Regulon of PsrA in Laribacter hongkongensis HLHK9
| Regulator type: | Transcription factor |
| TF locus tag: | LHK_01607 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Various betaproteobacteria |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -187
Score: 6.1 Sequence: ATTCAAACGACTGTTTGAAG
Locus tag: LHK_02913
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: LHK_02912
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: LHK_02910
Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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acdH2
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -88
Score: 5.8 Sequence: GTTCAAACGATCGTTTTATT
Locus tag: LHK_02384
Name: null Funciton: probable acyl-CoA-binding protein |
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probable acyl-CoA-binding protein
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Position: -54
Score: 6 Sequence: ATCCAAACATTCGTTTGAAA
Position: -21
Score: 5.5 Sequence: TTTCAAACGGTCGTTTAACC
Locus tag: LHK_02264
Name: acdH Funciton: Probable acyl-CoA dehydrogenase |
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acdH
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Probable acyl-CoA dehydrogenase
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Position: -90
Score: 5.4 Sequence: AGGCAAACGCCCGTTTGACA
Locus tag: LHK_00568
Name: fabF Funciton: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
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fabF
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3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)
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Position: -40
Score: 5.8 Sequence: TATCAAACACTCGTTTGATA
Locus tag: LHK_02406
Name: scp Funciton: SCP-2 sterol transfer family |
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scp
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SCP-2 sterol transfer family
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Position: 43
Score: 6 Sequence: AATCAAACGGTCGTTTGACA
Locus tag: LHK_00049
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -68
Score: 5.9 Sequence: ATTCAAACAGTCGTTTGATG
Locus tag: LHK_00066
Name: null Funciton: Putative enoyl-CoA hydratase |
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Putative enoyl-CoA hydratase
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Position: -107
Score: 5.6 Sequence: AATCAAACGACCGTTTGGCT
Locus tag: LHK_01931
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -22
Score: 5.6 Sequence: TTTCAAACGATCGTTTGCTT
Locus tag: LHK_02202
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -142
Score: 5.6 Sequence: TATAAAACGGCTGTTTGAAA
Position: -63
Score: 4.9 Sequence: TCTCAAACGATCGTTTGCCT
Locus tag: LHK_01608
Name: fadL Funciton: Long-chain fatty acid transport protein
Locus tag: LHK_01609
Name: acdB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: LHK_01610
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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fadL
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Long-chain fatty acid transport protein
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acdB
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Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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Position: -38
Score: 5.4 Sequence: ATTAAAACGTAAGTTTCAAA
Position: -25
Score: 5.6 Sequence: TTTCAAACAACTGTTTGGAT
Locus tag: LHK_01607
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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Position: -97
Score: 5.9 Sequence: ATTCAAACGGCCGTTTGACG
Locus tag: LHK_02892
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |