Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella oneidensis MR-1

Properties
Regulator type: Transcription factor
TF locus tag: SO0624
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 286
- Operons 150
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -302
Score: 3.9
Sequence: AAGTATGAATCAGGTCACACTC
Position: -118
Score: 3.8
Sequence: TAACGAAATGCTTTTCACAGTA
Locus tag: SO0431
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
SO0431
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -244
Score: 4.2
Sequence: AAACGAGAGTTAAATCACACTT
Locus tag: SO3421
Name: SO3421
Funciton: b-type cytochrome, putative
SO3421
SO3421
b-type cytochrome, putative
Position: -222
Score: 4.2
Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: SO0263
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: SO0262
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: SO0261
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: SO0260
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: SO0259
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
SO0263
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
SO0262
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
SO0261
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
SO0260
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
SO0259
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -117
Score: 4.6
Sequence: TTTATTGATGTAATTCACAGAT
Locus tag: SO0936
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: SO0937
Name: null
Funciton: hypothetical protein
SO0936
cadC
transcriptional regulator-related protein
SO0937
hypothetical protein
Position: -129
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: SO1103
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: SO1104
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: SO1105
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: SO1106
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: SO1107
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: SO1108
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
SO1103
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
SO1104
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
SO1105
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
SO1106
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
SO1107
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
SO1108
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -317
Score: 4.2
Sequence: AGAAGTGATCTTGATCAATTTT
Locus tag: SO4606
Name: SO4606
Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: SO4607
Name: SO4607
Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: SO4608
Name: coxG
Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: SO4609
Name: SO4609
Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1)
SO4606
SO4606
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
SO4607
SO4607
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
SO4608
coxG
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
SO4609
SO4609
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -131
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: SO3089
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: SO3088
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
SO3089
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
SO3088
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -91
Score: 4.7
Sequence: AATATTGATCCAGATCACGTTT
Locus tag: SO4134
Name: SO4134
Funciton: Protein of unknown function DUF465
SO4134
SO4134
Protein of unknown function DUF465
Position: -177
Score: 4.1
Sequence: GTTAGTGATAGCGATCACAAAC
Locus tag: SO2586
Name: SO2586
Funciton: inactive homolog of metal-dependent proteases, putative molecular chaperone
Locus tag: SO2585
Name: SO2585
Funciton: hypothetical protein
Locus tag: SO2584
Name: SO2584
Funciton: Tlr1621 protein
SO2586
SO2586
inactive homolog of metal-dependent proteases, putative molecular chaperone
SO2585
SO2585
hypothetical protein
SO2584
SO2584
Tlr1621 protein
Position: -34
Score: 4.4
Sequence: ATACGTGATCTGACGCACATCA
Locus tag: SO0439
Name: SO0439
Funciton: hypothetical protein
SO0439
SO0439
hypothetical protein
Position: -152
Score: 4.1
Sequence: TTGTGTGATCATAGTTGCAAAA
Locus tag: SO3552
Name: SO3552
Funciton: Von Willebrand factor type A domain protein
Locus tag: SO3551
Name: SO3551
Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: SO3550
Name: null
Funciton: hypothetical protein
SO3552
SO3552
Von Willebrand factor type A domain protein
SO3551
SO3551
RNA polymerase sigma-70 factor, ECF subfamily
SO3550
hypothetical protein
Position: -109
Score: 4
Sequence: AAAATCGATTTTGCTCACACAA
Locus tag: SO1328
Name: SO1328
Funciton: transcriptional regulator, LysR family
SO1328
SO1328
transcriptional regulator, LysR family
Position: -136
Score: 4
Sequence: AACAGTGATGCTGATTAAATTA
Locus tag: SO3914
Name: SO3914
Funciton: ferrichrome-iron receptor
Locus tag: SO3913
Name: piuC
Funciton: iron-uptake factor PiuC
SO3914
SO3914
ferrichrome-iron receptor
SO3913
piuC
iron-uptake factor PiuC
Position: -257
Score: 4.1
Sequence: AGATGTGATCGGTTGCGCGAAT
Locus tag: SO3395
Name: SO3395
Funciton: hypothetical protein
SO3395
SO3395
hypothetical protein
Position: -130
Score: 4
Sequence: TTTGATGATCCACTTCAAACTA
Locus tag: SO4504
Name: null
Funciton: hypothetical protein
Locus tag: SO4505
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: SO4506
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: SO4507
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: SO4508
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: SO4509
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: SO4510
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: SO4511
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
SO4504
hypothetical protein
SO4505
SO4505
hypothetical protein probably related to Formate dehydrogenase function
SO4506
SO4506
iron-sulfur cluster-binding protein
SO4507
SO4507
putative formate dehydrogenase-specific chaperone
SO4508
SO4508
formate dehydrogenase subunit or accessory protein
SO4509
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
SO4510
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
SO4511
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -84
Score: 4.4
Sequence: TTATTTGCGCTACATCACAAAA
Locus tag: SO0355
Name: SO0355
Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: SO0354
Name: SO0354
Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
SO0355
SO0355
long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO0354
SO0354
inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
Position: -297
Score: 4.4
Sequence: CATTGTGAGTTGAGTCATATTT
Position: -189
Score: 4
Sequence: TAATGGGAGCGTCATCACACTC
Position: -57
Score: 4.1
Sequence: TAAAATGAACTAGATCAAAATA
Locus tag: SO1278
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
SO1278
SO1278
methyl-accepting chemotaxis protein
Position: -260
Score: 3.9
Sequence: TAATGTGATTGGTATAAACCTC
Position: -150
Score: 3.9
Sequence: AACTTTGATCCCGATCGACTAT
Locus tag: SO0849
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: SO0848
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: SO0847
Name: napG
Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: SO0846
Name: napH
Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: SO0845
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
SO0849
napD
periplasmic nitrate reductase component NapD
SO0848
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
SO0847
napG
ferredoxin-type protein NapG (periplasmic nitrate reductase)
SO0846
napH
polyferredoxin NapH (periplasmic nitrate reductase)
SO0845
napB
nitrate reductase cytochrome c550-type subunit
Position: -135
Score: 3.8
Sequence: GTATTTGAAGTAACTCACAAAG
Position: -94
Score: 4
Sequence: AGGTGTGACCTTTATCCCGATT
Locus tag: SO1415
Name: SO1415
Funciton: transcriptional regulator, TetR family
SO1415
SO1415
transcriptional regulator, TetR family
Position: -117
Score: 3.9
Sequence: AAGTGTTAGCTAACTCATAGAT
Locus tag: SO1419
Name: SO1419
Funciton: lipoprotein, putative
Locus tag: SO1420
Name: SO1420
Funciton: outer membrane porin, putative
SO1419
SO1419
lipoprotein, putative
SO1420
SO1420
outer membrane porin, putative
Position: -150
Score: 3.8
Sequence: AACTGTTAGCTTTATCACTCAA
Locus tag: SO1389
Name: SO1389
Funciton: ROK family protein, in a cluster with chitinase
SO1389
SO1389
ROK family protein, in a cluster with chitinase
Position: -232
Score: 4.1
Sequence: TTGAGTGATAAAGCTAACAGTT
Locus tag: SO1388
Name: SO1388
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
SO1388
SO1388
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -233
Score: 4.2
Sequence: GATATTGATACAAATCACATTT
Locus tag: SO4019
Name: SO4019
Funciton: DNA helicase
SO4019
SO4019
DNA helicase
Position: -135
Score: 3.9
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: SO1218
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SO1219
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: SO1221
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
SO1218
deoA
thymidine phosphorylase (EC 2.4.2.4)
SO1219
deoB
phosphopentomutase (EC 5.4.2.7)
SO1221
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -132
Score: 3.7
Sequence: CACTATGATCTGCTTCTAATTT
Position: -103
Score: 3.7
Sequence: TAATGAGCCCCGCTTCAAACTT
Locus tag: SO0608
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: SO0609
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: SO0610
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: SO0611
Name: sspA
Funciton: stringent starvation protein A
Locus tag: SO0612
Name: sspB
Funciton: stringent starvation protein B
SO0608
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
SO0609
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
SO0610
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
SO0611
sspA
stringent starvation protein A
SO0612
sspB
stringent starvation protein B
Position: -75
Score: 4
Sequence: TTCCTTGATTTAGCTCACACTC
Locus tag: SO1613
Name: null
Funciton: hypothetical protein
SO1613
hypothetical protein
Position: -199
Score: 4.1
Sequence: AAATGTGATCTACACCTAAATG
Locus tag: SO2629
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
SO2629
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -161
Score: 4.1
Sequence: TTTCGTGAGCTAGATTAGATAT
Locus tag: SO0141
Name: SO0141
Funciton: sensory box/GGDEF family protein
SO0141
SO0141
sensory box/GGDEF family protein
Position: -96
Score: 4.5
Sequence: AAGTGTGATACTTGCCACAAAA
Locus tag: SO1689
Name: SO1689
Funciton: lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
SO1689
SO1689
lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
Position: -63
Score: 3.8
Sequence: TATTTTGATATTGAATAAAATA
Position: -34
Score: 3.8
Sequence: TGATGTGCCAGTGTTCAAATAG
Position: -2
Score: 3.7
Sequence: TTATGTTATTATTGCCGCAAAA
Locus tag: SO2591
Name: ycbW
Funciton: probable membrane protein YcbW
SO2591
ycbW
probable membrane protein YcbW
Position: -70
Score: 4.5
Sequence: TTATGAGAGCAGAATCACATTT
Locus tag: SO2797
Name: SO2797
Funciton: glutaredoxin
SO2797
SO2797
glutaredoxin
Position: -150
Score: 3.8
Sequence: CTCAATGATCCAGCTCACACTT
Locus tag: SO0162
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
SO0162
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -66
Score: 4
Sequence: TTACGTGACCTATAGCACGTCT
Locus tag: SO3855
Name: sfcA
Funciton: NAD-dependent malic enzyme (EC 1.1.1.38)
SO3855
sfcA
NAD-dependent malic enzyme (EC 1.1.1.38)
Position: -83
Score: 3.9
Sequence: TCTTGTGAGCGAGTTCACGCCT
Locus tag: SO3987
Name: SO3987
Funciton: hypothetical protein
SO3987
SO3987
hypothetical protein
Position: -129
Score: 3.9
Sequence: AATCGTGATCACTATGGCAAAA
Locus tag: SO4619
Name: yhgI
Funciton: NfuA Fe-S protein maturation
SO4619
yhgI
NfuA Fe-S protein maturation
Position: -318
Score: 4.4
Sequence: TATTGTAATTTAGTCAACATTT
Position: -132
Score: 4.3
Sequence: AAATGTGACCTAATTGACGTAT
Locus tag: SO4118
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: SO4116
Name: mshH
Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: SO4114.2
Name: mshI
Funciton: MSHA biogenesis protein MshI
SO4118
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)
SO4116
mshH
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
SO4114.2
mshI
MSHA biogenesis protein MshI
Position: -137
Score: 4.2
Sequence: CAATGTGAGCGGCTTCAAAATG
Locus tag: SO3776
Name: SO3776
Funciton: hypothetical protein
SO3776
SO3776
hypothetical protein
Position: -95
Score: 4.4
Sequence: AAGTGTGATCAAGATCACGTGT
Locus tag: SO2112
Name: rplY
Funciton: LSU ribosomal protein L25p
SO2112
rplY
LSU ribosomal protein L25p
Position: -119
Score: 4.3
Sequence: TAGAGTGAAATTAATCACAGTT
Locus tag: SO1065
Name: fkpA
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
SO1065
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Position: -146
Score: 4.4
Sequence: TATAGTGTTGTCCGTCACATTT
Locus tag: SO3774
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
SO3774
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -53
Score: 4.5
Sequence: TTTTGTTATACTCGTCACCTTT
Locus tag: SO3797
Name: SO3797
Funciton: probable collagenase (EC 3.4.24.3)
SO3797
SO3797
probable collagenase (EC 3.4.24.3)
Position: -145
Score: 4.7
Sequence: TTATGCGATATTGTTCTCATTT
Locus tag: SO0862
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: SO0861
Name: SO0861
Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
SO0862
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
SO0861
SO0861
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553
Funciton: putative sulfate permease
SO3553
SO3553
putative sulfate permease
Position: -151
Score: 4.3
Sequence: CTGTGTGATCAGGATCTCAGTT
Position: -12
Score: 3.7
Sequence: TTGAGTGATCCCATGCAACAAT
Locus tag: SO1788
Name: miaE
Funciton: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
SO1788
miaE
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
Position: -149
Score: 3.9
Sequence: AAGTGTGAACAACAACACTATT
Position: -126
Score: 4.1
Sequence: CATTTTGATCTAGCGCAAACTT
Locus tag: SO3980
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
SO3980
nrfA
cytochrome c552 precursor (EC 1.7.2.2)
Position: -109
Score: 3.8
Sequence: TTGCGTGATTTTGTGCAAGCAT
Locus tag: SO3682
Name: null
Funciton: hypothetical protein
Locus tag: SO3681
Name: SO3681
Funciton: universal stress protein family
Locus tag: SO3680
Name: Shewana3_3248
Funciton: UspA domain-containing protein
SO3682
hypothetical protein
SO3681
SO3681
universal stress protein family
SO3680
Shewana3_3248
UspA domain-containing protein
Position: -79
Score: 4.8
Sequence: ACACGTGATCTTGATCACACTT
Locus tag: SO2111
Name: SO2111
Funciton: hypothetical protein
SO2111
SO2111
hypothetical protein
Position: -91
Score: 3.8
Sequence: ATCTATGAGTTAGCTAACACTT
Locus tag: SO1418
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
SO1418
apbE
thiamin biosynthesis lipoprotein ApbE
Position: -319
Score: 5.1
Sequence: AAGTGTGATTAAAATCACACTT
Locus tag: SO2427
Name: null
Funciton: TonB-dependent receptor
SO2427
TonB-dependent receptor
Position: -166
Score: 4.5
Sequence: AATAGTGATAAAGATCGCGTTT
Locus tag: SO3119
Name: null
Funciton: hypothetical protein
SO3119
hypothetical protein
Position: -220
Score: 3.8
Sequence: TTGGGTGAGCACTGTCACAGAT
Locus tag: SO4452
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: SO4451
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: SO4450
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: SO4449
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: SO4448
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: SO4447
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: SO4446
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
SO4452
moaA
molybdenum cofactor biosynthesis protein MoaA
SO4451
moaC
molybdenum cofactor biosynthesis protein MoaC
SO4450
moaD
molybdenum cofactor biosynthesis protein MoaD
SO4449
moaE
molybdenum cofactor biosynthesis protein MoaE
SO4448
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
SO4447
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
SO4446
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -186
Score: 4.3
Sequence: AAACGCGATCTTTATCACTATT
Locus tag: SO3120
Name: SO3120
Funciton: oxidoreductase, Gfo/Idh/MocA family
SO3120
SO3120
oxidoreductase, Gfo/Idh/MocA family
Position: -234
Score: 4
Sequence: CAATTTGATATGGTTCCAATAA
Position: -125
Score: 4.1
Sequence: TGCTGAGATTCTAATCACAAAA
Locus tag: SO0264
Name: scyA
Funciton: cytochrome c-type protein
SO0264
scyA
cytochrome c-type protein
Position: -266
Score: 4.5
Sequence: ATGTGTGACATGGATCTAATTT
Locus tag: SO0769
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
SO0769
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -95
Score: 4.3
Sequence: TCTTGTGAATTGAGTCACATAG
Locus tag: SO2806
Name: SO2806
Funciton: hypothetical protein
SO2806
SO2806
hypothetical protein
Position: -141
Score: 4.1
Sequence: GAGTGTGACCTGATTCATACTT
Locus tag: SO0432
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
SO0432
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -105
Score: 4.8
Sequence: TATTGTGAGTAAGTTCGCAAAT
Locus tag: SO2858
Name: SO2858
Funciton: hypothetical protein
Locus tag: SO2857
Name: SO2857
Funciton: sodium solute symporter family protein
Locus tag: SO2856
Name: SO2856
Funciton: predicted signal-transduction protein containing cAMP-binding and CBS domains
Locus tag: SO2855
Name: SO2855
Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7)
Locus tag: SO2854
Name: null
Funciton: hypothetical protein
SO2858
SO2858
hypothetical protein
SO2857
SO2857
sodium solute symporter family protein
SO2856
SO2856
predicted signal-transduction protein containing cAMP-binding and CBS domains
SO2855
SO2855
DNA polymerase III epsilon subunit (EC 2.7.7.7)
SO2854
hypothetical protein
Position: -162
Score: 4.3
Sequence: TTACATGATACGCTTCACAATG
Locus tag: SO4139
Name: SO4139
Funciton: tetratricopeptide repeat family protein
SO4139
SO4139
tetratricopeptide repeat family protein
Position: -203
Score: 4.2
Sequence: TAGTGTGACTAGGGTCTCAGTA
Locus tag: SO3286
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: SO3285
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
SO3286
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
SO3285
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -174
Score: 3.7
Sequence: AAGTTTGCGCTAGATCAAAATG
Position: -151
Score: 4.5
Sequence: AATAGTGTTGTTGTTCACACTT
Locus tag: SO3981
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: SO3982
Name: narP
Funciton: Nitrate/nitrite response regulator protein
SO3981
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
SO3982
narP
Nitrate/nitrite response regulator protein
Position: -92
Score: 4.1
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: SO4133
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
SO4133
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -141
Score: 4
Sequence: TTTTGTGATTTAGCGCATAACG
Locus tag: SO0544
Name: SO0544
Funciton: sensory box histidine kinase
Locus tag: SO0544.1
Name: SO0544.1
Funciton: response regulator receiver protein
SO0544
SO0544
sensory box histidine kinase
SO0544.1
SO0544.1
response regulator receiver protein
Position: -192
Score: 3.7
Sequence: CGTTATGCGCTAAATCACAAAA
Locus tag: SO0543
Name: SO0543
Funciton: hypothetical protein
SO0543
SO0543
hypothetical protein
Position: -225
Score: 4.2
Sequence: ATTTAAGACCAATATCACATTT
Locus tag: SO2757
Name: SO2757
Funciton: Histidine permease YuiF
SO2757
SO2757
Histidine permease YuiF
Position: -153
Score: 4
Sequence: CATAGAGATTTTTGTCACATAA
Locus tag: SO1783
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: SO1784
Name: feoB
Funciton: Ferrous iron transport protein B
SO1783
feoA
Ferrous iron transport protein A
SO1784
feoB
Ferrous iron transport protein B
Position: -267
Score: 4.2
Sequence: TTTAGTGATATTAGTCAACTAA
Locus tag: SO0625
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
SO0625
sel1
Sel1 domain protein repeat-containing protein precursor
Position: -82
Score: 4.1
Sequence: AAACGCGAACTAACTCGCATTT
Locus tag: SO2791
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
SO2791
cdd
cytidine deaminase (EC 3.5.4.5)
Position: -149
Score: 4.7
Sequence: ATTCGTGATATTGCTCACTATT
Locus tag: SO1538
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
SO1538
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -91
Score: 5
Sequence: AAGTGTGATGGACCTCTCATTT
Locus tag: SO4312
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
SO4312
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -184
Score: 4.4
Sequence: TTACATGATGCAGCGCACATTT
Locus tag: SO2727
Name: cctA
Funciton: cytochrome c3
SO2727
cctA
cytochrome c3
Position: -96
Score: 4.7
Sequence: TAATGTGATCGGGGTAATATTT
Locus tag: SO4667
Name: engB
Funciton: GTP-binding protein EngB
SO4667
engB
GTP-binding protein EngB
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATTA
Locus tag: SO4666
Name: cytcB
Funciton: Cytochrome c4
SO4666
cytcB
Cytochrome c4
Position: -122
Score: 4.5
Sequence: TGGCGTGATCCAATTCACCTTT
Position: -82
Score: 4.1
Sequence: TATTGTTAGTCACGTAACAAAA
Locus tag: SO1410
Name: SO1410
Funciton: conserved domain protein
SO1410
SO1410
conserved domain protein
Position: -69
Score: 3.7
Sequence: AATTGTGCATTAGTTAATCTAT
Position: -9
Score: 4.9
Sequence: TAATTTGATATGTATCATATAA
Locus tag: SO4154
Name: SO4154
Funciton: transcriptional regulator, LysR family
SO4154
SO4154
transcriptional regulator, LysR family
Position: -278
Score: 4.3
Sequence: CAATGTGATTGCTATCAACATA
Locus tag: SO0935
Name: nhaD
Funciton: Na+/H+ antiporter NhaD type
SO0935
nhaD
Na+/H+ antiporter NhaD type
Position: -113
Score: 4.7
Sequence: TATTGTGATCAGTATCAAACAC
Locus tag: SO0426
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
SO0426
lpdA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -68
Score: 5.1
Sequence: AAGTGTGATCTATCTTACATTT
Locus tag: SO1162
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: SO1161
Name: lipA
Funciton: Lipoate synthase
SO1162
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
SO1161
lipA
Lipoate synthase
Position: -248
Score: 3.7
Sequence: TGTTGTTTTTTTGCTCTCAATT
Position: -190
Score: 3.5
Sequence: TAGAAAGATCCAAGTCACACAT
Locus tag: SO1778
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: SO1777
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: SO1776
Name: mtrB
Funciton: outer membrane protein, MtrB
SO1778
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
SO1777
mtrA
periplasmic decaheme cytochrome c, MtrA
SO1776
mtrB
outer membrane protein, MtrB
Position: -225
Score: 4.5
Sequence: TTAGGTGATTCATCTCAAAAAA
Locus tag: SO3537
Name: rpsT
Funciton: SSU ribosomal protein S20p
SO3537
rpsT
SSU ribosomal protein S20p
Position: -165
Score: 3.7
Sequence: TAAGGTGAGACTGCGCAAAATA
Locus tag: SO4003
Name: SO4003
Funciton: response regulator
SO4003
SO4003
response regulator
Position: -97
Score: 4.1
Sequence: TTTTGTGCGCACCTTCATAAAT
Locus tag: SO0324
Name: ygbA
Funciton: nitrosative stress induced protein
SO0324
ygbA
nitrosative stress induced protein
Position: -96
Score: 4.2
Sequence: CATTGTGAAGCGTATCATGTAA
Locus tag: SO4138
Name: SO4138
Funciton: hypothetical protein
SO4138
SO4138
hypothetical protein
Position: -105
Score: 4.6
Sequence: AAATGTGATGTAGCCCAAAAAG
Locus tag: SO2222
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
SO2222
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553
Funciton: putative sulfate permease
Locus tag: SO3554
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: SO3555
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: SO3556
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
SO3553
SO3553
putative sulfate permease
SO3554
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
SO3555
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
SO3556
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -154
Score: 4.5
Sequence: AAAAGTGAGCCAGTTCTCAATT
Locus tag: SO4700
Name: null
Funciton: hypothetical protein
SO4700
hypothetical protein
Position: -79
Score: 3.9
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0397
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: SO0398
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SO0399
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
SO0397
fdrC
fumarate reductase cytochrome b subunit
SO0398
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
SO0399
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -136
Score: 4.2
Sequence: AATTGAGAACTGGCTCACTTTT
Locus tag: SO4699
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
SO4699
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553
Funciton: putative sulfate permease
Locus tag: SO3554
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: SO3555
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: SO3556
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
SO3553
SO3553
putative sulfate permease
SO3554
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
SO3555
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
SO3556
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -246
Score: 4.3
Sequence: TAATGTGAGCGAAGGCACGATA
Locus tag: SO0940
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: SO0941
Name: SO0941
Funciton: hypothetical protein
SO0940
cadC
transcriptional regulator-related protein
SO0941
SO0941
hypothetical protein
Position: -265
Score: 4.1
Sequence: ATTATTGATGCATATCAAGAAT
Locus tag: SO2100
Name: resA
Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: SO2101
Name: SO2101
Funciton: lipoprotein, putative
Locus tag: SO2102
Name: null
Funciton: hypothetical protein
Locus tag: SO2103
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
Locus tag: SO2104
Name: SO2104
Funciton: DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
Locus tag: SO2105
Name: SO2105
Funciton: Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
SO2100
resA
C-type cytochrome biogenesis protein ResA (thioredoxin)
SO2101
SO2101
lipoprotein, putative
SO2102
hypothetical protein
SO2103
apbE
thiamin biosynthesis lipoprotein ApbE
SO2104
SO2104
DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
SO2105
SO2105
Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
Position: -155
Score: 5.1
Sequence: TTATGTGATGATGATCAAAATT
Locus tag: SO2581
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
SO2581
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -70
Score: 4.7
Sequence: TTTTGTGATCTTCGTCACTGTA
Locus tag: SO2010
Name: null
Funciton: hypothetical protein
SO2010
hypothetical protein
Position: -92
Score: 3.8
Sequence: AATTGATAAGAAGATCACAGTA
Locus tag: SO1963
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
SO1963
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -102
Score: 4.4
Sequence: TATTTTGACTCAAGTCAAAATT
Locus tag: SO0572
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
SO0572
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)
Position: -183
Score: 4
Sequence: AAGTGTTACACCTATCCCATAT
Locus tag: SO3699.1
Name: SO3699.1
Funciton: hypothetical protein
SO3699.1
SO3699.1
hypothetical protein
Position: -199
Score: 4.1
Sequence: TTATGTGATTTTCACAACAACA
Position: -157
Score: 3.8
Sequence: AATTGTAAATTTTTGCATATAT
Locus tag: SO4131
Name: SO4131
Funciton: nucleoside-binding outer membrane protein
SO4131
SO4131
nucleoside-binding outer membrane protein
Position: -151
Score: 4.1
Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: SO0096
Name: hutC
Funciton: histidine utilization repressor
Locus tag: SO0097
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: SO0098
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
SO0096
hutC
histidine utilization repressor
SO0097
hutU
urocanate hydratase (EC 4.2.1.49)
SO0098
hutH
histidine ammonia-lyase (EC 4.3.1.3)
Position: -191
Score: 4.4
Sequence: TTTATTGATCAGCATCGCATTT
Locus tag: SO3780
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: SO3779
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: SO3778
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
SO3780
cydD
Transport ATP-binding protein CydD
SO3779
cydC
Transport ATP-binding protein CydC
SO3778
cyaB
adenylate cyclase CyaB, putative
Position: -174
Score: 3.5
Sequence: TTAGTTGACTAATATCACTAAA
Locus tag: SO0624
Name: crp
Funciton: Cyclic AMP receptor protein Crp
SO0624
crp
Cyclic AMP receptor protein Crp
Position: -105
Score: 4
Sequence: ATTCTTGATATGCATCAATAAT
Locus tag: SO2099
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: SO2096
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: SO2095
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: SO2094
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
SO2099
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
SO2098
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
SO2097
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
SO2096
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
SO2095
hyaE
NiFe hydrogenase assembly chaperone, HyaE
SO2094
hyaF
NiFe hydrogenase assembly protein, HypF
Position: -207
Score: 4.4
Sequence: ATTTGTGAGCTAGTTAGAATTA
Locus tag: SO4570
Name: SO4570
Funciton: conserved domain protein
Locus tag: SO4568
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
SO4570
SO4570
conserved domain protein
SO4568
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD
Position: -148
Score: 4.4
Sequence: TACTGTGATCTTCTTATCAATT
Locus tag: SO1965
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
SO1965
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -144
Score: 4
Sequence: TTTTGTGATCATCTTCTAAGAG
Position: -79
Score: 3.9
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0396
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0397
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0398
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SO0399
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
SO0396
frdC1
Fumarate reductase cytochrome b subunit
SO0397
fdrC2
Fumarate reductase cytochrome b subunit
SO0398
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
SO0399
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -173
Score: 4.3
Sequence: TTTTTTGACATGGCTCAAGTAT
Position: -125
Score: 4.1
Sequence: AAATGTGAAGGATAACGCATTG
Locus tag: SO2364
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: SO2363
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: SO2362
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: SO2361
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
SO2364
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
SO2363
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
SO2362
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
SO2361
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -202
Score: 4.4
Sequence: AAAAGTGATTTTCGTCACTAAA
Locus tag: SO4232
Name: SO4232
Funciton: long-chain fatty acid transport protein
SO4232
SO4232
long-chain fatty acid transport protein
Position: -75
Score: 4.5
Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: SO1666
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: SO1667
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
SO1666
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
SO1667
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -161
Score: 4.4
Sequence: TAGCGTGATTTGGATCTCAATG
Position: -110
Score: 4.4
Sequence: AATTTTGATTTGGATCAATAAT
Locus tag: SO1673
Name: ompW
Funciton: outer membrane protein W precursor
SO1673
ompW
outer membrane protein W precursor
Position: -200
Score: 5.1
Sequence: AAATGTGATTTTGTTCACGCTA
Locus tag: SO1670
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: SO1671
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
SO1670
fahA
Fumarylacetoacetate hydrolase family protein
SO1671
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -210
Score: 4.1
Sequence: CTTTGTGCAGTGTATCACAAAG
Locus tag: SO0021
Name: fadB
Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: SO0020
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
SO0021
fadB
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
SO0020
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -56
Score: 4.4
Sequence: AACTGTGATTAATTTCACTCTA
Locus tag: SO1064
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: SO1063
Name: slyX
Funciton: protein SlyX
Locus tag: SO1062
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: SO1061
Name: SO1061
Funciton: TPR domain protein
Locus tag: SO1060
Name: spaP
Funciton: Putative lipoprotein
Locus tag: SO1059
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
SO1064
SO1064
FOG: WD40 repeat
SO1063
slyX
protein SlyX
SO1062
def-2
peptide deformylase (EC 3.5.1.88)
SO1061
SO1061
TPR domain protein
SO1060
spaP
Putative lipoprotein
SO1059
SO1059
membrane alanine aminopeptidase N (EC 3.4.11.2)
Position: -78
Score: 4.7
Sequence: AAGTGTGATTTAACTCTCGTTT
Locus tag: SO3422
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
SO3422
yfiA-2
Ribosome hibernation protein YfiA
Position: -149
Score: 4.2
Sequence: AACTGAGATCCTGATCACACAG
Locus tag: SO1787
Name: SO1787
Funciton: probable membrane protein YPO2362
SO1787
SO1787
probable membrane protein YPO2362
Position: -180
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: SO0442
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: SO0441
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
SO0442
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
SO0441
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -161
Score: 3.8
Sequence: TAGCTTGATCAAAAACACAGTT
Locus tag: SO3613
Name: purT
Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
SO3613
purT
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Position: -197
Score: 4
Sequence: GTTTGTGATCGCTATCACTAAC
