Regulon of PyrR in Lactobacillus fermentum IFO 3956

Properties
Regulator type:	RNA regulatory element
Name:	PyrR
RFAM:	RF00515
Regulation mode:
Biological process:	Pyrimidine metabolism
Effector:	PyrR
Regulog:	PyrR - Lactobacillaceae
Under regulation:
- Genes	11
- Operons	5

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - PyrR
By effector - PyrR
By pathway - Pyrimidine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -109 Score: 49.7 Sequence: AAGTCTTTAACGACG... Locus tag: LAF_0911 Name: codB Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein Locus tag: LAF_0912 Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1)
	LAF_0911	codB	Cytosine/purine/uracil/thiamine/allantoin permease family protein
	LAF_0912	codA	Cytosine deaminase (EC 3.5.4.1)
Position: -115 Score: 43.3 Sequence: AGTCCTTTAATGGAA... Locus tag: LAF_0434 Name: pyrP Funciton: Xanthine/uracil permease
	LAF_0434	pyrP	Xanthine/uracil permease
Position: -116 Score: 45.4 Sequence: TCACCATTTAAGTAA... Locus tag: LAF_0047 Name: pyrF Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) Locus tag: LAF_0048 Name: pyrE Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
	LAF_0047	pyrF	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
	LAF_0048	pyrE	Orotate phosphoribosyltransferase (EC 2.4.2.10)
Position: -106 Score: 30.8 Sequence: ATGCCTTTAAGTGGA... Locus tag: LAF_0046 Name: pyrR Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
	LAF_0046	pyrR	Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Position: -269 Score: 59 Sequence: GATGTCCTTTAAGCT... Position: -146 Score: 38.4 Sequence: ATAAACCATCAAATT... Locus tag: LAF_1205 Name: pyrB Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2) Locus tag: LAF_1204 Name: pyrC Funciton: Dihydroorotase (EC 3.5.2.3) Locus tag: LAF_1203 Name: carA Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) Locus tag: LAF_1202 Name: carB Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) Locus tag: LAF_1201 Name: pyrD Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
	LAF_1205	pyrB	Aspartate carbamoyltransferase (EC 2.1.3.2)
	LAF_1204	pyrC	Dihydroorotase (EC 3.5.2.3)
	LAF_1203	carA	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
	LAF_1202	carB	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
	LAF_1201	pyrD	Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD