Regulon of Rex in Frankia sp. CcI3
| Regulator type: | Transcription factor |
| TF locus tag: | Francci3_0484 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Actinomycetales |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -92
Score: 5.4 Sequence: TCGTGAAGAATTTCACGA
Locus tag: Francci3_0537
Name: COG0644 Funciton: putative NAD-dependent reductase, COG0644
Locus tag: Francci3_0538
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Francci3_0539
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Francci3_0540
Name: nuoCD Funciton: NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
Locus tag: Francci3_0541
Name: nuoCD Funciton: NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
Locus tag: Francci3_0542
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: Francci3_0543
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: Francci3_0544
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: Francci3_0545
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Francci3_0546
Name: nuoI Funciton: NADH-quinone oxidoreductase, chain I
Locus tag: Francci3_0547
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Francci3_0548
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: Francci3_0549
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: Francci3_0550
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: Francci3_0551
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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COG0644
|
putative NAD-dependent reductase, COG0644
|
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nuoA
|
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
|
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
|
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nuoCD
|
NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
|
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nuoCD
|
NADH-ubiquinone oxidoreductase chain C, chainD (EC 1.6.5.3)
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nuoE
|
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nuoF
|
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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nuoG
|
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH
|
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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nuoI
|
NADH-quinone oxidoreductase, chain I
|
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
|
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL
|
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM
|
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN
|
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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Position: -159
Score: 5.3 Sequence: TCGTGAATCCCTTCACGA
Locus tag: Francci3_0484
Name: rex Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: Francci3_0485
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: Francci3_0486
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Francci3_0487
Name: hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Francci3_0488
Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24) |
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rex
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Redox-sensitive transcriptional regulator Rex
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hemA
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Glutamyl-tRNA reductase (EC 1.2.1.70)
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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hemD
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
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hemB
|
Porphobilinogen synthase (EC 4.2.1.24)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |