Regulon of Crp in Shewanella oneidensis MR-1
| Regulator type: | Transcription factor |
| TF locus tag: | SO0624 |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 286 |
| - Operons | 150 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -302
Score: 3.9 Sequence: AAGTATGAATCAGGTCACACTC
Position: -118
Score: 3.8 Sequence: TAACGAAATGCTTTTCACAGTA
Locus tag: SO0431
Name: yniC Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC |
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yniC
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2-deoxyglucose-6-phosphate hydrolase YniC
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Position: -244
Score: 4.2 Sequence: AAACGAGAGTTAAATCACACTT
Locus tag: SO3421
Name: SO3421 Funciton: b-type cytochrome, putative |
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SO3421
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b-type cytochrome, putative
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Position: -222
Score: 4.2 Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: SO0263
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: SO0262
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: SO0261
Name: ccmC Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: SO0260
Name: ccmD Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: SO0259
Name: ccmE Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone |
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ccmA
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ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
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ccmB
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ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
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ccmD
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cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
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ccmE
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cytochrome c-type biogenesis protein CcmE, heme chaperone
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Position: -117
Score: 4.6 Sequence: TTTATTGATGTAATTCACAGAT
Locus tag: SO0936
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: SO0937
Name: null Funciton: hypothetical protein |
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cadC
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transcriptional regulator-related protein
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hypothetical protein
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Position: -129
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: SO1103
Name: nqrA-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: SO1104
Name: nqrB-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: SO1105
Name: nqrC-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: SO1106
Name: nqrD-1 Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: SO1107
Name: nqrE-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: SO1108
Name: nqrF-2 Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-) |
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nqrA-2
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Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
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nqrB-2
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Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
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nqrC-2
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Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
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nqrD-1
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Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
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nqrE-2
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Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
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nqrF-2
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Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
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Position: -317
Score: 4.2 Sequence: AGAAGTGATCTTGATCAATTTT
Locus tag: SO4606
Name: SO4606 Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: SO4607
Name: SO4607 Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: SO4608
Name: coxG Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: SO4609
Name: SO4609 Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1) |
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SO4606
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cytochrome c oxidase polypeptide II (EC 1.9.3.1)
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SO4607
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cytochrome c oxidase polypeptide I (EC 1.9.3.1)
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coxG
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cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
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SO4609
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cytochrome c oxidase polypeptide III (EC 1.9.3.1)
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Position: -131
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: SO3089
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: SO3088
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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fadI
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -91
Score: 4.7 Sequence: AATATTGATCCAGATCACGTTT
Locus tag: SO4134
Name: SO4134 Funciton: Protein of unknown function DUF465 |
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SO4134
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Protein of unknown function DUF465
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Position: -177
Score: 4.1 Sequence: GTTAGTGATAGCGATCACAAAC
Locus tag: SO2586
Name: SO2586 Funciton: inactive homolog of metal-dependent proteases, putative molecular chaperone
Locus tag: SO2585
Name: SO2585 Funciton: hypothetical protein
Locus tag: SO2584
Name: SO2584 Funciton: Tlr1621 protein |
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SO2586
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inactive homolog of metal-dependent proteases, putative molecular chaperone
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SO2585
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hypothetical protein
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SO2584
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Tlr1621 protein
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Position: -34
Score: 4.4 Sequence: ATACGTGATCTGACGCACATCA
Locus tag: SO0439
Name: SO0439 Funciton: hypothetical protein |
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SO0439
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hypothetical protein
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Position: -152
Score: 4.1 Sequence: TTGTGTGATCATAGTTGCAAAA
Locus tag: SO3552
Name: SO3552 Funciton: Von Willebrand factor type A domain protein
Locus tag: SO3551
Name: SO3551 Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: SO3550
Name: null Funciton: hypothetical protein |
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SO3552
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Von Willebrand factor type A domain protein
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SO3551
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RNA polymerase sigma-70 factor, ECF subfamily
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hypothetical protein
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Position: -109
Score: 4 Sequence: AAAATCGATTTTGCTCACACAA
Locus tag: SO1328
Name: SO1328 Funciton: transcriptional regulator, LysR family |
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SO1328
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transcriptional regulator, LysR family
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Position: -136
Score: 4 Sequence: AACAGTGATGCTGATTAAATTA
Locus tag: SO3914
Name: SO3914 Funciton: ferrichrome-iron receptor
Locus tag: SO3913
Name: piuC Funciton: iron-uptake factor PiuC |
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SO3914
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ferrichrome-iron receptor
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piuC
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iron-uptake factor PiuC
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Position: -257
Score: 4.1 Sequence: AGATGTGATCGGTTGCGCGAAT
Locus tag: SO3395
Name: SO3395 Funciton: hypothetical protein |
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SO3395
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hypothetical protein
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Position: -130
Score: 4 Sequence: TTTGATGATCCACTTCAAACTA
Locus tag: SO4504
Name: null Funciton: hypothetical protein
Locus tag: SO4505
Name: SO4505 Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: SO4506
Name: SO4506 Funciton: iron-sulfur cluster-binding protein
Locus tag: SO4507
Name: SO4507 Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: SO4508
Name: SO4508 Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: SO4509
Name: SO4509 Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: SO4510
Name: fdhB-1 Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: SO4511
Name: SO4511 Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2) |
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hypothetical protein
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SO4505
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hypothetical protein probably related to Formate dehydrogenase function
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SO4506
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iron-sulfur cluster-binding protein
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SO4507
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putative formate dehydrogenase-specific chaperone
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SO4508
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formate dehydrogenase subunit or accessory protein
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SO4509
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formate dehydrogenase-O, major subunit (EC 1.2.1.2)
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fdhB-1
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formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
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SO4511
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formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
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Position: -84
Score: 4.4 Sequence: TTATTTGCGCTACATCACAAAA
Locus tag: SO0355
Name: SO0355 Funciton: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: SO0354
Name: SO0354 Funciton: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter |
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SO0355
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long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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SO0354
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inner membrane protein YrbG, predicted calcium/sodium:proton antiporter
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Position: -297
Score: 4.4 Sequence: CATTGTGAGTTGAGTCATATTT
Position: -189
Score: 4 Sequence: TAATGGGAGCGTCATCACACTC
Position: -57
Score: 4.1 Sequence: TAAAATGAACTAGATCAAAATA
Locus tag: SO1278
Name: SO1278 Funciton: methyl-accepting chemotaxis protein |
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SO1278
|
methyl-accepting chemotaxis protein
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Position: -260
Score: 3.9 Sequence: TAATGTGATTGGTATAAACCTC
Position: -150
Score: 3.9 Sequence: AACTTTGATCCCGATCGACTAT
Locus tag: SO0849
Name: napD Funciton: periplasmic nitrate reductase component NapD
Locus tag: SO0848
Name: napA Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: SO0847
Name: napG Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: SO0846
Name: napH Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: SO0845
Name: napB Funciton: nitrate reductase cytochrome c550-type subunit |
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napD
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periplasmic nitrate reductase component NapD
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napA
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periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
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ferredoxin-type protein NapG (periplasmic nitrate reductase)
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napH
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polyferredoxin NapH (periplasmic nitrate reductase)
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napB
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nitrate reductase cytochrome c550-type subunit
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Position: -135
Score: 3.8 Sequence: GTATTTGAAGTAACTCACAAAG
Position: -94
Score: 4 Sequence: AGGTGTGACCTTTATCCCGATT
Locus tag: SO1415
Name: SO1415 Funciton: transcriptional regulator, TetR family |
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SO1415
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transcriptional regulator, TetR family
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Position: -117
Score: 3.9 Sequence: AAGTGTTAGCTAACTCATAGAT
Locus tag: SO1419
Name: SO1419 Funciton: lipoprotein, putative
Locus tag: SO1420
Name: SO1420 Funciton: outer membrane porin, putative |
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SO1419
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lipoprotein, putative
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SO1420
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outer membrane porin, putative
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Position: -150
Score: 3.8 Sequence: AACTGTTAGCTTTATCACTCAA
Locus tag: SO1389
Name: SO1389 Funciton: ROK family protein, in a cluster with chitinase |
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SO1389
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ROK family protein, in a cluster with chitinase
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Position: -232
Score: 4.1 Sequence: TTGAGTGATAAAGCTAACAGTT
Locus tag: SO1388
Name: SO1388 Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
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SO1388
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Xaa-Pro aminopeptidase (EC 3.4.11.9)
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Position: -233
Score: 4.2 Sequence: GATATTGATACAAATCACATTT
Locus tag: SO4019
Name: SO4019 Funciton: DNA helicase |
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SO4019
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DNA helicase
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Position: -135
Score: 3.9 Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: SO1218
Name: deoA Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: SO1219
Name: deoB Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: SO1221
Name: deoD-2 Funciton: purine nucleoside phosphorylase (EC 2.4.2.1) |
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deoA
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thymidine phosphorylase (EC 2.4.2.4)
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deoB
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phosphopentomutase (EC 5.4.2.7)
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deoD-2
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purine nucleoside phosphorylase (EC 2.4.2.1)
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Position: -132
Score: 3.7 Sequence: CACTATGATCTGCTTCTAATTT
Position: -103
Score: 3.7 Sequence: TAATGAGCCCCGCTTCAAACTT
Locus tag: SO0608
Name: petA Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: SO0609
Name: petB Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: SO0610
Name: petC Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: SO0611
Name: sspA Funciton: stringent starvation protein A
Locus tag: SO0612
Name: sspB Funciton: stringent starvation protein B |
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petA
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ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
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petB
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ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
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petC
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ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
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sspA
|
stringent starvation protein A
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sspB
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stringent starvation protein B
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Position: -75
Score: 4 Sequence: TTCCTTGATTTAGCTCACACTC
Locus tag: SO1613
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -199
Score: 4.1 Sequence: AAATGTGATCTACACCTAAATG
Locus tag: SO2629
Name: icd Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
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icd
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isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
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Position: -161
Score: 4.1 Sequence: TTTCGTGAGCTAGATTAGATAT
Locus tag: SO0141
Name: SO0141 Funciton: sensory box/GGDEF family protein |
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SO0141
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sensory box/GGDEF family protein
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Position: -96
Score: 4.5 Sequence: AAGTGTGATACTTGCCACAAAA
Locus tag: SO1689
Name: SO1689 Funciton: lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4) |
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SO1689
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lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
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Position: -63
Score: 3.8 Sequence: TATTTTGATATTGAATAAAATA
Position: -34
Score: 3.8 Sequence: TGATGTGCCAGTGTTCAAATAG
Position: -2
Score: 3.7 Sequence: TTATGTTATTATTGCCGCAAAA
Locus tag: SO2591
Name: ycbW Funciton: probable membrane protein YcbW |
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ycbW
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probable membrane protein YcbW
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Position: -70
Score: 4.5 Sequence: TTATGAGAGCAGAATCACATTT
Locus tag: SO2797
Name: SO2797 Funciton: glutaredoxin |
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SO2797
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glutaredoxin
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Position: -150
Score: 3.8 Sequence: CTCAATGATCCAGCTCACACTT
Locus tag: SO0162
Name: pckA Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
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phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
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Position: -66
Score: 4 Sequence: TTACGTGACCTATAGCACGTCT
Locus tag: SO3855
Name: sfcA Funciton: NAD-dependent malic enzyme (EC 1.1.1.38) |
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sfcA
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NAD-dependent malic enzyme (EC 1.1.1.38)
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Position: -83
Score: 3.9 Sequence: TCTTGTGAGCGAGTTCACGCCT
Locus tag: SO3987
Name: SO3987 Funciton: hypothetical protein |
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SO3987
|
hypothetical protein
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Position: -129
Score: 3.9 Sequence: AATCGTGATCACTATGGCAAAA
Locus tag: SO4619
Name: yhgI Funciton: NfuA Fe-S protein maturation |
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yhgI
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NfuA Fe-S protein maturation
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Position: -318
Score: 4.4 Sequence: TATTGTAATTTAGTCAACATTT
Position: -132
Score: 4.3 Sequence: AAATGTGACCTAATTGACGTAT
Locus tag: SO4118
Name: SO4118 Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: SO4116
Name: mshH Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: SO4114.2
Name: mshI Funciton: MSHA biogenesis protein MshI |
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SO4118
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NADP-dependent malic enzyme (EC 1.1.1.40)
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mshH
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MSHA biogenesis protein MshH, GGDEF:EAL domain protein
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mshI
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MSHA biogenesis protein MshI
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Position: -137
Score: 4.2 Sequence: CAATGTGAGCGGCTTCAAAATG
Locus tag: SO3776
Name: SO3776 Funciton: hypothetical protein |
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SO3776
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hypothetical protein
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Position: -95
Score: 4.4 Sequence: AAGTGTGATCAAGATCACGTGT
Locus tag: SO2112
Name: rplY Funciton: LSU ribosomal protein L25p |
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rplY
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LSU ribosomal protein L25p
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Position: -119
Score: 4.3 Sequence: TAGAGTGAAATTAATCACAGTT
Locus tag: SO1065
Name: fkpA Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) |
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fkpA
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FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
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Position: -146
Score: 4.4 Sequence: TATAGTGTTGTCCGTCACATTT
Locus tag: SO3774
Name: SO3774 Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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SO3774
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proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Position: -53
Score: 4.5 Sequence: TTTTGTTATACTCGTCACCTTT
Locus tag: SO3797
Name: SO3797 Funciton: probable collagenase (EC 3.4.24.3) |
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SO3797
|
probable collagenase (EC 3.4.24.3)
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Position: -145
Score: 4.7 Sequence: TTATGCGATATTGTTCTCATTT
Locus tag: SO0862
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: SO0861
Name: SO0861 Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress |
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serA
|
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
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SO0861
|
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
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Position: -70
Score: 3.9 Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553 Funciton: putative sulfate permease |
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SO3553
|
putative sulfate permease
|
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Position: -151
Score: 4.3 Sequence: CTGTGTGATCAGGATCTCAGTT
Position: -12
Score: 3.7 Sequence: TTGAGTGATCCCATGCAACAAT
Locus tag: SO1788
Name: miaE Funciton: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) |
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miaE
|
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
|
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Position: -149
Score: 3.9 Sequence: AAGTGTGAACAACAACACTATT
Position: -126
Score: 4.1 Sequence: CATTTTGATCTAGCGCAAACTT
Locus tag: SO3980
Name: nrfA Funciton: cytochrome c552 precursor (EC 1.7.2.2) |
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nrfA
|
cytochrome c552 precursor (EC 1.7.2.2)
|
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Position: -109
Score: 3.8 Sequence: TTGCGTGATTTTGTGCAAGCAT
Locus tag: SO3682
Name: null Funciton: hypothetical protein
Locus tag: SO3681
Name: SO3681 Funciton: universal stress protein family
Locus tag: SO3680
Name: Shewana3_3248 Funciton: UspA domain-containing protein |
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hypothetical protein
|
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SO3681
|
universal stress protein family
|
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Shewana3_3248
|
UspA domain-containing protein
|
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Position: -79
Score: 4.8 Sequence: ACACGTGATCTTGATCACACTT
Locus tag: SO2111
Name: SO2111 Funciton: hypothetical protein |
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SO2111
|
hypothetical protein
|
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Position: -91
Score: 3.8 Sequence: ATCTATGAGTTAGCTAACACTT
Locus tag: SO1418
Name: apbE Funciton: thiamin biosynthesis lipoprotein ApbE |
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apbE
|
thiamin biosynthesis lipoprotein ApbE
|
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|
Position: -319
Score: 5.1 Sequence: AAGTGTGATTAAAATCACACTT
Locus tag: SO2427
Name: null Funciton: TonB-dependent receptor |
|||
|
TonB-dependent receptor
|
|||
|
Position: -166
Score: 4.5 Sequence: AATAGTGATAAAGATCGCGTTT
Locus tag: SO3119
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -220
Score: 3.8 Sequence: TTGGGTGAGCACTGTCACAGAT
Locus tag: SO4452
Name: moaA Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: SO4451
Name: moaC Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: SO4450
Name: moaD Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: SO4449
Name: moaE Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: SO4448
Name: modA Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: SO4447
Name: modB Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: SO4446
Name: modC Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) |
|||
|
moaA
|
molybdenum cofactor biosynthesis protein MoaA
|
||
|
moaC
|
molybdenum cofactor biosynthesis protein MoaC
|
||
|
moaD
|
molybdenum cofactor biosynthesis protein MoaD
|
||
|
moaE
|
molybdenum cofactor biosynthesis protein MoaE
|
||
|
modA
|
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
|
||
|
modB
|
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
|
||
|
modC
|
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
|
||
|
Position: -186
Score: 4.3 Sequence: AAACGCGATCTTTATCACTATT
Locus tag: SO3120
Name: SO3120 Funciton: oxidoreductase, Gfo/Idh/MocA family |
|||
|
SO3120
|
oxidoreductase, Gfo/Idh/MocA family
|
||
|
Position: -234
Score: 4 Sequence: CAATTTGATATGGTTCCAATAA
Position: -125
Score: 4.1 Sequence: TGCTGAGATTCTAATCACAAAA
Locus tag: SO0264
Name: scyA Funciton: cytochrome c-type protein |
|||
|
scyA
|
cytochrome c-type protein
|
||
|
Position: -266
Score: 4.5 Sequence: ATGTGTGACATGGATCTAATTT
Locus tag: SO0769
Name: argR Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon |
|||
|
argR
|
arginine pathway regulatory protein ArgR, repressor of arg regulon
|
||
|
Position: -95
Score: 4.3 Sequence: TCTTGTGAATTGAGTCACATAG
Locus tag: SO2806
Name: SO2806 Funciton: hypothetical protein |
|||
|
SO2806
|
hypothetical protein
|
||
|
Position: -141
Score: 4.1 Sequence: GAGTGTGACCTGATTCATACTT
Locus tag: SO0432
Name: acnB Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) |
|||
|
acnB
|
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
|
||
|
Position: -105
Score: 4.8 Sequence: TATTGTGAGTAAGTTCGCAAAT
Locus tag: SO2858
Name: SO2858 Funciton: hypothetical protein
Locus tag: SO2857
Name: SO2857 Funciton: sodium solute symporter family protein
Locus tag: SO2856
Name: SO2856 Funciton: predicted signal-transduction protein containing cAMP-binding and CBS domains
Locus tag: SO2855
Name: SO2855 Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7)
Locus tag: SO2854
Name: null Funciton: hypothetical protein |
|||
|
SO2858
|
hypothetical protein
|
||
|
SO2857
|
sodium solute symporter family protein
|
||
|
SO2856
|
predicted signal-transduction protein containing cAMP-binding and CBS domains
|
||
|
SO2855
|
DNA polymerase III epsilon subunit (EC 2.7.7.7)
|
||
|
hypothetical protein
|
|||
|
Position: -162
Score: 4.3 Sequence: TTACATGATACGCTTCACAATG
Locus tag: SO4139
Name: SO4139 Funciton: tetratricopeptide repeat family protein |
|||
|
SO4139
|
tetratricopeptide repeat family protein
|
||
|
Position: -203
Score: 4.2 Sequence: TAGTGTGACTAGGGTCTCAGTA
Locus tag: SO3286
Name: cydA Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: SO3285
Name: cydB Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB |
|||
|
cydA
|
cytochrome d ubiquinol oxidase, subunit I, CydA
|
||
|
cydB
|
cytochrome d ubiquinol oxidase, subunit II, CydB
|
||
|
Position: -174
Score: 3.7 Sequence: AAGTTTGCGCTAGATCAAAATG
Position: -151
Score: 4.5 Sequence: AATAGTGTTGTTGTTCACACTT
Locus tag: SO3981
Name: narQ Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: SO3982
Name: narP Funciton: Nitrate/nitrite response regulator protein |
|||
|
narQ
|
Nitrate/nitrite sensor protein (EC 2.7.3.-)
|
||
|
narP
|
Nitrate/nitrite response regulator protein
|
||
|
Position: -92
Score: 4.1 Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: SO4133
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -141
Score: 4 Sequence: TTTTGTGATTTAGCGCATAACG
Locus tag: SO0544
Name: SO0544 Funciton: sensory box histidine kinase
Locus tag: SO0544.1
Name: SO0544.1 Funciton: response regulator receiver protein |
|||
|
SO0544
|
sensory box histidine kinase
|
||
|
SO0544.1
|
response regulator receiver protein
|
||
|
Position: -192
Score: 3.7 Sequence: CGTTATGCGCTAAATCACAAAA
Locus tag: SO0543
Name: SO0543 Funciton: hypothetical protein |
|||
|
SO0543
|
hypothetical protein
|
||
|
Position: -225
Score: 4.2 Sequence: ATTTAAGACCAATATCACATTT
Locus tag: SO2757
Name: SO2757 Funciton: Histidine permease YuiF |
|||
|
SO2757
|
Histidine permease YuiF
|
||
|
Position: -153
Score: 4 Sequence: CATAGAGATTTTTGTCACATAA
Locus tag: SO1783
Name: feoA Funciton: Ferrous iron transport protein A
Locus tag: SO1784
Name: feoB Funciton: Ferrous iron transport protein B |
|||
|
feoA
|
Ferrous iron transport protein A
|
||
|
feoB
|
Ferrous iron transport protein B
|
||
|
Position: -267
Score: 4.2 Sequence: TTTAGTGATATTAGTCAACTAA
Locus tag: SO0625
Name: sel1 Funciton: Sel1 domain protein repeat-containing protein precursor |
|||
|
sel1
|
Sel1 domain protein repeat-containing protein precursor
|
||
|
Position: -82
Score: 4.1 Sequence: AAACGCGAACTAACTCGCATTT
Locus tag: SO2791
Name: cdd Funciton: cytidine deaminase (EC 3.5.4.5) |
|||
|
cdd
|
cytidine deaminase (EC 3.5.4.5)
|
||
|
Position: -149
Score: 4.7 Sequence: ATTCGTGATATTGCTCACTATT
Locus tag: SO1538
Name: icd Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) |
|||
|
icd
|
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
|
||
|
Position: -91
Score: 5 Sequence: AAGTGTGATGGACCTCTCATTT
Locus tag: SO4312
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -184
Score: 4.4 Sequence: TTACATGATGCAGCGCACATTT
Locus tag: SO2727
Name: cctA Funciton: cytochrome c3 |
|||
|
cctA
|
cytochrome c3
|
||
|
Position: -96
Score: 4.7 Sequence: TAATGTGATCGGGGTAATATTT
Locus tag: SO4667
Name: engB Funciton: GTP-binding protein EngB |
|||
|
engB
|
GTP-binding protein EngB
|
||
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATTA
Locus tag: SO4666
Name: cytcB Funciton: Cytochrome c4 |
|||
|
cytcB
|
Cytochrome c4
|
||
|
Position: -122
Score: 4.5 Sequence: TGGCGTGATCCAATTCACCTTT
Position: -82
Score: 4.1 Sequence: TATTGTTAGTCACGTAACAAAA
Locus tag: SO1410
Name: SO1410 Funciton: conserved domain protein |
|||
|
SO1410
|
conserved domain protein
|
||
|
Position: -69
Score: 3.7 Sequence: AATTGTGCATTAGTTAATCTAT
Position: -9
Score: 4.9 Sequence: TAATTTGATATGTATCATATAA
Locus tag: SO4154
Name: SO4154 Funciton: transcriptional regulator, LysR family |
|||
|
SO4154
|
transcriptional regulator, LysR family
|
||
|
Position: -278
Score: 4.3 Sequence: CAATGTGATTGCTATCAACATA
Locus tag: SO0935
Name: nhaD Funciton: Na+/H+ antiporter NhaD type |
|||
|
nhaD
|
Na+/H+ antiporter NhaD type
|
||
|
Position: -113
Score: 4.7 Sequence: TATTGTGATCAGTATCAAACAC
Locus tag: SO0426
Name: lpdA Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) |
|||
|
lpdA
|
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
|
||
|
Position: -68
Score: 5.1 Sequence: AAGTGTGATCTATCTTACATTT
Locus tag: SO1162
Name: lipB Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: SO1161
Name: lipA Funciton: Lipoate synthase |
|||
|
lipB
|
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
|
||
|
lipA
|
Lipoate synthase
|
||
|
Position: -248
Score: 3.7 Sequence: TGTTGTTTTTTTGCTCTCAATT
Position: -190
Score: 3.5 Sequence: TAGAAAGATCCAAGTCACACAT
Locus tag: SO1778
Name: mtrC Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: SO1777
Name: mtrA Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: SO1776
Name: mtrB Funciton: outer membrane protein, MtrB |
|||
|
mtrC
|
surface localized decaheme cytochrome c lipoprotein, MtrC
|
||
|
mtrA
|
periplasmic decaheme cytochrome c, MtrA
|
||
|
mtrB
|
outer membrane protein, MtrB
|
||
|
Position: -225
Score: 4.5 Sequence: TTAGGTGATTCATCTCAAAAAA
Locus tag: SO3537
Name: rpsT Funciton: SSU ribosomal protein S20p |
|||
|
rpsT
|
SSU ribosomal protein S20p
|
||
|
Position: -165
Score: 3.7 Sequence: TAAGGTGAGACTGCGCAAAATA
Locus tag: SO4003
Name: SO4003 Funciton: response regulator |
|||
|
SO4003
|
response regulator
|
||
|
Position: -97
Score: 4.1 Sequence: TTTTGTGCGCACCTTCATAAAT
Locus tag: SO0324
Name: ygbA Funciton: nitrosative stress induced protein |
|||
|
ygbA
|
nitrosative stress induced protein
|
||
|
Position: -96
Score: 4.2 Sequence: CATTGTGAAGCGTATCATGTAA
Locus tag: SO4138
Name: SO4138 Funciton: hypothetical protein |
|||
|
SO4138
|
hypothetical protein
|
||
|
Position: -105
Score: 4.6 Sequence: AAATGTGATGTAGCCCAAAAAG
Locus tag: SO2222
Name: fumB Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2) |
|||
|
fumB
|
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
|
||
|
Position: -70
Score: 3.9 Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553 Funciton: putative sulfate permease
Locus tag: SO3554
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: SO3555
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: SO3556
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
|||
|
SO3553
|
putative sulfate permease
|
||
|
purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
||
|
purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
||
|
SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
||
|
Position: -154
Score: 4.5 Sequence: AAAAGTGAGCCAGTTCTCAATT
Locus tag: SO4700
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -79
Score: 3.9 Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0397
Name: fdrC Funciton: fumarate reductase cytochrome b subunit
Locus tag: SO0398
Name: frdA Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SO0399
Name: frdB Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
fdrC
|
fumarate reductase cytochrome b subunit
|
||
|
frdA
|
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -136
Score: 4.2 Sequence: AATTGAGAACTGGCTCACTTTT
Locus tag: SO4699
Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70) |
|||
|
prlC
|
Oligopeptidase A (EC 3.4.24.70)
|
||
|
Position: -70
Score: 3.9 Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
Name: SO3553 Funciton: putative sulfate permease
Locus tag: SO3554
Name: purE Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: SO3555
Name: purK Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: SO3556
Name: SO3556 Funciton: cyclic nucleotide phosphodiesterase, putative |
|||
|
SO3553
|
putative sulfate permease
|
||
|
purE
|
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
|
||
|
purK
|
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
|
||
|
SO3556
|
cyclic nucleotide phosphodiesterase, putative
|
||
|
Position: -246
Score: 4.3 Sequence: TAATGTGAGCGAAGGCACGATA
Locus tag: SO0940
Name: cadC Funciton: transcriptional regulator-related protein
Locus tag: SO0941
Name: SO0941 Funciton: hypothetical protein |
|||
|
cadC
|
transcriptional regulator-related protein
|
||
|
SO0941
|
hypothetical protein
|
||
|
Position: -265
Score: 4.1 Sequence: ATTATTGATGCATATCAAGAAT
Locus tag: SO2100
Name: resA Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: SO2101
Name: SO2101 Funciton: lipoprotein, putative
Locus tag: SO2102
Name: null Funciton: hypothetical protein
Locus tag: SO2103
Name: apbE Funciton: thiamin biosynthesis lipoprotein ApbE
Locus tag: SO2104
Name: SO2104 Funciton: DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
Locus tag: SO2105
Name: SO2105 Funciton: Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted |
|||
|
resA
|
C-type cytochrome biogenesis protein ResA (thioredoxin)
|
||
|
SO2101
|
lipoprotein, putative
|
||
|
hypothetical protein
|
|||
|
apbE
|
thiamin biosynthesis lipoprotein ApbE
|
||
|
SO2104
|
DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
|
||
|
SO2105
|
Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
|
||
|
Position: -155
Score: 5.1 Sequence: TTATGTGATGATGATCAAAATT
Locus tag: SO2581
Name: fadD1 Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|||
|
fadD1
|
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
|
||
|
Position: -70
Score: 4.7 Sequence: TTTTGTGATCTTCGTCACTGTA
Locus tag: SO2010
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -92
Score: 3.8 Sequence: AATTGATAAGAAGATCACAGTA
Locus tag: SO1963
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) |
|||
|
hmgA
|
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
|
||
|
Position: -102
Score: 4.4 Sequence: TATTTTGACTCAAGTCAAAATT
Locus tag: SO0572
Name: SO0572 Funciton: enoyl-CoA hydratase (EC 4.2.1.17) |
|||
|
SO0572
|
enoyl-CoA hydratase (EC 4.2.1.17)
|
||
|
Position: -183
Score: 4 Sequence: AAGTGTTACACCTATCCCATAT
Locus tag: SO3699.1
Name: SO3699.1 Funciton: hypothetical protein |
|||
|
SO3699.1
|
hypothetical protein
|
||
|
Position: -199
Score: 4.1 Sequence: TTATGTGATTTTCACAACAACA
Position: -157
Score: 3.8 Sequence: AATTGTAAATTTTTGCATATAT
Locus tag: SO4131
Name: SO4131 Funciton: nucleoside-binding outer membrane protein |
|||
|
SO4131
|
nucleoside-binding outer membrane protein
|
||
|
Position: -151
Score: 4.1 Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: SO0096
Name: hutC Funciton: histidine utilization repressor
Locus tag: SO0097
Name: hutU Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: SO0098
Name: hutH Funciton: histidine ammonia-lyase (EC 4.3.1.3) |
|||
|
hutC
|
histidine utilization repressor
|
||
|
hutU
|
urocanate hydratase (EC 4.2.1.49)
|
||
|
hutH
|
histidine ammonia-lyase (EC 4.3.1.3)
|
||
|
Position: -191
Score: 4.4 Sequence: TTTATTGATCAGCATCGCATTT
Locus tag: SO3780
Name: cydD Funciton: Transport ATP-binding protein CydD
Locus tag: SO3779
Name: cydC Funciton: Transport ATP-binding protein CydC
Locus tag: SO3778
Name: cyaB Funciton: adenylate cyclase CyaB, putative |
|||
|
cydD
|
Transport ATP-binding protein CydD
|
||
|
cydC
|
Transport ATP-binding protein CydC
|
||
|
cyaB
|
adenylate cyclase CyaB, putative
|
||
|
Position: -174
Score: 3.5 Sequence: TTAGTTGACTAATATCACTAAA
Locus tag: SO0624
Name: crp Funciton: Cyclic AMP receptor protein Crp |
|||
|
crp
|
Cyclic AMP receptor protein Crp
|
||
|
Position: -105
Score: 4 Sequence: ATTCTTGATATGCATCAATAAT
Locus tag: SO2099
Name: hyaA Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: SO2098
Name: hyaB Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: SO2097
Name: hydC Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: SO2096
Name: hyaD Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: SO2095
Name: hyaE Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: SO2094
Name: hyaF Funciton: NiFe hydrogenase assembly protein, HypF |
|||
|
hyaA
|
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
|
||
|
hyaB
|
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
|
||
|
hydC
|
Ni,Fe-hydrogenase I cytochrome b subunit
|
||
|
hyaD
|
Hydrogenase maturation protease (EC 3.4.24.-)
|
||
|
hyaE
|
NiFe hydrogenase assembly chaperone, HyaE
|
||
|
hyaF
|
NiFe hydrogenase assembly protein, HypF
|
||
|
Position: -207
Score: 4.4 Sequence: ATTTGTGAGCTAGTTAGAATTA
Locus tag: SO4570
Name: SO4570 Funciton: conserved domain protein
Locus tag: SO4568
Name: nrfD-2 Funciton: nitrite reductase, quinol dehydrogenase component, NrfD |
|||
|
SO4570
|
conserved domain protein
|
||
|
nrfD-2
|
nitrite reductase, quinol dehydrogenase component, NrfD
|
||
|
Position: -148
Score: 4.4 Sequence: TACTGTGATCTTCTTATCAATT
Locus tag: SO1965
Name: hmgR Funciton: Tyrosine degradation transcriptional regulator, LysR family |
|||
|
hmgR
|
Tyrosine degradation transcriptional regulator, LysR family
|
||
|
Position: -144
Score: 4 Sequence: TTTTGTGATCATCTTCTAAGAG
Position: -79
Score: 3.9 Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0396
Name: frdC1 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0397
Name: fdrC2 Funciton: Fumarate reductase cytochrome b subunit
Locus tag: SO0398
Name: frdA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: SO0399
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
frdC1
|
Fumarate reductase cytochrome b subunit
|
||
|
fdrC2
|
Fumarate reductase cytochrome b subunit
|
||
|
frdA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
frdB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -173
Score: 4.3 Sequence: TTTTTTGACATGGCTCAAGTAT
Position: -125
Score: 4.1 Sequence: AAATGTGAAGGATAACGCATTG
Locus tag: SO2364
Name: ccoN Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: SO2363
Name: ccoO Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: SO2362
Name: ccoQ Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: SO2361
Name: ccoP Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP |
|||
|
ccoN
|
Cbb3-type cytochrome c oxidase, subunit I, CcoN
|
||
|
ccoO
|
Cbb3-type cytochrome c oxidase, subunit II, CcoO
|
||
|
ccoQ
|
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
|
||
|
ccoP
|
Cbb3-type cytochrome c oxidase, subunit III, CcoP
|
||
|
Position: -202
Score: 4.4 Sequence: AAAAGTGATTTTCGTCACTAAA
Locus tag: SO4232
Name: SO4232 Funciton: long-chain fatty acid transport protein |
|||
|
SO4232
|
long-chain fatty acid transport protein
|
||
|
Position: -75
Score: 4.5 Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: SO1666
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: SO1667
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
|||
|
phhA
|
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
|
||
|
phhB
|
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
|
||
|
Position: -161
Score: 4.4 Sequence: TAGCGTGATTTGGATCTCAATG
Position: -110
Score: 4.4 Sequence: AATTTTGATTTGGATCAATAAT
Locus tag: SO1673
Name: ompW Funciton: outer membrane protein W precursor |
|||
|
ompW
|
outer membrane protein W precursor
|
||
|
Position: -200
Score: 5.1 Sequence: AAATGTGATTTTGTTCACGCTA
Locus tag: SO1670
Name: fahA Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: SO1671
Name: maiA Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
|||
|
fahA
|
Fumarylacetoacetate hydrolase family protein
|
||
|
maiA
|
Maleylacetoacetate isomerase (EC 5.2.1.2)
|
||
|
Position: -210
Score: 4.1 Sequence: CTTTGTGCAGTGTATCACAAAG
Locus tag: SO0021
Name: fadB Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: SO0020
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|||
|
fadB
|
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
|
||
|
fadA
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
|
||
|
Position: -56
Score: 4.4 Sequence: AACTGTGATTAATTTCACTCTA
Locus tag: SO1064
Name: SO1064 Funciton: FOG: WD40 repeat
Locus tag: SO1063
Name: slyX Funciton: protein SlyX
Locus tag: SO1062
Name: def-2 Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: SO1061
Name: SO1061 Funciton: TPR domain protein
Locus tag: SO1060
Name: spaP Funciton: Putative lipoprotein
Locus tag: SO1059
Name: SO1059 Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2) |
|||
|
SO1064
|
FOG: WD40 repeat
|
||
|
slyX
|
protein SlyX
|
||
|
def-2
|
peptide deformylase (EC 3.5.1.88)
|
||
|
SO1061
|
TPR domain protein
|
||
|
spaP
|
Putative lipoprotein
|
||
|
SO1059
|
membrane alanine aminopeptidase N (EC 3.4.11.2)
|
||
|
Position: -78
Score: 4.7 Sequence: AAGTGTGATTTAACTCTCGTTT
Locus tag: SO3422
Name: yfiA-2 Funciton: Ribosome hibernation protein YfiA |
|||
|
yfiA-2
|
Ribosome hibernation protein YfiA
|
||
|
Position: -149
Score: 4.2 Sequence: AACTGAGATCCTGATCACACAG
Locus tag: SO1787
Name: SO1787 Funciton: probable membrane protein YPO2362 |
|||
|
SO1787
|
probable membrane protein YPO2362
|
||
|
Position: -180
Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: SO0442
Name: purH Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: SO0441
Name: purD Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) |
|||
|
purH
|
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
|
||
|
purD
|
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
|
||
|
Position: -161
Score: 3.8 Sequence: TAGCTTGATCAAAAACACAGTT
Locus tag: SO3613
Name: purT Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) |
|||
|
purT
|
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
|
||
|
Position: -197
Score: 4 Sequence: GTTTGTGATCGCTATCACTAAC
Locus tag: SO2587
Name: hemB-1 Funciton: porphobilinogen synthase (EC 4.2.1.24) |
|||
|
hemB-1
|
porphobilinogen synthase (EC 4.2.1.24)
|
||
|
Position: -118
Score: 4.6 Sequence: AAAAGTGATCAAGCTCAAACAT
Locus tag: SO1001
Name: chaA Funciton: calcium/proton antiporter |
|||
|
chaA
|
calcium/proton antiporter
|
||
|
Position: -49
Score: 4.5 Sequence: TTTTTTGAGATGAATCACCTAA
Locus tag: SO3534
Name: mviN Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: SO3533
Name: ribF Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: SO3532
Name: ileS Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: SO3531
Name: lspA Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: SO3530
Name: fkbP-2 Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: SO3529
Name: lytB Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: SO3528
Name: pilV Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: SO3527
Name: pilW Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: SO3526
Name: pilX Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: SO3525
Name: pilY1 Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: SO3524
Name: pilE Funciton: type IV pilus biogenesis protein PilE |
|||
|
mviN
|
proposed peptidoglycan lipid II flippase MurJ
|
||
|
ribF
|
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
|
||
|
ileS
|
isoleucyl-tRNA synthetase (EC 6.1.1.5)
|
||
|
lspA
|
lipoprotein signal peptidase (EC 3.4.23.36)
|
||
|
fkbP-2
|
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
|
||
|
lytB
|
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
|
||
|
pilV
|
type IV fimbrial biogenesis protein PilV
|
||
|
pilW
|
type IV fimbrial biogenesis protein PilW
|
||
|
pilX
|
type IV fimbrial biogenesis protein PilX
|
||
|
pilY1
|
type IV fimbrial biogenesis protein PilY1
|
||
|
pilE
|
type IV pilus biogenesis protein PilE
|
||
|
Position: -294
Score: 4.3 Sequence: AATAGTGATTTTTATTGCAAAT
Locus tag: SO1326
Name: SO1326 Funciton: COG1242: Predicted Fe-S oxidoreductase |
|||
|
SO1326
|
COG1242: Predicted Fe-S oxidoreductase
|
||
|
Position: -339
Score: 3.8 Sequence: TTATGTGACAAAAATCTCTATG
Locus tag: SO1782
Name: mtrD Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: SO1781
Name: mtrE Funciton: outer membrane protein, MtrE
Locus tag: SO1780
Name: mtrF Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: SO1779
Name: omcA Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA |
|||
|
mtrD
|
periplasmic decaheme cytochrome c, MtrD
|
||
|
mtrE
|
outer membrane protein, MtrE
|
||
|
mtrF
|
surface localized decaheme cytochrome c lipoprotein, MtrF
|
||
|
omcA
|
surface localized decaheme cytochrome c lipoprotein, OmcA
|
||
|
Position: -67
Score: 4.1 Sequence: AAATGTGTTAAACCACACAAAA
Locus tag: SO3896
Name: omp35 Funciton: outer membrane porin |
|||
|
omp35
|
outer membrane porin
|
||
|
Position: -194
Score: 4.4 Sequence: TTTGTTGATTGCGATCACAATT
Locus tag: SO2535
Name: SO2535 Funciton: Predicted glutamine amidotransferase |
|||
|
SO2535
|
Predicted glutamine amidotransferase
|
||
|
Position: -196
Score: 4.6 Sequence: CCATGTGATCTGGTTCAAATTT
Locus tag: SO3890
Name: SO3890 Funciton: methyl-accepting chemotaxis protein |
|||
|
SO3890
|
methyl-accepting chemotaxis protein
|
||
|
Position: -95
Score: 4.2 Sequence: AATTTGGATGCAGAACACATTT
Locus tag: SO3542
Name: phk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
|||
|
phk
|
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
|
||
|
Position: -92
Score: 4.1 Sequence: TTAATTGACCTAAATCAAACTT
Locus tag: SO4126
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -157
Score: 4.5 Sequence: ATTTGTGATGTGAATCATTGTT
Locus tag: SO2880
Name: ydhD Funciton: Probable monothiol glutaredoxin ydhD |
|||
|
ydhD
|
Probable monothiol glutaredoxin ydhD
|
||
|
Position: -162
Score: 4.7 Sequence: TGTATTGATCCAGATCACAAAT
Locus tag: SO1329
Name: cyaC Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaC
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -142
Score: 4.7 Sequence: TTCTTTGATAGGTCTCACATTT
Locus tag: SO3403
Name: yfiA-1 Funciton: ribosomal subunit interface protein |
|||
|
yfiA-1
|
ribosomal subunit interface protein
|
||
|
Position: -172
Score: 3.9 Sequence: GATTGTGCTCATGTTAACACTT
Position: -132
Score: 4.5 Sequence: AAATGAGAGGTCCATCACACTT
Locus tag: SO4313
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: SO4314
Name: hemD Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: SO4315
Name: hemX Funciton: Homolog of E. coli HemX protein
Locus tag: SO4316
Name: hemY Funciton: HemY domain-containing protein |
|||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemX
|
Homolog of E. coli HemX protein
|
||
|
hemY
|
HemY domain-containing protein
|
||
|
Position: -164
Score: 4.9 Sequence: AATTTTGATCTGTATCACGCAA
Locus tag: SO4743
Name: SO4743 Funciton: ferrichrome-iron receptor
Locus tag: SO4742
Name: deoR Funciton: transcriptional regulator of glmS gene, DeoR family
Locus tag: SO4741
Name: glmS Funciton: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
|||
|
SO4743
|
ferrichrome-iron receptor
|
||
|
deoR
|
transcriptional regulator of glmS gene, DeoR family
|
||
|
glmS
|
glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
|
||
|
Position: -214
Score: 4.1 Sequence: TTTTGTTAAGCAGATCATGTTT
Locus tag: SO4519
Name: SO4519 Funciton: sodium-dependent transporter |
|||
|
SO4519
|
sodium-dependent transporter
|
||
|
Position: -382
Score: 4.3 Sequence: TACTGTGATCCCGTTAACCCAA
Position: -217
Score: 4.6 Sequence: TATCGTGCCTTCGCTCACATTA
Locus tag: SO0939
Name: SO0939 Funciton: split-soret diheme cytochrome c
Locus tag: SO0938
Name: null Funciton: hypothetical protein |
|||
|
SO0939
|
split-soret diheme cytochrome c
|
||
|
hypothetical protein
|
|||
|
Position: -142
Score: 4 Sequence: AACTGGTATTTTGATCACAATT
Locus tag: SO0617
Name: astC Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: SO0618
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: SO0619
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: SO0620
Name: SO0620 Funciton: FIG008480: hypothetical protein |
|||
|
astC
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
SO0620
|
FIG008480: hypothetical protein
|
||
|
Position: -124
Score: 4.2 Sequence: TAAAGTGATCTTTCTCTAAGAT
Locus tag: SO1363
Name: hcp Funciton: Hydroxylamine reductase (EC 1.7.-.-)
Locus tag: SO1364
Name: hcr Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|||
|
hcp
|
Hydroxylamine reductase (EC 1.7.-.-)
|
||
|
hcr
|
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
|
||
|
Position: -220
Score: 4.3 Sequence: CTTTGTGAGTTACTTCAAATAC
Locus tag: SO1414
Name: SO1414 Funciton: flavocytochrome c flavin subunit
Locus tag: SO1413
Name: SO1413 Funciton: flavocytochrome c heme subunit |
|||
|
SO1414
|
flavocytochrome c flavin subunit
|
||
|
SO1413
|
flavocytochrome c heme subunit
|
||
|
Position: -121
Score: 3.9 Sequence: GAAAGTGACACACCTCAAATAA
Locus tag: SO4142
Name: SO4142 Funciton: cytochrome c family protein
Locus tag: SO4143
Name: SO4143 Funciton: hypothetical protein
Locus tag: SO4144
Name: SO4144 Funciton: octaheme tetrathionate reductase |
|||
|
SO4142
|
cytochrome c family protein
|
||
|
SO4143
|
hypothetical protein
|
||
|
SO4144
|
octaheme tetrathionate reductase
|
||
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATTA
Locus tag: SO4666
Name: cytcB Funciton: diheme cytochrome c4 |
|||
|
cytcB
|
diheme cytochrome c4
|
||
|
Position: -237
Score: 4.4 Sequence: CTTTGTGATACACTGCACAAAG
Locus tag: SO0022
Name: pepQ Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: SO0023
Name: SO0023 Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: SO0024
Name: trkH-1 Funciton: potassium uptake protein TrkH
Locus tag: SO0025
Name: hemG Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) |
|||
|
pepQ
|
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
|
||
|
SO0023
|
FIG000605: protein co-occurring with transport systems (COG1739)
|
||
|
trkH-1
|
potassium uptake protein TrkH
|
||
|
hemG
|
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
|
||
|
Position: -307
Score: 4 Sequence: AAATGTCGCCTTGATCACATTT
Locus tag: SO4591
Name: cymA Funciton: membrane anchored tetraheme cytochrome c, CymA |
|||
|
cymA
|
membrane anchored tetraheme cytochrome c, CymA
|
||
|
Position: -130
Score: 4.3 Sequence: TAATGTGCTCTAGCGCAGATTT
Position: -111
Score: 3.8 Sequence: TTTTTTGCTTTTTCTCTCATTC
Locus tag: SO0479
Name: mccA Funciton: cytochrome c, putative |
|||
|
mccA
|
cytochrome c, putative
|
||
|
Position: -298
Score: 3.8 Sequence: ATTTGTGCACAGCATCAACAAA
Locus tag: SO3406
Name: SO3406 Funciton: FIG024006: iron uptake protein
Locus tag: SO3407
Name: SO3407 Funciton: FIG138928: iron-regulated membrane protein
Locus tag: SO3408
Name: SO3408 Funciton: FIG016502: iron uptake protein |
|||
|
SO3406
|
FIG024006: iron uptake protein
|
||
|
SO3407
|
FIG138928: iron-regulated membrane protein
|
||
|
SO3408
|
FIG016502: iron uptake protein
|
||
|
Position: -158
Score: 4.4 Sequence: AAATGTGATTTGTATCAATATC
Locus tag: SO4018
Name: SO4018 Funciton: hypothetical protein |
|||
|
SO4018
|
hypothetical protein
|
||
|
Position: -262
Score: 4.6 Sequence: TTAAGTGACACCGATCACAGTT
Position: -180
Score: 4.2 Sequence: CAAAATGATCTAGATCATATAA
Locus tag: SO1522
Name: lldP Funciton: L-lactate permease
Locus tag: SO1521
Name: dldD Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing |
|||
|
lldP
|
L-lactate permease
|
||
|
dldD
|
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
|
||
|
Position: -86
Score: 4 Sequence: TATAGTGACTTCAATCACAACC
Locus tag: SO4349
Name: ilvC Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86) |
|||
|
ilvC
|
Ketol-acid reductoisomerase (EC 1.1.1.86)
|
||
|
Position: -47
Score: 4.3 Sequence: AAATTAGATCCATGTCACACAT
Locus tag: SO0770
Name: mdh Funciton: malate dehydrogenase (EC 1.1.1.37) |
|||
|
mdh
|
malate dehydrogenase (EC 1.1.1.37)
|
||
|
Position: -91
Score: 4.3 Sequence: AACAATGATTCACATCACAAAT
Locus tag: SO2881
Name: sodB Funciton: superoxide dismutase [Fe] (EC 1.15.1.1) |
|||
|
sodB
|
superoxide dismutase [Fe] (EC 1.15.1.1)
|
||
|
Position: -72
Score: 4.8 Sequence: AATTGTGATCGCAATCAACAAA
Locus tag: SO2536
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE2
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -235
Score: 4.7 Sequence: TTAAGTGATCTGCCTCACTTAA
Locus tag: SO2753
Name: SO2753 Funciton: prolyl endopeptidase (EC 3.4.21.26) |
|||
|
SO2753
|
prolyl endopeptidase (EC 3.4.21.26)
|
||
|
Position: -172
Score: 4.4 Sequence: AAACATGATCTGCTTAACAAAA
Locus tag: SO4520
Name: SO4520 Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative |
|||
|
SO4520
|
Oxygen-independent coproporphyrinogen III oxidase, putative
|
||
|
Position: -165
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: SO3090
Name: SO3090 Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: SO3091
Name: SO3091 Funciton: Conserved hypothetical protein
Locus tag: SO3092
Name: null Funciton: hypothetical protein
Locus tag: SO3093
Name: SO3093 Funciton: von Willebrand factor type A domain protein
Locus tag: SO3094
Name: SO3094 Funciton: TPR domain protein in aerotolerance operon
Locus tag: SO3095
Name: SO3095 Funciton: hypothetical protein |
|||
|
SO3090
|
MoxR-like ATPase in aerotolerance operon
|
||
|
SO3091
|
Conserved hypothetical protein
|
||
|
hypothetical protein
|
|||
|
SO3093
|
von Willebrand factor type A domain protein
|
||
|
SO3094
|
TPR domain protein in aerotolerance operon
|
||
|
SO3095
|
hypothetical protein
|
||
|
Position: -171
Score: 4.3 Sequence: ATCTGTGACAGTGCTCACCCAA
Locus tag: SO4453
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
|||
|
etfD
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |