Regulon of PsrA in Oceanobacter sp. RED65
| Regulator type: | Transcription factor |
| TF locus tag: | RED65_00695 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
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Position: -138
Score: 5.7 Sequence: ATTCAAACGGGCGTATGAAT
Locus tag: RED65_01305
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: RED65_01310
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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Position: -122
Score: 5.5 Sequence: TTGCAAACGTATGTTTCAAA
Position: -109
Score: 5.8 Sequence: TTTCAAACACTTGTTTGAAG
Locus tag: RED65_07784
Name: acdH1 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
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acdH1
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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Position: -236
Score: 6 Sequence: ATTCAAACGCGCGTTTGAAT
Locus tag: RED65_07029
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -46
Score: 4.8 Sequence: TTCAGAACGTATGTTTAAAA
Position: -33
Score: 6.1 Sequence: TTTAAAACAATCGTTTGAAT
Locus tag: RED65_00695
Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
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psrA
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Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |