr7_1968
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Shewmr7_1967
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Shewmr7_1966
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
|||
|
ccoN
|
Cbb3-type cytochrome c oxidase, subunit I, CcoN
|
||
|
ccoO
|
Cbb3-type cytochrome c oxidase, subunit II, CcoO
|
||
|
ccoQ
|
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
|
||
|
ccoP
|
Cbb3-type cytochrome c oxidase, subunit III, CcoP
|
||
|
Position: -201
Score: 4.6 Sequence: AAAAGTGATTTATCTCACTAAA
Locus tag: Shewmr7_0372
Name: SO4232 Funciton: long-chain fatty acid transport protein
Locus tag: Shewmr7_0373
Name: glpK Funciton: glycerol kinase (EC 2.7.1.30) |
|||
|
SO4232
|
long-chain fatty acid transport protein
|
||
|
glpK
|
glycerol kinase (EC 2.7.1.30)
|
||
|
Position: -196
Score: 5.1 Sequence: AAATGTGATTTTGCTCACGCTA
Locus tag: Shewmr7_2671
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Shewmr7_2670
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|||
|
fahA
|
Fumarylacetoacetate hydrolase family protein
|
||
|
maiA
|
Maleylacetoacetate isomerase (EC 5.2.1.2)
|
||
|
Position: -159
Score: 4.2 Sequence: TTTTATGATACTTTTCATATTG
Locus tag: Shewmr7_3549
Name: SO4003 Funciton: response regulator |
|||
|
SO4003
|
response regulator
|
||
|
Position: -181
Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: Shewmr7_3584
Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Shewmr7_3585
Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) |
|||
|
purH
|
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
|
||
|
purD
|
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
|
||
|
Position: -193
Score: 4.4 Sequence: TTTGTTGATTGCGATCACAATT
Locus tag: Shewmr7_2222
Name: SO2535 Funciton: Predicted glutamine amidotransferase |
|||
|
SO2535
|
Predicted glutamine amidotransferase
|
||
|
Position: -175
Score: 4.3 Sequence: AACTGTGACAGCGCTCACCCAA
Locus tag: Shewmr7_3749
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
|||
|
etfD
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
|
||
|
Position: -78
Score: 5.1 Sequence: AAATGTGATTTAGATCTCGTTT
Locus tag: Shewmr7_1203
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
|||
|
yfiA-2
|
Ribosome hibernation protein YfiA
|
||
|
Position: -151
Score: 3.7 Sequence: AACTGAGATCCTGATCACACCG
Locus tag: Shewmr7_2570
Name: SO1787 Funciton: probable membrane protein YPO2362 |
|||
|
SO1787
|
probable membrane protein YPO2362
|
||
|
Position: -156
Score: 4.2 Sequence: AAAGGTGACGAGTATAACAAAA
Locus tag: Shewmr7_0827
Name: Sputcn32_0834 Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Shewmr7_0826
Name: asnC Funciton: regulatory protein AsnC |
|||
|
Sputcn32_0834
|
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
|
||
|
asnC
|
regulatory protein AsnC
|
||
|
Position: -165
Score: 4.4 Sequence: TTGTGTGATCATAGTTACAAAA
Locus tag: Shewmr7_3055
Name: SO3552 Funciton: Von Willebrand factor type A domain protein
Locus tag: Shewmr7_3054
Name: SO3551 Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Shewmr7_3053
Name: null Funciton: hypothetical protein |
|||
|
SO3552
|
Von Willebrand factor type A domain protein
|
||
|
SO3551
|
RNA polymerase sigma-70 factor, ECF subfamily
|
||
|
hypothetical protein
|
|||
|
Position: -204
Score: 4 Sequence: AAACTTGCATCAGCTCACATAA
Locus tag: Shewmr7_0898
Name: swp_4060 Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A |
|||
|
swp_4060
|
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
|
||
|
Position: -273
Score: 4 Sequence: CTTATTGATCTTATTCACGATT
Locus tag: Shewmr7_0507
Name: psrA Funciton: polysulfide reductase, subunit A
Locus tag: Shewmr7_0508
Name: psrB Funciton: polysulfide reductase, subunit B
Locus tag: Shewmr7_0509
Name: psrC Funciton: polysulfide reductase, subunit C |
|||
|
psrA
|
polysulfide reductase, subunit A
|
||
|
psrB
|
polysulfide reductase, subunit B
|
||
|
psrC
|
polysulfide reductase, subunit C
|
||
|
Position: -125
Score: 4.5 Sequence: TTAAGTGATCTTGGCCACAATA
Locus tag: Shewmr7_3355
Name: SO3967 Funciton: Molybdenum-binding periplasmic protein |
|||
|
SO3967
|
Molybdenum-binding periplasmic protein
|
||
|
Position: -271
Score: 4.5 Sequence: TAATGTTAGCCTCCTCACACTT
Locus tag: Shewmr7_2819
Name: Shewana3_2910 Funciton: putative membrane protein |
|||
|
Shewana3_2910
|
putative membrane protein
|
||
|
Position: -202
Score: 4 Sequence: ATTTGTTACCCACCTCTTATTT
Locus tag: Shewmr7_2680
Name: mtrF Funciton: decaheme cytochrome c MtrF |
|||
|
mtrF
|
decaheme cytochrome c MtrF
|
||
|
Position: -121
Score: 3.9 Sequence: TAGCTTGATCGAAAACACAGTT
Locus tag: Shewmr7_3101
Name: purT Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) |
|||
|
purT
|
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
|
||
|
Position: -193
Score: 4 Sequence: GTTTGTGATCGCCATCACTAAC
Locus tag: Shewmr7_2260
Name: hemB-1 Funciton: porphobilinogen synthase (EC 4.2.1.24) |
|||
|
hemB-1
|
porphobilinogen synthase (EC 4.2.1.24)
|
||
|
Position: -86
Score: 4.6 Sequence: TGCTTTGATTTACATCACAATT
Locus tag: Shewmr7_2028
Name: Sama_2599 Funciton: putative lipoprotein |
|||
|
Sama_2599
|
putative lipoprotein
|
||
|
Position: -94
Score: 4.3 Sequence: TTACATGATACGCTTCACAATG
Locus tag: Shewmr7_0443
Name: kefA Funciton: mechanosensitive ion channel |
|||
|
kefA
|
mechanosensitive ion channel
|
||
|
Position: -304
Score: 4.6 Sequence: TTTTGCGATCCGCCTCACAATC
Locus tag: Shewmr7_3799
Name: Shewana3_3924 Funciton: methyl-accepting chemotaxis protein |
|||
|
Shewana3_3924
|
methyl-accepting chemotaxis protein
|
||
|
Position: -295
Score: 4.4 Sequence: TTATGTGACAAAAATCTCAATG
Position: -172
Score: 4.3 Sequence: AAGTGAGAACAAGATCACACTT
Locus tag: Shewmr7_2574
Name: mtrD Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewmr7_2575
Name: mtrE Funciton: outer membrane protein, MtrE
Locus tag: Shewmr7_2576
Name: mtrF Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shewmr7_2577
Name: omcA Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA |
|||
|
mtrD
|
periplasmic decaheme cytochrome c, MtrD
|
||
|
mtrE
|
outer membrane protein, MtrE
|
||
|
mtrF
|
surface localized decaheme cytochrome c lipoprotein, MtrF
|
||
|
omcA
|
surface localized decaheme cytochrome c lipoprotein, OmcA
|
||
|
Position: -198
Score: 4.3 Sequence: CCCTGTGATCTAGCTCAAATTT
Locus tag: Shewmr7_0766
Name: SO3890 Funciton: methyl-accepting chemotaxis protein |
|||
|
SO3890
|
methyl-accepting chemotaxis protein
|
||
|
Position: -67
Score: 3.7 Sequence: AAATGTGTAAAACCACACAAAA
Locus tag: Shewmr7_0761
Name: omp35 Funciton: outer membrane porin |
|||
|
omp35
|
outer membrane porin
|
||
|
Position: -187
Score: 4.2 Sequence: AACATTGAACTAGATCACAATT
Position: -93
Score: 4.3 Sequence: TTAATTGACCTAGATCAAACTT
Locus tag: Shewmr7_0454
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -236
Score: 4.1 Sequence: TTTTGTTAAGCAGATCATGTTT
Locus tag: Shewmr7_3800
Name: SO4519 Funciton: sodium-dependent transporter |
|||
|
SO4519
|
sodium-dependent transporter
|
||
|
Position: -157
Score: 4.5 Sequence: ATTTGTGATGTGAATCATTGTT
Locus tag: Shewmr7_1648
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
|||
|
ydhD
|
Probable monothiol glutaredoxin ydhD
|
||
|
Position: -189
Score: 3.5 Sequence: TAGAAAGATCCAAGTCACACAT
Locus tag: Shewmr7_2578
Name: mtrC Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewmr7_2579
Name: mtrA Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewmr7_2580
Name: mtrB Funciton: outer membrane protein, MtrB |
|||
|
mtrC
|
surface localized decaheme cytochrome c lipoprotein, MtrC
|
||
|
mtrA
|
periplasmic decaheme cytochrome c, MtrA
|
||
|
mtrB
|
outer membrane protein, MtrB
|
||
|
Position: -328
Score: 3.8 Sequence: GAATGTGATCTGTCTCGGCATT
Position: -133
Score: 4.4 Sequence: TAATGTGCTCTAGCTCAGGTTT
Locus tag: Shewmr7_3542
Name: mccA Funciton: cytochrome c, putative |
|||
|
mccA
|
cytochrome c, putative
|
||
|
Position: -162
Score: 4.4 Sequence: TGGATTGATCCAGATCACAAAT
Locus tag: Shewmr7_2949
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaC
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -383
Score: 4.3 Sequence: TACTGTGATCCCGTTAACCCAA
Position: -217
Score: 3.9 Sequence: TAATGTGCGCAGGCACACATTG
Locus tag: Shewmr7_3241
Name: SO0939 Funciton: split-soret diheme cytochrome c
Locus tag: Shewmr7_3242
Name: null Funciton: hypothetical protein |
|||
|
SO0939
|
split-soret diheme cytochrome c
|
||
|
hypothetical protein
|
|||
|
Position: -308
Score: 3.8 Sequence: AATTGTGTAGTTATTCATATTC
Locus tag: Shewmr7_3419
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shewmr7_3418
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shewmr7_3417
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shewmr7_3416
Name: SO0620 Funciton: FIG008480: hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
FIG008480: hypothetical protein
|
||
|
Position: -171
Score: 4.5 Sequence: AATAGTGATAAAGATCGCGTTT
Locus tag: Shewmr7_1441
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -124
Score: 3.6 Sequence: CAAGGTGATCTCTCTCTAAGAT
Locus tag: Shewmr7_2914
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: Shewmr7_2913
Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|||
|
hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
|
||
|
hcr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
Position: -122
Score: 4 Sequence: GAAGGTGATACACCTCAAATAA
Locus tag: Shewmr7_0441
Name: SO4142 Funciton: cytochrome c family protein
Locus tag: Shewmr7_0440
Name: SO4143 Funciton: hypothetical protein
Locus tag: Shewmr7_0439
Name: SO4144 Funciton: octaheme tetrathionate reductase |
|||
|
SO4142
|
cytochrome c family protein
|
||
|
SO4143
|
hypothetical protein
|
||
|
SO4144
|
octaheme tetrathionate reductase
|
||
|
Position: -70
Score: 4.5 Sequence: TTTTGTAACTATGATCACACAA
Locus tag: Shewmr7_3056
Name: SO3553 Funciton: putative sulfate permease
Locus tag: Shewmr7_3057
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Shewmr7_3058
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Shewmr7_3059
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
|||
|
SO3553
|
putative sulfate permease
|
||
|
purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
||
|
purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
||
|
SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
||
|
Position: -255
Score: 4.4 Sequence: CTTTGTGATACACTGCACAAAG
Locus tag: Shewmr7_0017
Name: pepQ Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Shewmr7_0018
Name: SO0023 Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Shewmr7_0019
Name: trkH-1 Funciton: potassium uptake protein TrkH
Locus tag: Shewmr7_0020
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) |
|||
|
pepQ
|
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
|
||
|
SO0023
|
FIG000605: protein co-occurring with transport systems (COG1739)
|
||
|
trkH-1
|
potassium uptake protein TrkH
|
||
|
hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
|
||
|
Position: -184
Score: 4.4 Sequence: TTACATGATGCAGCGCACATTT
Locus tag: Shewmr7_2388
Name: cctA Funciton: cytochrome c3 |
|||
|
cctA
|
cytochrome c3
|
||
|
Position: -142
Score: 4.1 Sequence: AATTGTTAAGTATTTCATATTG
Locus tag: Shewmr7_0815
Name: SO3811 Funciton: lipoprotein, putative
Locus tag: Shewmr7_0814
Name: ppiA Funciton: peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Locus tag: Shewmr7_0813
Name: SO3813 Funciton: hypothetical protein
Locus tag: Shewmr7_0812
Name: ampG Funciton: AmpG permease |
|||
|
SO3811
|
lipoprotein, putative
|
||
|
ppiA
|
peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
|
||
|
SO3813
|
hypothetical protein
|
||
|
ampG
|
AmpG permease
|
||
|
Position: -317
Score: 4.2 Sequence: AGAAGTGATCTTGATCAATTTT
Locus tag: Shewmr7_3864
Name: SO4606 Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Shewmr7_3865
Name: SO4607 Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Shewmr7_3866
Name: coxG Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Shewmr7_3867
Name: SO4609 Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
|||
|
SO4606
|
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
|
||
|
SO4607
|
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
|
||
|
coxG
|
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
|
||
|
SO4609
|
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
|
||
|
Position: -309
Score: 3.9 Sequence: AAATGTGATCTGGATCATTGGA
Locus tag: Shewmr7_0763
Name: SO3895 Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL |
|||
|
SO3895
|
HesA/MoeB/ThiF family protein related to EC-YgdL
|
||
|
Position: -203
Score: 4.2 Sequence: TAGTGTGACTAGGGTCTCAGTA
Locus tag: Shewmr7_1310
Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Shewmr7_1311
Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB |
|||
|
cydA
|
cytochrome d ubiquinol oxidase, subunit I, CydA
|
||
|
cydB
|
cytochrome d ubiquinol oxidase, subunit II, CydB
|
||
|
Position: -278
Score: 4.8 Sequence: ATTTGTGACAAATTGCACATTA
Position: -205
Score: 4.1 Sequence: ATTCGTTAGGGAACTCACAGAT
Locus tag: Shewmr7_1219
Name: SO3406 Funciton: FIG024006: iron uptake protein
Locus tag: Shewmr7_1218
Name: SO3407 Funciton: FIG138928: iron-regulated membrane protein
Locus tag: Shewmr7_1217
Name: SO3408 Funciton: FIG016502: iron uptake protein |
|||
|
SO3406
|
FIG024006: iron uptake protein
|
||
|
SO3407
|
FIG138928: iron-regulated membrane protein
|
||
|
SO3408
|
FIG016502: iron uptake protein
|
||
|
Position: -263
Score: 4.1 Sequence: TCGAGTGACATAGATCACAGTT
Position: -181
Score: 4.2 Sequence: CAAAATGATCTAGATCATATTA
Locus tag: Shewmr7_2807
Name: lldP Funciton: L-lactate permease
Locus tag: Shewmr7_2808
Name: dldD Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
|||
|
lldP
|
L-lactate permease
|
||
|
dldD
|
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
|
||
|
Position: -91
Score: 4.3 Sequence: AACAATGATTCACATCACAAAT
Locus tag: Shewmr7_1647
Name: sodB Funciton: superoxide dismutase [Fe] (EC 1.15.1.1) |
|||
|
sodB
|
superoxide dismutase [Fe] (EC 1.15.1.1)
|
||
|
Position: -140
Score: 4.4 Sequence: TTTTGTGATGTTTCTCTACATA
Locus tag: Shewmr7_2536
Name: SO1821 Funciton: outer membrane porin, putative |
|||
|
SO1821
|
outer membrane porin, putative
|
||
|
Position: -72
Score: 4.8 Sequence: AATTGTGATCGCAATCAACAAA
Locus tag: Shewmr7_2223
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE2
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -46
Score: 4.3 Sequence: AAATTAGATCCATGTCACACAT
Locus tag: Shewmr7_0614
Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37) |
|||
|
mdh
|
malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -225
Score: 4.5 Sequence: TTAGGTGATTCATCTCAAAAAA
Locus tag: Shewmr7_3042
Name: rpsT Funciton: SSU ribosomal protein S20p |
|||
|
rpsT
|
SSU ribosomal protein S20p
|
||
|
Position: -205
Score: 4 Sequence: AAGTGTGAGCCAGATCTAACTC
Position: -91
Score: 4.6 Sequence: AATATTGATCCAAATCACGTTT
Locus tag: Shewmr7_0446
Name: SO4134 Funciton: Protein of unknown function DUF465 |
|||
|
SO4134
|
Protein of unknown function DUF465
|
||
|
Position: -318
Score: 4.5 Sequence: AAATGTAGTGTTGATCACATTT
Locus tag: Shewmr7_3850
Name: cymA Funciton: membrane anchored tetraheme cytochrome c, CymA |
|||
|
cymA
|
membrane anchored tetraheme cytochrome c, CymA
|
||
|
Position: -222
Score: 3.9 Sequence: TTTTGTGATTAGAATCTCAGCG
Locus tag: Shewmr7_0226
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shewmr7_0225
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shewmr7_0224
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shewmr7_0223
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shewmr7_0222
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
|||
|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
|
||
|
ccmC
|
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
Position: -142
Score: 5 Sequence: TTTTTTGATAAATCTCACATTT
Locus tag: Shewmr7_1221
Name: yfiA-1 Funciton: ribosomal subunit interface protein |
|||
|
yfiA-1
|
ribosomal subunit interface protein
|
||
|
Position: -202
Score: 4 Sequence: ATTTGTTACCCACCTCTTATTT
Locus tag: Shewmr7_2680
Name: mtrF Funciton: decaheme cytochrome c MtrF |
|||
|
mtrF
|
decaheme cytochrome c MtrF
|
||
|
Position: -234
Score: 4.8 Sequence: TTAAGTGATCTGGCTCACTTAA
Locus tag: Shewmr7_2445
Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26) |
|||
|
SO2753
|
prolyl endopeptidase (EC 3.4.21.26)
|
||
|
Position: -85
Score: 4.4 Sequence: GGATGTGACTTGCCTCACAATT
Locus tag: Shewmr7_1212
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_1213
Name: SO3412 Funciton: extracellular solute-binding proteins, family 3 protein
Locus tag: Shewmr7_1214
Name: SO3411 Funciton: tricorn protease homolog (EC 3.4.21.-) |
|||
|
hypothetical protein
|
|||
|
SO3412
|
extracellular solute-binding proteins, family 3 protein
|
||
|
SO3411
|
tricorn protease homolog (EC 3.4.21.-)
|
||
|
Position: -160
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Shewmr7_1471
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Shewmr7_1470
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: Shewmr7_1469
Name: null Funciton: hypothetical protein
Locus tag: Shewmr7_1468
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: Shewmr7_1467
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: Shewmr7_1466
Name: SO3095 Funciton: hypothetical protein |
|||
|
SO3090
|
MoxR-like ATPase in aerotolerance operon
|
||
|
SO3091
|
Conserved hypothetical protein
|
||
|
hypothetical protein
|
|||
|
SO3093
|
von Willebrand factor type A domain protein
|
||
|
SO3094
|
TPR domain protein in aerotolerance operon
|
||
|
SO3095
|
hypothetical protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |