Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of DtxR in Corynebacterium diphtheriae NCTC 13129

Properties
Regulator type: Transcription factor
TF locus tag: DIP1414
Regulator family: DtxR
Regulation mode: repressor, activator
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: DtxR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 53
- Operons 26
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 139 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -31
Score: 4.5
Sequence: TAAGGTATGCCTTAGTTAT
Locus tag: DIP0762
Name: cg2311
Funciton: Predicted methyltransferase (EC 2.1.1.-)
DIP0762
cg2311
Predicted methyltransferase (EC 2.1.1.-)
Position: -30
Score: 4.7
Sequence: TTAGCTTAACCTTGCCTAT
Locus tag: DIP0415
Name: cg0527
Funciton: Putative ArsR family regulatory protein
DIP0415
cg0527
Putative ArsR family regulatory protein
Position: -142
Score: 4.3
Sequence: ATAGGCTGACCTAACTTTT
Position: -65
Score: 4.7
Sequence: GAAGATAAGGCTTACCTTT
Locus tag: DIP0523
Name: chtA
Funciton: Predicted membrane protein
Locus tag: DIP0522
Name: chtB
Funciton: Predicted membrane protein
DIP0523
chtA
Predicted membrane protein
DIP0522
chtB
Predicted membrane protein
Position: -86
Score: 5.3
Sequence: ATAGGTTAGGTTAACCTTG
Locus tag: DIP1520
Name: chtB
Funciton: Predicted membrane protein
DIP1520
chtB
Predicted membrane protein
Position: -155
Score: 4.6
Sequence: AAAGGTAAGCCATAGCTAA
Locus tag: DIP2114
Name: adhA
Funciton: Zn-dependent alcohol dehydrogenase( EC:1.1.1.1 )
DIP2114
adhA
Zn-dependent alcohol dehydrogenase( EC:1.1.1.1 )
Position: -68
Score: 4
Sequence: ATTACTAATGCTAACCTAA
Locus tag: DIP2356
Name: irp4
Funciton: Hypothetical protein DUF454
Locus tag: DIP2357
Name: panC
Funciton: Pantoate-beta-alanine ligase
DIP2356
irp4
Hypothetical protein DUF454
DIP2357
panC
Pantoate-beta-alanine ligase
Position: -47
Score: 4
Sequence: GTTGGACAGGTTACCCTAA
Locus tag: DIP1061
Name: frgC
Funciton: Fe-siderophore ABC transporter, permaease protein 1
Locus tag: DIP1060
Name: frgB
Funciton: Fe-siderophore ABC transporter, permease protein 2
Locus tag: DIP1059
Name: frgA
Funciton: Fe-siderophore ABC transporter, ATP-binding protein
DIP1061
frgC
Fe-siderophore ABC transporter, permaease protein 1
DIP1060
frgB
Fe-siderophore ABC transporter, permease protein 2
DIP1059
frgA
Fe-siderophore ABC transporter, ATP-binding protein
Position: -26
Score: 3.9
Sequence: TTAGGGTTGTGTTACCTTG
Locus tag: DIP0582
Name: cuiA
Funciton: Predicted iron ABC transporter, substrate-binding protein
Locus tag: DIP0583
Name: cuiB
Funciton: Predicted iron ABC transporter, permease protein 1
Locus tag: DIP0584
Name: cuiC
Funciton: Predicted iron ABC transporter, permease protein 2
Locus tag: DIP0585
Name: cuiD
Funciton: Predicted iron ABC transporter, ATP-binding protein
DIP0582
cuiA
Predicted iron ABC transporter, substrate-binding protein
DIP0583
cuiB
Predicted iron ABC transporter, permease protein 1
DIP0584
cuiC
Predicted iron ABC transporter, permease protein 2
DIP0585
cuiD
Predicted iron ABC transporter, ATP-binding protein
Position: -20
Score: 4.9
Sequence: TTAGGGTAGCTTCGCCTAA
Locus tag: DIP0586
Name: cuiE
Funciton: Predicted siderophore biosynthesis related protein
Locus tag: DIP0587
Name: cuiF
Funciton: Predicted membrane protein
Locus tag: DIP0588
Name: cuiG
Funciton: Predicted membrane protein
DIP0586
cuiE
Predicted siderophore biosynthesis related protein
DIP0587
cuiF
Predicted membrane protein
DIP0588
cuiG
Predicted membrane protein
Position: -267
Score: 4.2
Sequence: CTAGGTTAGGGGTGCCTAA
Locus tag: DIP0540
Name: secY
Funciton: Preprotein translocase secY subunit (TC 3.A.5.1.1)
Locus tag: DIP0541
Name: adk
Funciton: Adenylate kinase (EC 2.7.4.3)
DIP0540
secY
Preprotein translocase secY subunit (TC 3.A.5.1.1)
DIP0541
adk
Adenylate kinase (EC 2.7.4.3)
Position: -51
Score: 5.3
Sequence: TTAGGATAGCTTTACCTAA
Locus tag: DIP0222
Name: tox
Funciton: Diphtheria toxin (NAD(+)--diphthamide ADP- ribosyltransferase) (EC 2.4.2.36)
DIP0222
tox
Diphtheria toxin (NAD(+)--diphthamide ADP- ribosyltransferase) (EC 2.4.2.36)
Position: -95
Score: 4.4
Sequence: TAACCTTAGGCTTGCCTTT
Locus tag: DIP0922
Name: ripA
Funciton: Iron homeostasis transcription regulator RipA, AraC family
DIP0922
ripA
Iron homeostasis transcription regulator RipA, AraC family
Position: -74
Score: 4.1
Sequence: TTAGGGAACTCTTGCCTTA
Locus tag: DIP0124
Name: piuB
Funciton: Predicted iron-uptake protein
DIP0124
piuB
Predicted iron-uptake protein
Position: -239
Score: 4.6
Sequence: TTAGGGTAGGCTAATCCAA
Locus tag: DIP2161
Name: sidA
Funciton: Nonribosomal peptide synthase
Locus tag: DIP2160
Name: sidB
Funciton: Polyketide synthase
Locus tag: DIP2159
Name: cdtP
Funciton: Predicted ABC transporter, ATP-binding and permease proteins
Locus tag: DIP2158
Name: cdtQ
Funciton: Predicted ABC transporter, ATP-binding and permease proteins
DIP2161
sidA
Nonribosomal peptide synthase
DIP2160
sidB
Polyketide synthase
DIP2159
cdtP
Predicted ABC transporter, ATP-binding and permease proteins
DIP2158
cdtQ
Predicted ABC transporter, ATP-binding and permease proteins
Position: -19
Score: 5.2
Sequence: TAAGGTTTGGTTTACCTTA
Locus tag: DIP1519
Name: htaC
Funciton: Predicted membrane protein
DIP1519
htaC
Predicted membrane protein
Position: -80
Score: 4.8
Sequence: TGAGGGGAACCTAACCTAA
Locus tag: DIP1669
Name: hmuO
Funciton: Heme oxygenase (EC 1.14.99.3)
DIP1669
hmuO
Heme oxygenase (EC 1.14.99.3)
Position: -67
Score: 4
Sequence: AAAGTTAAAGCAAACCTTT
Position: -47
Score: 4.5
Sequence: TAAGGTACGCCTTGCCTTT
Locus tag: DIP0629
Name: htaC
Funciton: Predicted membrane protein
DIP0629
htaC
Predicted membrane protein
Position: -56
Score: 4.5
Sequence: TTATGCTGGGCTATCTTAA
Locus tag: DIP1866
Name: ftn
Funciton: Ferritin
DIP1866
ftn
Ferritin
Position: -173
Score: 4.7
Sequence: TTAGGGTGGGCTAACCTGC
Locus tag: DIP1296
Name: sufR
Funciton: Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
Locus tag: DIP1295
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: DIP1294
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: DIP1293
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: DIP1292
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: DIP1291
Name: sufU
Funciton: Iron-sulfur cluster assembly scaffold protein
Locus tag: DIP1290
Name: sufT
Funciton: Predicted Fe-S cluster assembly protein
DIP1296
sufR
Iron-sulfur cluster biogenesis transcriptional regulator SufR, ArsR family
DIP1295
sufB
Iron-sulfur cluster assembly protein SufB
DIP1294
sufD
Iron-sulfur cluster assembly protein SufD
DIP1293
sufC
Iron-sulfur cluster assembly ATPase protein SufC
DIP1292
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
DIP1291
sufU
Iron-sulfur cluster assembly scaffold protein
DIP1290
sufT
Predicted Fe-S cluster assembly protein
Position: -25
Score: 3.8
Sequence: CTAGGATTGCCTACACTTA
Locus tag: DIP0894
Name: cg1070
Funciton: Conserved hypothetical protein
DIP0894
cg1070
Conserved hypothetical protein
Position: -214
Score: 4.1
Sequence: AAAGGCAAGCCTAAGTAAA
Locus tag: DIP1510
Name: xerC
Funciton: Tyrosine recombinase
DIP1510
xerC
Tyrosine recombinase
Position: -171
Score: 4.6
Sequence: TTAGGTAAGTGTAGCCTAT
Locus tag: DIP0625
Name: htaA
Funciton: Predicted membrane protein
Locus tag: DIP0626
Name: hmuT
Funciton: Heme ABC transporter, substrate-binding protein
Locus tag: DIP0627
Name: hmuU
Funciton: Heme ABC transporter, permease protein
Locus tag: DIP0628
Name: hmuV
Funciton: Heme ABC transporter, ATP-binding protein
DIP0625
htaA
Predicted membrane protein
DIP0626
hmuT
Heme ABC transporter, substrate-binding protein
DIP0627
hmuU
Heme ABC transporter, permease protein
DIP0628
hmuV
Heme ABC transporter, ATP-binding protein
Position: -24
Score: 4
Sequence: TGAAATTAGGGTAACCTGT
Locus tag: DIP1062
Name: frgD
Funciton: Fe-siderophore ABC transporter, substrate-binding protein
DIP1062
frgD
Fe-siderophore ABC transporter, substrate-binding protein
Position: -129
Score: 4.9
Sequence: TTAGGTCAGGGTACCCTAA
Locus tag: DIP0370
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b subunit
Locus tag: DIP0371
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: DIP0372
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: DIP0373
Name: cg0448
Funciton: Conserved hypothetical protein
DIP0370
sdhC
Succinate dehydrogenase cytochrome b subunit
DIP0371
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
DIP0372
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
DIP0373
cg0448
Conserved hypothetical protein
Position: -73
Score: 4.2
Sequence: TTTTCTTTGCCTAGCCTAA
Position: -48
Score: 4.3
Sequence: TATAGTAAGCCTTGCCTCA
Locus tag: DIP0108
Name: irp6A
Funciton: Ferrichrome ABC transporter, substrate-binding protein (TC 3.A.1.14.3)
Locus tag: DIP0109
Name: irp6B
Funciton: Ferrichrome ABC transporter, permease protein (TC 3.A.1.14.3)
Locus tag: DIP0110
Name: irp6C
Funciton: Ferrichrome ABC transporter, ATP-binding protein (TC 3.A.1.14.3)
DIP0108
irp6A
Ferrichrome ABC transporter, substrate-binding protein (TC 3.A.1.14.3)
DIP0109
irp6B
Ferrichrome ABC transporter, permease protein (TC 3.A.1.14.3)
DIP0110
irp6C
Ferrichrome ABC transporter, ATP-binding protein (TC 3.A.1.14.3)
Position: -81
Score: 3.9
Sequence: TAAGGATAGGCCACCCCAA
Locus tag: DIP2303
Name: dps
Funciton: Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)
DIP2303
dps
Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)
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