Locus tag: SO2587
Name: hemB-1
Funciton: porphobilinogen synthase (EC 4.2.1.24)
SO2587
hemB-1
porphobilinogen synthase (EC 4.2.1.24)
Position: -118
Score: 4.6
Sequence: AAAAGTGATCAAGCTCAAACAT
Locus tag: SO1001
Name: chaA
Funciton: calcium/proton antiporter
SO1001
chaA
calcium/proton antiporter
Position: -49
Score: 4.5
Sequence: TTTTTTGAGATGAATCACCTAA
Locus tag: SO3534
Name: mviN
Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: SO3533
Name: ribF
Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: SO3532
Name: ileS
Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: SO3531
Name: lspA
Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: SO3530
Name: fkbP-2
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: SO3529
Name: lytB
Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: SO3528
Name: pilV
Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: SO3527
Name: pilW
Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: SO3526
Name: pilX
Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: SO3525
Name: pilY1
Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: SO3524
Name: pilE
Funciton: type IV pilus biogenesis protein PilE
SO3534
mviN
proposed peptidoglycan lipid II flippase MurJ
SO3533
ribF
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
SO3532
ileS
isoleucyl-tRNA synthetase (EC 6.1.1.5)
SO3531
lspA
lipoprotein signal peptidase (EC 3.4.23.36)
SO3530
fkbP-2
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
SO3529
lytB
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
SO3528
pilV
type IV fimbrial biogenesis protein PilV
SO3527
pilW
type IV fimbrial biogenesis protein PilW
SO3526
pilX
type IV fimbrial biogenesis protein PilX
SO3525
pilY1
type IV fimbrial biogenesis protein PilY1
SO3524
pilE
type IV pilus biogenesis protein PilE
Position: -294
Score: 4.3
Sequence: AATAGTGATTTTTATTGCAAAT
Locus tag: SO1326
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
SO1326
SO1326
COG1242: Predicted Fe-S oxidoreductase
Position: -339
Score: 3.8
Sequence: TTATGTGACAAAAATCTCTATG
Locus tag: SO1782
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: SO1781
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: SO1780
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: SO1779
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
SO1782
mtrD
periplasmic decaheme cytochrome c, MtrD
SO1781
mtrE
outer membrane protein, MtrE
SO1780
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
SO1779
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -67
Score: 4.1
Sequence: AAATGTGTTAAACCACACAAAA
Locus tag: SO3896
Name: omp35
Funciton: outer membrane porin
SO3896
omp35
outer membrane porin
Position: -194
Score: 4.4
Sequence: TTTGTTGATTGCGATCACAATT
Locus tag: SO2535
Name: SO2535
Funciton: Predicted glutamine amidotransferase
SO2535
SO2535
Predicted glutamine amidotransferase
Position: -196
Score: 4.6
Sequence: CCATGTGATCTGGTTCAAATTT
Locus tag: SO3890
Name: SO3890
Funciton: methyl-accepting chemotaxis protein
SO3890
SO3890
methyl-accepting chemotaxis protein
Position: -95
Score: 4.2
Sequence: AATTTGGATGCAGAACACATTT
Locus tag: SO3542
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
SO3542
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -92
Score: 4.1
Sequence: TTAATTGACCTAAATCAAACTT
Locus tag: SO4126
Name: null
Funciton: hypothetical protein
SO4126
hypothetical protein
Position: -157
Score: 4.5
Sequence: ATTTGTGATGTGAATCATTGTT
Locus tag: SO2880
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
SO2880
ydhD
Probable monothiol glutaredoxin ydhD
Position: -162
Score: 4.7
Sequence: TGTATTGATCCAGATCACAAAT
Locus tag: SO1329
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
SO1329
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -142
Score: 4.7
Sequence: TTCTTTGATAGGTCTCACATTT
Locus tag: SO3403
Name: yfiA-1
Funciton: ribosomal subunit interface protein
SO3403
yfiA-1
ribosomal subunit interface protein
Position: -172
Score: 3.9
Sequence: GATTGTGCTCATGTTAACACTT
Position: -132
Score: 4.5
Sequence: AAATGAGAGGTCCATCACACTT
Locus tag: SO4313
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: SO4314
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: SO4315
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: SO4316
Name: hemY
Funciton: HemY domain-containing protein
SO4313
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
SO4314
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
SO4315
hemX
Homolog of E. coli HemX protein
SO4316
hemY
HemY domain-containing protein
Position: -164
Score: 4.9
Sequence: AATTTTGATCTGTATCACGCAA
Locus tag: SO4743
Name: SO4743
Funciton: ferrichrome-iron receptor
Locus tag: SO4742
Name: deoR
Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: SO4741
Name: glmS
Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
SO4743
SO4743
ferrichrome-iron receptor
SO4742
deoR
transcriptional regulator of glmS gene, DeoR family
SO4741
glmS
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Position: -214
Score: 4.1
Sequence: TTTTGTTAAGCAGATCATGTTT
Locus tag: SO4519
Name: SO4519
Funciton: sodium-dependent transporter
SO4519
SO4519
sodium-dependent transporter
Position: -382
Score: 4.3
Sequence: TACTGTGATCCCGTTAACCCAA
Position: -217
Score: 4.6
Sequence: TATCGTGCCTTCGCTCACATTA
Locus tag: SO0939
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: SO0938
Name: null
Funciton: hypothetical protein
SO0939
SO0939
split-soret diheme cytochrome c
SO0938
hypothetical protein
Position: -142
Score: 4
Sequence: AACTGGTATTTTGATCACAATT
Locus tag: SO0617
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: SO0618
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: SO0619
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: SO0620
Name: SO0620
Funciton: FIG008480: hypothetical protein
SO0617
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
SO0618
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
SO0619
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
SO0620
SO0620
FIG008480: hypothetical protein
Position: -124
Score: 4.2
Sequence: TAAAGTGATCTTTCTCTAAGAT
Locus tag: SO1363
Name: hcp
Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: SO1364
Name: hcr
Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
SO1363
hcp
Hydroxylamine reductase (EC 1.7.-.-)
SO1364
hcr
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Position: -220
Score: 4.3
Sequence: CTTTGTGAGTTACTTCAAATAC
Locus tag: SO1414
Name: SO1414
Funciton: flavocytochrome c flavin subunit
Locus tag: SO1413
Name: SO1413
Funciton: flavocytochrome c heme subunit
SO1414
SO1414
flavocytochrome c flavin subunit
SO1413
SO1413
flavocytochrome c heme subunit
Position: -121
Score: 3.9
Sequence: GAAAGTGACACACCTCAAATAA
Locus tag: SO4142
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: SO4143
Name: SO4143
Funciton: hypothetical protein
Locus tag: SO4144
Name: SO4144
Funciton: octaheme tetrathionate reductase
SO4142
SO4142
cytochrome c family protein
SO4143
SO4143
hypothetical protein
SO4144
SO4144
octaheme tetrathionate reductase
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATTA
Locus tag: SO4666
Name: cytcB
Funciton: diheme cytochrome c4
SO4666
cytcB
diheme cytochrome c4
Position: -237
Score: 4.4
Sequence: CTTTGTGATACACTGCACAAAG
Locus tag: SO0022
Name: pepQ
Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: SO0023
Name: SO0023
Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: SO0024
Name: trkH-1
Funciton: potassium uptake protein TrkH
Locus tag: SO0025
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
SO0022
pepQ
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
SO0023
SO0023
FIG000605: protein co-occurring with transport systems (COG1739)
SO0024
trkH-1
potassium uptake protein TrkH
SO0025
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Position: -307
Score: 4
Sequence: AAATGTCGCCTTGATCACATTT
Locus tag: SO4591
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
SO4591
cymA
membrane anchored tetraheme cytochrome c, CymA
Position: -130
Score: 4.3
Sequence: TAATGTGCTCTAGCGCAGATTT
Position: -111
Score: 3.8
Sequence: TTTTTTGCTTTTTCTCTCATTC
Locus tag: SO0479
Name: mccA
Funciton: cytochrome c, putative
SO0479
mccA
cytochrome c, putative
Position: -298
Score: 3.8
Sequence: ATTTGTGCACAGCATCAACAAA
Locus tag: SO3406
Name: SO3406
Funciton: FIG024006: iron uptake protein
Locus tag: SO3407
Name: SO3407
Funciton: FIG138928: iron-regulated membrane protein
Locus tag: SO3408
Name: SO3408
Funciton: FIG016502: iron uptake protein
SO3406
SO3406
FIG024006: iron uptake protein
SO3407
SO3407
FIG138928: iron-regulated membrane protein
SO3408
SO3408
FIG016502: iron uptake protein
Position: -158
Score: 4.4
Sequence: AAATGTGATTTGTATCAATATC
Locus tag: SO4018
Name: SO4018
Funciton: hypothetical protein
SO4018
SO4018
hypothetical protein
Position: -262
Score: 4.6
Sequence: TTAAGTGACACCGATCACAGTT
Position: -180
Score: 4.2
Sequence: CAAAATGATCTAGATCATATAA
Locus tag: SO1522
Name: lldP
Funciton: L-lactate permease
Locus tag: SO1521
Name: dldD
Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
SO1522
lldP
L-lactate permease
SO1521
dldD
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -86
Score: 4
Sequence: TATAGTGACTTCAATCACAACC
Locus tag: SO4349
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
SO4349
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -47
Score: 4.3
Sequence: AAATTAGATCCATGTCACACAT
Locus tag: SO0770
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
SO0770
mdh
malate dehydrogenase (EC 1.1.1.37)
Position: -91
Score: 4.3
Sequence: AACAATGATTCACATCACAAAT
Locus tag: SO2881
Name: sodB
Funciton: superoxide dismutase [Fe] (EC 1.15.1.1)
SO2881
sodB
superoxide dismutase [Fe] (EC 1.15.1.1)
Position: -72
Score: 4.8
Sequence: AATTGTGATCGCAATCAACAAA
Locus tag: SO2536
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
SO2536
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -235
Score: 4.7
Sequence: TTAAGTGATCTGCCTCACTTAA
Locus tag: SO2753
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
SO2753
SO2753
prolyl endopeptidase (EC 3.4.21.26)
Position: -172
Score: 4.4
Sequence: AAACATGATCTGCTTAACAAAA
Locus tag: SO4520
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
SO4520
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -165
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: SO3090
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: SO3091
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: SO3092
Name: null
Funciton: hypothetical protein
Locus tag: SO3093
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: SO3094
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: SO3095
Name: SO3095
Funciton: hypothetical protein
SO3090
SO3090
MoxR-like ATPase in aerotolerance operon
SO3091
SO3091
Conserved hypothetical protein
SO3092
hypothetical protein
SO3093
SO3093
von Willebrand factor type A domain protein
SO3094
SO3094
TPR domain protein in aerotolerance operon
SO3095
SO3095
hypothetical protein
Position: -171
Score: 4.3
Sequence: ATCTGTGACAGTGCTCACCCAA
Locus tag: SO4453
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
SO4453
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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