Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Marinomonas sp. MWYL1

Properties
Regulator type: Transcription factor
TF locus tag: Mmwyl1_2117
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes 14
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 91 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -87
Score: 6
Sequence: TACTGTTTTTATATACAGTA
Locus tag: Mmwyl1_3732
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -50
Score: 5.6
Sequence: TACTGTATAAATAACCATAT
Locus tag: Mmwyl1_3966
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -37
Score: 5.3
Sequence: AACTGTGTTTTTATACAGTA
Locus tag: Mmwyl1_3784
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -44
Score: 5.8
Sequence: TGCTGTATATAATAACAGTA
Locus tag: Mmwyl1_2117
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -42
Score: 6.2
Sequence: AACTGTATATTTATACAGTA
Locus tag: Mmwyl1_3691
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
yebG
SOS regulon DNA damage-inducible protein

Position: -43
Score: 5
Sequence: GGCTGTTGAAATATACAGTA
Locus tag: Mmwyl1_2188
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Mmwyl1_2189
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: Mmwyl1_2190
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -35
Score: 6
Sequence: TACTGTATATCTATACAGTA
Locus tag: Mmwyl1_1981
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Mmwyl1_1982
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -34
Score: 5.6
Sequence: TACTGTACGAATATACAGTC
Locus tag: Mmwyl1_2469
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
umuD
DNA polymerase V, subunit UmuD

Position: -34
Score: 6
Sequence: TACTGTTTATATATACAGCA
Locus tag: Mmwyl1_0398
Name: PF04055
Funciton: DNA repair photolyase
PF04055
DNA repair photolyase

Position: -29
Score: 6.5
Sequence: TACTGTATATATAAACAGTA
Locus tag: Mmwyl1_3275
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -73
Score: 5.7
Sequence: TACTGTAAAAATAGACAGTT
Locus tag: Mmwyl1_4249
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A
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