Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Rex in Rhodococcus opacus B4

Properties
Regulator type: Transcription factor
TF locus tag: ROP_17260
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Regulog: Rex - Actinomycetales
Statistics of regulated genes:
- Genes 35
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 88 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -103
Score: 6.1
Sequence: TCGTGAAAGCATTCACAA
Locus tag: ROP_64060
Name: whiB
Funciton: WhiB-family transcriptional regulator involved in differentiation and sporulation
ROP_64060
whiB
WhiB-family transcriptional regulator involved in differentiation and sporulation
Position: -48
Score: 4.8
Sequence: ATGTGATCGAATGCACAT
Locus tag: ROP_60930
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
ROP_60930
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -17
Score: 4.7
Sequence: TTGTGAGGTAGGTCACAA
Locus tag: ROP_52770
Name: coxM
Funciton: Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
Locus tag: ROP_52780
Name: coxS
Funciton: Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
Locus tag: ROP_52790
Name: coxL
Funciton: Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
Locus tag: ROP_52800
Name: coxF
Funciton: Carbon monoxide dehydrogenase F protein
Locus tag: ROP_52810
Name: coxD
Funciton: Carbon monoxide dehydrogenase D protein
Locus tag: ROP_52820
Name: coxG
Funciton: Carbon monoxide dehydrogenase G protein
Locus tag: ROP_52830
Name: coxE
Funciton: Carbon monoxide dehydrogenase E protein
ROP_52770
coxM
Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)
ROP_52780
coxS
Carbon monoxide dehydrogenase small chain (EC 1.2.99.2)
ROP_52790
coxL
Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )
ROP_52800
coxF
Carbon monoxide dehydrogenase F protein
ROP_52810
coxD
Carbon monoxide dehydrogenase D protein
ROP_52820
coxG
Carbon monoxide dehydrogenase G protein
ROP_52830
coxE
Carbon monoxide dehydrogenase E protein
Position: -40
Score: 5.1
Sequence: TTGTGACAGCCATCACAA
Locus tag: ROP_25550
Name: dhaS
Funciton: Acetaldehyde dehydrogenase (EC 1.2.1.10)
Locus tag: ROP_25560
Name: adhB
Funciton: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
ROP_25550
dhaS
Acetaldehyde dehydrogenase (EC 1.2.1.10)
ROP_25560
adhB
Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Position: -215
Score: 5.1
Sequence: CTGTGATCGGGTTCACAA
Locus tag: ROP_12860
Name: pntAa
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: ROP_12850
Name: pntAb
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: ROP_12840
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
ROP_12860
pntAa
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
ROP_12850
pntAb
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
ROP_12840
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -88
Score: 4.1
Sequence: CTGTGGCATAACTCACAA
Locus tag: ROP_59710
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: ROP_59720
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: ROP_59730
Name: nuoCD
Funciton: NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
Locus tag: ROP_59740
Name: nuoCD
Funciton: NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
Locus tag: ROP_59750
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: ROP_59760
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: ROP_59770
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: ROP_59780
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: ROP_59790
Name: nuoI
Funciton: NADH-quinone oxidoreductase, chain I
Locus tag: ROP_59800
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: ROP_59810
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: ROP_59820
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: ROP_59830
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: ROP_59840
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
ROP_59710
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
ROP_59720
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
ROP_59730
nuoCD
NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
ROP_59740
nuoCD
NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
ROP_59750
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
ROP_59760
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
ROP_59770
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
ROP_59780
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
ROP_59790
nuoI
NADH-quinone oxidoreductase, chain I
ROP_59800
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
ROP_59810
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
ROP_59820
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
ROP_59830
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
ROP_59840
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -108
Score: 4.9
Sequence: AAGTGACCGCCTTCACAT
Locus tag: ROP_33030
Name: COG1960
Funciton: Acyl-CoA dehydrogenase protein, COG1960
ROP_33030
COG1960
Acyl-CoA dehydrogenase protein, COG1960
Position: -71
Score: 4.6
Sequence: TTGTGGCAGTTGTCACAA
Locus tag: ROP_62610
Name: choD
Funciton: Cholesterol oxidase (EC 1.1.3.6)
ROP_62610
choD
Cholesterol oxidase (EC 1.1.3.6)
Position: -164
Score: 5.7
Sequence: TTGTGCATGGGTTCACAA
Locus tag: ROP_17260
Name: rex
Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: ROP_17250
Name: hemA
Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: ROP_17240
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: ROP_17230
Name: hemD
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: ROP_17220
Name: hemB
Funciton: Porphobilinogen synthase (EC 4.2.1.24)
ROP_17260
rex
Redox-sensitive transcriptional regulator Rex
ROP_17250
hemA
Glutamyl-tRNA reductase (EC 1.2.1.70)
ROP_17240
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
ROP_17230
hemD
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
ROP_17220
hemB
Porphobilinogen synthase (EC 4.2.1.24)
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