Regulon of PyrR in Lactobacillus fermentum IFO 3956
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Regulog: | PyrR - Lactobacillaceae |
| Under regulation: | |
| - Genes | 11 |
| - Operons | 5 |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - PyrR
- By effector - PyrR
- By pathway - Pyrimidine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -109
Score: 49.7 Sequence: AAGTCTTTAACGACG...
Locus tag: LAF_0911
Name: codB Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein
Locus tag: LAF_0912
Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1) |
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codB
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Cytosine/purine/uracil/thiamine/allantoin permease family protein
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codA
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Cytosine deaminase (EC 3.5.4.1)
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Position: -115
Score: 43.3 Sequence: AGTCCTTTAATGGAA...
Locus tag: LAF_0434
Name: pyrP Funciton: Xanthine/uracil permease |
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pyrP
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Xanthine/uracil permease
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Position: -116
Score: 45.4 Sequence: TCACCATTTAAGTAA...
Locus tag: LAF_0047
Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LAF_0048
Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
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pyrF
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Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
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pyrE
|
Orotate phosphoribosyltransferase (EC 2.4.2.10)
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Position: -106
Score: 30.8 Sequence: ATGCCTTTAAGTGGA...
Locus tag: LAF_0046
Name: pyrR Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
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pyrR
|
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
|
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Position: -269
Score: 59 Sequence: GATGTCCTTTAAGCT...
Position: -146
Score: 38.4 Sequence: ATAAACCATCAAATT...
Locus tag: LAF_1205
Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LAF_1204
Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LAF_1203
Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LAF_1202
Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LAF_1201
Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1) |
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pyrB
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Aspartate carbamoyltransferase (EC 2.1.3.2)
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pyrC
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Dihydroorotase (EC 3.5.2.3)
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carA
|
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
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carB
|
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
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pyrD
|
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |