Regulon of PsrA in Chromohalobacter salexigens DSM 3043
| Regulator type: | Transcription factor |
| TF locus tag: | Csal_2069 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
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Position: -132
Score: 5 Sequence: ATTAAAACAAACGTTTGCTC
Locus tag: Csal_3004
Name: fadL Funciton: Long-chain fatty acid transport protein |
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fadL
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Long-chain fatty acid transport protein
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Position: -101
Score: 5 Sequence: AATCAAACGAACGCTTGACT
Position: -61
Score: 5.6 Sequence: TTTCAAACGCATGTTTGATG
Locus tag: Csal_2431
Name: acdH3 Funciton: acyl-CoA dehydrogenase-like protein |
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acdH3
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acyl-CoA dehydrogenase-like protein
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Position: -61
Score: 5.3 Sequence: GTTCATACAGTTGTTTGAAA
Locus tag: Csal_0879
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -246
Score: 5.7 Sequence: TTTTAAACGGTTGTTTGATT
Position: -65
Score: 5 Sequence: TATCAAACGCTTGAATGAAT
Locus tag: Csal_1613
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: Csal_1614
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -39
Score: 5.6 Sequence: ATTCAAACGCTCGTTAGAAT
Locus tag: Csal_1510
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -36
Score: 5 Sequence: ATTCACACATACGTTTGCAT
Locus tag: Csal_2644
Name: null Funciton: acyl-CoA dehydrogenase-like protein |
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acyl-CoA dehydrogenase-like protein
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Position: -59
Score: 5.7 Sequence: TATGAAACATTTGTTTGAAA
Locus tag: Csal_1939
Name: scp Funciton: Sterol-binding domain protein |
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scp
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Sterol-binding domain protein
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Position: -249
Score: 5.1 Sequence: TTTTAATCGTCTGTTTTAAT
Locus tag: Csal_1468
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -108
Score: 6 Sequence: ATTCAAACGATTGTATGAAA
Locus tag: Csal_2393
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Csal_2392
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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Position: -127
Score: 5.7 Sequence: AATCAAACAACCGTTTAAAA
Locus tag: Csal_1612
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -36
Score: 4.9 Sequence: TTTTAAACATTCGTTTATTC
Locus tag: Csal_2069
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |